Wall clock time and date at job start Tue Mar 31 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48508 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47196 * 299.99173 * 3 2 1 6 6 H 1.48497 * 109.47565 * 59.99552 * 3 2 1 7 7 C 1.38815 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00142 * 196.89924 * 7 2 1 9 9 N 1.36935 * 119.99552 * 17.18837 * 7 2 1 10 10 C 1.47072 * 120.88769 * 26.56194 * 9 7 2 11 11 C 1.53689 * 108.28061 * 128.75549 * 10 9 7 12 12 N 1.46908 * 109.25591 * 54.08328 * 11 10 9 13 13 C 1.46899 * 110.99894 * 172.60742 * 12 11 10 14 14 C 1.50697 * 109.47440 * 294.30445 * 13 12 11 15 15 C 1.33396 * 125.20034 * 89.71805 * 14 13 12 16 16 C 1.38467 * 114.91495 * 179.85974 * 15 14 13 17 17 Br 1.89103 * 122.54479 * 180.19987 * 16 15 14 18 18 C 1.33428 * 114.90476 * 0.43304 * 16 15 14 19 19 S 1.75881 * 125.19470 * 270.02569 * 14 13 12 20 20 C 1.46895 * 111.26905 * 296.75534 * 12 11 10 21 21 C 1.47082 * 120.87800 * 206.84012 * 9 7 2 22 22 H 0.97002 * 120.00194 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.62781 * 248.52649 * 10 9 7 24 24 H 1.09007 * 109.62956 * 9.10346 * 10 9 7 25 25 H 1.09005 * 109.64961 * 294.08168 * 11 10 9 26 26 H 1.09003 * 109.44801 * 173.96448 * 11 10 9 27 27 H 1.09007 * 109.47250 * 54.30048 * 13 12 11 28 28 H 1.09005 * 109.46837 * 174.30009 * 13 12 11 29 29 H 1.08001 * 122.53984 * 0.03519 * 15 14 13 30 30 H 1.08001 * 125.20495 * 179.76902 * 18 16 15 31 31 H 1.08994 * 109.49506 * 303.14713 * 20 12 11 32 32 H 1.08997 * 109.49438 * 183.06292 * 20 12 11 33 33 H 1.09003 * 109.62976 * 350.89624 * 21 9 7 34 34 H 1.09001 * 109.62615 * 111.27813 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2223 0.2724 9 7 1.3713 -2.3617 -0.3494 10 6 0.2077 -2.3408 -1.2486 11 6 0.4533 -3.3532 -2.3785 12 7 0.7628 -4.6653 -1.7945 13 6 0.8322 -5.7009 -2.8340 14 6 -0.5306 -5.8868 -3.4498 15 6 -0.9958 -5.2157 -4.5047 16 6 -2.2789 -5.5596 -4.8953 17 35 -3.1463 -4.7480 -6.3667 18 6 -2.8586 -6.5036 -4.1516 19 16 -1.7538 -7.0163 -2.8828 20 6 2.0052 -4.6206 -1.0121 21 6 1.8269 -3.6606 0.1689 22 1 -0.4850 0.8400 -0.0004 23 1 -0.6889 -2.6171 -0.6937 24 1 0.0880 -1.3424 -1.6695 25 1 1.2909 -3.0216 -2.9922 26 1 -0.4414 -3.4319 -2.9961 27 1 1.5404 -5.3957 -3.6044 28 1 1.1613 -6.6403 -2.3895 29 1 -0.4145 -4.4633 -5.0170 30 1 -3.8541 -6.8934 -4.3053 31 1 2.8211 -4.2713 -1.6448 32 1 2.2358 -5.6182 -0.6384 33 1 2.7784 -3.5353 0.6858 34 1 1.0846 -4.0597 0.8601 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070994851.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:18 Heat of formation + Delta-G solvation = 71.248491 kcal Electronic energy + Delta-G solvation = -18180.792858 eV Core-core repulsion = 15287.536800 eV Total energy + Delta-G solvation = -2893.256059 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 330.010 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.75878 -37.45931 -34.55682 -32.01719 -30.91384 -29.91379 -29.52217 -27.11193 -25.00647 -22.94944 -22.59414 -21.73222 -19.39675 -18.92361 -17.28210 -16.75871 -15.60242 -15.30775 -14.58694 -14.48063 -13.86073 -13.51263 -13.42445 -13.33065 -13.00060 -12.95883 -12.45205 -12.12422 -11.52710 -11.43082 -11.10856 -10.90558 -10.75559 -10.73549 -10.47253 -10.31164 -10.30275 -10.06391 -9.76538 -9.61491 -8.78873 -8.50662 -8.41996 -7.88670 -6.66505 -5.77619 -3.19099 0.78988 1.09124 1.67645 2.25471 2.39683 3.37455 3.45305 3.47286 4.38868 4.51192 4.72763 4.99842 5.20780 5.32521 5.40018 5.43581 5.58376 5.81464 5.88148 5.90535 6.01472 6.10945 6.16670 6.23390 6.31595 6.53471 6.68374 6.91734 7.23546 7.50575 7.63893 7.69739 7.81870 8.43949 9.21607 9.85043 10.43611 11.31122 Molecular weight = 330.01amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.003622 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.844862 B = 7728.357200 C = 8984.738532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.180 3.820 11 C 0.032 3.968 12 N -0.528 5.528 13 C 0.119 3.881 14 C -0.144 4.144 15 C -0.126 4.126 16 C -0.093 4.093 17 Br -0.038 7.038 18 C -0.198 4.198 19 S 0.160 5.840 20 C 0.045 3.955 21 C 0.149 3.851 22 H 0.253 0.747 23 H 0.026 0.974 24 H 0.088 0.912 25 H 0.025 0.975 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.146 0.854 30 H 0.171 0.829 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 -15.451 -12.109 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.054 3.946 11 C -0.097 4.097 12 N -0.253 5.253 13 C -0.011 4.011 14 C -0.262 4.262 15 C -0.157 4.157 16 C -0.185 4.185 17 Br 0.046 6.954 18 C -0.337 4.337 19 S 0.424 5.576 20 C -0.084 4.084 21 C 0.022 3.978 22 H 0.064 0.936 23 H 0.044 0.956 24 H 0.106 0.894 25 H 0.044 0.956 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.163 0.837 30 H 0.188 0.812 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.018 -16.167 -11.120 20.524 hybrid contribution 1.147 1.980 -1.412 2.689 sum -4.871 -14.188 -12.532 19.547 Atomic orbital electron populations 1.70037 1.05227 1.25391 1.54039 1.25022 0.95280 0.98348 1.00997 0.86247 0.79325 0.84049 0.77303 1.20305 1.21566 1.21695 1.19227 0.92588 0.84805 1.41597 0.91611 1.44158 1.34425 1.01276 1.52020 1.20934 0.88903 0.96493 0.88260 1.23078 0.98957 0.88904 0.98795 1.62014 1.34902 1.05802 1.22571 1.20575 0.89324 0.97186 0.94007 1.24418 1.00894 1.01546 0.99392 1.19892 0.94599 1.02404 0.98805 1.20611 0.96907 1.02091 0.98941 1.96685 1.78212 1.81026 1.39505 1.25666 1.04727 1.03136 1.00150 1.84314 1.05318 1.38495 1.29487 1.22645 0.89336 0.99571 0.96836 1.20965 0.97862 0.86514 0.92442 0.93643 0.95578 0.89364 0.95648 0.91722 0.93195 0.90038 0.83685 0.81175 0.95200 0.91928 0.92543 0.95648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 11.16 55.49 0.62 -25.81 16 2 C 0.00 0.06 4.93 -17.43 -0.09 -0.03 16 3 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.25 -6.97 9.63 -15.06 -0.15 -7.12 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.60 -15.12 3.03 -171.74 -0.52 -15.64 16 10 C 0.18 4.40 5.45 -3.37 -0.02 4.38 16 11 C 0.03 0.62 5.44 -3.46 -0.02 0.60 16 12 N -0.53 -9.17 4.62 -235.46 -1.09 -10.25 16 13 C 0.12 1.63 5.46 -4.98 -0.03 1.60 16 14 C -0.14 -1.91 5.45 -36.00 -0.20 -2.10 16 15 C -0.13 -1.67 8.28 -41.19 -0.34 -2.01 16 16 C -0.09 -1.16 6.17 -41.18 -0.25 -1.41 16 17 Br -0.04 -0.43 33.87 -68.01 -2.30 -2.74 16 18 C -0.20 -2.22 11.05 29.05 0.32 -1.90 16 19 S 0.16 1.86 23.33 -107.50 -2.51 -0.65 16 20 C 0.05 0.79 5.62 -3.70 -0.02 0.77 16 21 C 0.15 3.14 6.69 -3.60 -0.02 3.12 16 22 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 23 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 1.20 5.84 -51.93 -0.30 0.90 16 27 H 0.05 0.67 8.13 -51.93 -0.42 0.24 16 28 H 0.08 0.98 7.97 -51.93 -0.41 0.57 16 29 H 0.15 1.90 8.00 -52.49 -0.42 1.48 16 30 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.91 7.99 -51.93 -0.41 0.50 16 33 H 0.06 1.14 7.95 -51.93 -0.41 0.73 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -29.50 309.90 -11.34 -40.84 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -4.37 Total: -3.02 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.81 Total: -4.11 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.99 Total: -51.71 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.51 Total: -0.65 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.30 Total: -2.74 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.50 -11.34 -40.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994851.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.089 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds