Wall clock time and date at job start Tue Mar 31 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 C 1.38460 * 119.38691 * 124.72555 * 5 4 2 7 7 C 1.38373 * 119.51759 * 179.73393 * 6 5 4 8 8 C 1.50699 * 120.81583 * 180.24389 * 7 6 5 9 9 F 1.39899 * 109.47123 * 0.29607 * 8 7 6 10 10 F 1.39902 * 109.47007 * 120.29255 * 8 7 6 11 11 F 1.39894 * 109.47025 * 240.29524 * 8 7 6 12 12 C 1.39976 * 118.36297 * 0.53315 * 7 6 5 13 13 C 1.43199 * 120.61193 * 179.75894 * 12 7 6 14 14 N 7.44329 * 80.42207 * 186.84501 * 2 1 3 15 15 C 1.40656 * 118.77232 * 359.73060 * 12 7 6 16 16 S 1.76192 * 119.83454 * 179.97438 * 15 12 7 17 17 C 1.76199 * 100.00097 * 180.02562 * 16 15 12 18 18 H 1.08001 * 120.00208 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99862 * 180.02562 * 17 16 15 20 20 N 1.31555 * 119.99783 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00054 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46957 * 90.00531 * 21 19 17 23 23 H 1.48503 * 109.47244 * 209.99958 * 21 19 17 24 24 H 1.48496 * 109.47492 * 330.00037 * 21 19 17 25 25 N 1.31777 * 119.37975 * 305.00307 * 5 4 2 26 26 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 28 28 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 29 29 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 30 30 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 31 31 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 34 34 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 35 35 H 1.08003 * 120.23998 * 359.97438 * 6 5 4 36 36 H 0.96991 * 119.99732 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 -2.1733 -1.1891 6 6 0.9215 -2.7242 -2.2358 7 6 0.5588 -4.0586 -2.1859 8 6 -0.2199 -4.6895 -3.3113 9 9 -0.4590 -3.7348 -4.3055 10 9 0.5162 -5.7500 -3.8505 11 9 -1.4397 -5.1695 -2.8226 12 6 0.9277 -4.8063 -1.0616 13 6 0.5730 -6.1898 -0.9575 14 7 0.2915 -7.2872 -0.8748 15 6 1.6538 -4.1739 -0.0363 16 16 2.1319 -5.0884 1.3918 17 6 2.9768 -3.8310 2.2917 18 1 3.0574 -2.8351 1.8818 19 6 3.5397 -4.1208 3.5270 20 7 4.1709 -3.1821 4.1986 21 14 3.4009 -5.8435 4.2356 22 1 4.5631 -6.6556 3.7938 23 1 3.3844 -5.7689 5.7187 24 1 2.1449 -6.4757 3.7579 25 7 1.9795 -2.8935 -0.1387 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9562 0.8901 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6053 -0.2617 -2.1370 34 1 3.1263 -0.6443 -1.2952 35 1 0.6485 -2.1177 -3.0868 36 1 4.5639 -3.3845 5.0619 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067604011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:45 Heat of formation + Delta-G solvation = -108.217991 kcal Electronic energy + Delta-G solvation = -25812.376246 eV Core-core repulsion = 21586.341731 eV Total energy + Delta-G solvation = -4226.034514 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.071 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.22659 -47.74950 -47.67088 -40.19542 -36.76261 -35.80131 -33.23129 -32.85938 -31.68507 -27.70660 -26.99301 -26.49142 -26.03255 -23.80780 -22.30091 -19.92897 -19.37899 -18.66312 -18.54287 -17.99814 -17.72162 -16.37037 -15.54992 -15.28515 -15.00827 -14.81397 -14.56933 -14.38616 -14.17577 -14.11259 -13.83389 -13.79333 -13.72269 -13.64252 -13.17703 -12.78132 -12.72920 -12.50988 -12.35075 -12.22109 -12.10376 -11.82997 -11.57888 -11.41206 -11.25615 -10.87364 -10.75562 -10.45071 -10.30775 -10.25433 -9.49296 -9.31619 -9.14999 -9.05354 -7.43473 -6.67288 -4.43756 0.59123 1.01983 2.22213 2.54858 2.84268 3.00838 3.09936 3.14098 3.15893 3.55502 3.80414 3.87106 3.93242 4.00672 4.11117 4.35685 4.66697 4.74986 4.90897 5.10845 5.14562 5.19603 5.26264 5.45205 5.59358 5.75380 5.80694 5.85408 5.90879 5.93477 6.00856 6.13705 6.28034 6.45818 6.54633 6.68433 7.58025 7.67066 8.08247 8.43754 8.71440 10.39533 Molecular weight = 330.07amu Principal moments of inertia in cm(-1) A = 0.009783 B = 0.005754 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.342433 B = 4865.102223 C = 7309.039945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.065 4.065 5 C 0.192 3.808 6 C -0.180 4.180 7 C -0.068 4.068 8 C 0.508 3.492 9 F -0.172 7.172 10 F -0.171 7.171 11 F -0.171 7.171 12 C -0.076 4.076 13 C 0.255 3.745 14 N -0.402 5.402 15 C 0.164 3.836 16 S 0.072 5.928 17 C -0.529 4.529 18 H 0.132 0.868 19 C 0.102 3.898 20 N -0.846 5.846 21 Si 0.838 3.162 22 H -0.260 1.260 23 H -0.262 1.262 24 H -0.238 1.238 25 N -0.444 5.444 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.148 0.852 36 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.835 5.749 -11.863 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.201 4.201 4 C -0.103 4.103 5 C 0.043 3.957 6 C -0.208 4.208 7 C -0.081 4.081 8 C 0.454 3.546 9 F -0.153 7.153 10 F -0.153 7.153 11 F -0.153 7.153 12 C -0.094 4.094 13 C -0.060 4.060 14 N -0.078 5.078 15 C -0.086 4.086 16 S 0.329 5.671 17 C -0.676 4.676 18 H 0.150 0.850 19 C -0.110 4.110 20 N -0.478 5.478 21 Si 0.662 3.338 22 H -0.184 1.184 23 H -0.186 1.186 24 H -0.163 1.163 25 N -0.157 5.157 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.166 0.834 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.748 3.155 -10.232 12.153 hybrid contribution -0.190 0.490 -0.702 0.877 sum -5.938 3.645 -10.934 12.965 Atomic orbital electron populations 1.21837 0.95465 1.01691 1.01243 1.21108 0.95664 0.95826 0.98674 1.21813 1.01143 0.95814 1.01373 1.20712 1.02307 0.88001 0.99306 1.21496 0.89885 0.96402 0.87964 1.21405 1.04033 0.93168 1.02175 1.20051 0.99566 0.95582 0.92870 1.18205 0.78008 0.76505 0.81932 1.93172 1.94649 1.63916 1.63571 1.93244 1.76899 1.57962 1.87150 1.93242 1.45703 1.88618 1.87690 1.15882 1.09074 0.87155 0.97294 1.25114 0.94055 0.92309 0.94530 1.81133 1.08709 1.11195 1.06784 1.23627 0.94083 0.93333 0.97602 1.83399 1.58765 1.16139 1.08767 1.22907 1.38853 0.99733 1.06093 0.84996 1.24809 0.93287 0.97453 0.95478 1.69853 1.31481 1.32814 1.13699 0.87072 0.81369 0.84444 0.80931 1.18423 1.18609 1.16275 1.68084 1.20060 1.04353 1.23167 0.92872 0.92778 0.93061 0.88859 0.92653 0.92530 0.93091 0.90151 0.89242 0.83409 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.01 37.16 0.33 -1.40 16 2 C -0.09 -1.19 2.84 -90.62 -0.26 -1.45 16 3 C -0.14 -1.53 9.19 37.16 0.34 -1.18 16 4 C -0.07 -0.77 5.08 -27.89 -0.14 -0.91 16 5 C 0.19 2.85 5.16 -82.53 -0.43 2.42 16 6 C -0.18 -2.38 9.08 -39.45 -0.36 -2.74 16 7 C -0.07 -1.03 5.43 -103.92 -0.56 -1.59 16 8 C 0.51 7.12 2.91 36.01 0.10 7.22 16 9 F -0.17 -2.09 16.07 2.25 0.04 -2.05 16 10 F -0.17 -2.54 16.62 2.25 0.04 -2.50 16 11 F -0.17 -2.54 16.62 2.25 0.04 -2.50 16 12 C -0.08 -1.36 5.76 -106.41 -0.61 -1.97 16 13 C 0.26 4.79 12.40 -22.48 -0.28 4.51 16 14 N -0.40 -7.87 18.54 41.84 0.78 -7.09 16 15 C 0.16 3.25 7.00 -16.35 -0.11 3.14 16 16 S 0.07 1.61 18.62 -107.50 -2.00 -0.39 16 17 C -0.53 -13.52 9.80 30.94 0.30 -13.22 16 18 H 0.13 3.59 6.77 -52.49 -0.36 3.23 16 19 C 0.10 2.65 5.50 -17.46 -0.10 2.55 16 20 N -0.85 -22.79 13.96 55.49 0.77 -22.01 16 21 Si 0.84 18.79 27.74 -169.99 -4.71 14.07 16 22 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.24 -5.23 6.74 56.52 0.38 -4.85 16 25 N -0.44 -8.39 7.84 -7.90 -0.06 -8.45 16 26 H 0.05 0.72 7.38 -51.93 -0.38 0.34 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.09 1.53 7.79 -51.93 -0.40 1.12 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.71 7.85 -51.93 -0.41 0.31 16 34 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 35 H 0.15 1.47 7.12 -52.48 -0.37 1.10 16 36 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -26.59 340.21 -5.37 -31.96 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -3.62 Total: -1.54 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -1.77 Total: -4.62 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 1.49 Total: -37.56 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 0.11 Total: -7.05 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.71 Total: 14.07 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.00 Total: -0.39 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -26.59 -5.37 -31.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067604011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.257 kcal (2) G-P(sol) polarization free energy of solvation -26.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds