Wall clock time and date at job start Tue Mar 31 2020 05:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 111.00154 * 2 1 4 4 C 1.52999 * 109.47019 * 74.15796 * 3 2 1 5 5 H 1.09002 * 109.47153 * 53.19765 * 4 3 2 6 6 C 1.47198 * 109.47253 * 293.19259 * 4 3 2 7 7 N 3.69162 * 53.36863 * 39.13572 * 2 1 3 8 8 C 1.53004 * 109.46826 * 173.19360 * 4 3 2 9 9 C 1.50703 * 109.47027 * 185.00261 * 8 4 3 10 10 H 1.08005 * 119.99809 * 359.97438 * 9 8 4 11 11 C 1.37876 * 120.00150 * 179.97438 * 9 8 4 12 12 N 1.31510 * 119.99933 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99889 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47218 * 60.00467 * 13 11 9 15 15 H 1.48501 * 109.46774 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47673 * 300.00270 * 13 11 9 17 17 C 1.46907 * 111.00347 * 236.04407 * 2 1 3 18 18 C 1.52998 * 109.46854 * 287.66423 * 17 2 1 19 19 H 1.09001 * 109.88056 * 55.46176 * 18 17 2 20 20 C 1.54314 * 110.02550 * 294.33860 * 18 17 2 21 21 C 1.55142 * 103.01738 * 218.23646 * 20 18 17 22 22 C 1.54902 * 101.65353 * 35.65289 * 21 20 18 23 23 N 1.47449 * 109.88542 * 176.48378 * 18 17 2 24 24 C 1.39044 * 110.99920 * 356.31616 * 23 18 17 25 25 C 1.39483 * 120.15673 * 268.92688 * 24 23 18 26 26 C 1.38555 * 117.90446 * 180.02562 * 25 24 23 27 27 C 1.38817 * 118.04340 * 0.02562 * 26 25 24 28 28 N 1.31797 * 120.01124 * 0.02562 * 27 26 25 29 29 N 1.28350 * 122.28059 * 359.65818 * 28 27 26 30 30 H 1.08995 * 109.47070 * 174.76759 * 1 2 3 31 31 H 1.09001 * 109.47363 * 294.77368 * 1 2 3 32 32 H 1.09002 * 109.46725 * 54.77201 * 1 2 3 33 33 H 1.09003 * 109.47230 * 194.16203 * 3 2 1 34 34 H 1.08999 * 109.46806 * 314.16182 * 3 2 1 35 35 H 1.09004 * 109.46862 * 304.99953 * 8 4 3 36 36 H 1.09000 * 109.47237 * 65.00450 * 8 4 3 37 37 H 0.97001 * 120.00021 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.47185 * 167.66620 * 17 2 1 39 39 H 1.08999 * 109.46523 * 47.66509 * 17 2 1 40 40 H 1.09001 * 110.70840 * 336.61349 * 20 18 17 41 41 H 1.08997 * 110.70904 * 99.85385 * 20 18 17 42 42 H 1.09004 * 110.98954 * 277.56087 * 21 20 18 43 43 H 1.09002 * 111.02191 * 153.75731 * 21 20 18 44 44 H 1.08997 * 110.37290 * 204.09956 * 22 21 20 45 45 H 1.08997 * 110.37521 * 81.76017 * 22 21 20 46 46 H 1.08009 * 121.04413 * 0.02649 * 25 24 23 47 47 H 1.08004 * 120.97914 * 180.02562 * 26 25 24 48 48 H 1.07994 * 119.99270 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.8106 1.9887 1.3877 5 1 2.2454 1.3297 2.1393 6 6 0.3746 2.1632 1.6598 7 7 -0.7337 2.2979 1.8698 8 6 2.5082 3.3495 1.4376 9 6 2.4320 3.9020 2.8376 10 1 1.9353 3.3391 3.6140 11 6 2.9964 5.1262 3.1273 12 7 3.6008 5.8119 2.1818 13 14 2.9013 5.8113 4.8625 14 1 3.5715 4.8761 5.8014 15 1 3.5796 7.1315 4.9112 16 1 1.4779 5.9707 5.2545 17 6 1.9955 -0.7660 -1.1376 18 6 1.7697 -2.2597 -0.8948 19 1 0.7126 -2.4492 -0.7084 20 6 2.6084 -2.7318 0.3114 21 6 3.0881 -4.1407 -0.1266 22 6 3.3079 -3.9380 -1.6464 23 7 2.2183 -3.0319 -2.0681 24 6 2.6396 -2.1873 -3.0891 25 6 1.7356 -1.7569 -4.0602 26 6 2.2056 -0.9166 -5.0566 27 6 3.5457 -0.5555 -5.0275 28 7 4.3305 -1.0106 -4.0714 29 7 3.9006 -1.7845 -3.1421 30 1 -0.3633 -1.0233 -0.0937 31 1 -0.3634 0.4306 0.9331 32 1 -0.3633 0.5928 -0.8395 33 1 3.0559 1.3536 -0.2514 34 1 1.4573 1.9672 -0.7372 35 1 3.5530 3.2330 1.1493 36 1 2.0156 4.0358 0.7488 37 1 3.9975 6.6733 2.3855 38 1 3.0630 -0.5724 -1.2431 39 1 1.4796 -0.4639 -2.0489 40 1 3.4581 -2.0685 0.4732 41 1 1.9920 -2.7960 1.2080 42 1 2.3192 -4.8904 0.0602 43 1 4.0205 -4.4083 0.3705 44 1 3.2335 -4.8906 -2.1710 45 1 4.2779 -3.4767 -1.8314 46 1 0.7019 -2.0688 -4.0362 47 1 1.5487 -0.5531 -5.8330 48 1 3.9455 0.0977 -5.7890 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071876892.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:42 Heat of formation + Delta-G solvation = 114.371659 kcal Electronic energy + Delta-G solvation = -28444.933251 eV Core-core repulsion = 24729.332420 eV Total energy + Delta-G solvation = -3715.600831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.75096 -39.47862 -38.00404 -35.58719 -33.78591 -33.70475 -33.27120 -31.93089 -30.13254 -29.80150 -27.31835 -26.42606 -24.92203 -24.43399 -23.98961 -21.95903 -21.61963 -21.28331 -20.21674 -17.85091 -17.38679 -16.97456 -16.67981 -16.60279 -16.36609 -15.33875 -15.20207 -14.74868 -14.56617 -14.50730 -14.38537 -13.70101 -13.50612 -13.46591 -13.14609 -13.06403 -12.67912 -12.49718 -12.27272 -12.13163 -11.95943 -11.77298 -11.40762 -11.38389 -11.30080 -11.13976 -11.00344 -10.86236 -10.79284 -10.73913 -10.55202 -10.42804 -10.29450 -10.25862 -9.91118 -9.54326 -9.26733 -8.72103 -8.45642 -8.29739 -6.09761 -4.13218 0.53918 0.61833 3.12585 3.30343 3.31197 3.35337 3.38809 3.54635 3.61129 3.82697 4.02688 4.25829 4.40371 4.43908 4.44917 4.54002 4.62158 4.65089 4.76635 4.83486 5.03529 5.13980 5.17508 5.27216 5.28393 5.37206 5.45312 5.50081 5.52200 5.57943 5.62108 5.67682 5.71866 5.76737 5.83521 5.88631 6.01132 6.04165 6.07889 6.17282 6.32393 6.42723 6.52240 6.75624 7.03443 7.06857 7.42125 7.51218 7.84726 8.22151 8.37295 8.46933 8.90921 9.52266 11.01126 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.002954 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.505139 B = 9476.036930 C =10032.502520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.532 5.532 3 C 0.064 3.936 4 C 0.010 3.990 5 H 0.111 0.889 6 C 0.253 3.747 7 N -0.482 5.482 8 C 0.033 3.967 9 C -0.527 4.527 10 H 0.056 0.944 11 C 0.063 3.937 12 N -0.892 5.892 13 Si 0.892 3.108 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.277 1.277 17 C 0.037 3.963 18 C 0.085 3.915 19 H 0.096 0.904 20 C -0.119 4.119 21 C -0.131 4.131 22 C 0.036 3.964 23 N -0.472 5.472 24 C 0.250 3.750 25 C -0.107 4.107 26 C -0.111 4.111 27 C 0.027 3.973 28 N -0.228 5.228 29 N -0.274 5.274 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.023 0.977 33 H 0.090 0.910 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.023 0.977 37 H 0.263 0.737 38 H 0.082 0.918 39 H 0.033 0.967 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.151 0.849 47 H 0.151 0.849 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.311 -19.694 -14.621 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.256 5.256 3 C -0.065 4.065 4 C -0.012 4.012 5 H 0.129 0.871 6 C -0.062 4.062 7 N -0.159 5.159 8 C -0.006 4.006 9 C -0.565 4.565 10 H 0.075 0.925 11 C -0.139 4.139 12 N -0.530 5.530 13 Si 0.719 3.281 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.203 1.203 17 C -0.092 4.092 18 C -0.021 4.021 19 H 0.114 0.886 20 C -0.157 4.157 21 C -0.169 4.169 22 C -0.091 4.091 23 N -0.195 5.195 24 C 0.014 3.986 25 C -0.137 4.137 26 C -0.140 4.140 27 C -0.139 4.139 28 N -0.069 5.069 29 N -0.120 5.120 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.042 0.958 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.051 0.949 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.169 0.831 47 H 0.169 0.831 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.622 -19.891 -13.413 24.046 hybrid contribution -0.850 1.426 -0.412 1.711 sum -2.472 -18.465 -13.825 23.199 Atomic orbital electron populations 1.22842 0.87454 1.01478 1.02408 1.61976 1.07811 1.14354 1.41447 1.22299 1.00949 0.86711 0.96495 1.19314 0.83110 1.02203 0.96573 0.87080 1.29134 0.94867 0.90365 0.91879 1.81040 1.13613 1.11284 1.09983 1.19164 0.95860 0.87383 0.98192 1.21091 1.36662 1.03972 0.94779 0.92528 1.24947 0.94969 0.96784 0.97199 1.69927 1.36701 1.13844 1.32536 0.86650 0.78351 0.78272 0.84793 1.19977 1.21178 1.20262 1.22825 1.00858 0.93394 0.92150 1.22494 1.00765 0.91009 0.87837 0.88649 1.22685 1.00142 0.95562 0.97349 1.22741 1.01928 0.97785 0.94422 1.23186 0.93983 0.96066 0.95866 1.61737 1.34606 1.15505 1.07691 1.21491 0.91072 0.91983 0.94079 1.22124 1.01807 0.96649 0.93155 1.22415 0.96916 0.96002 0.98653 1.24306 0.91875 0.98911 0.98784 1.72871 1.30819 1.04411 0.98776 1.73185 1.14618 1.07838 1.16343 0.91640 0.89765 0.95800 0.89157 0.94233 0.94264 0.95846 0.92724 0.89939 0.94939 0.90217 0.89896 0.90798 0.90258 0.90140 0.90112 0.83101 0.83116 0.81043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 8.75 60.06 0.53 0.61 16 2 N -0.53 -7.21 4.42 -242.91 -1.07 -8.28 16 3 C 0.06 1.00 4.65 -3.82 -0.02 0.98 16 4 C 0.01 0.19 2.41 -93.41 -0.22 -0.04 16 5 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 6 C 0.25 5.12 10.93 -20.76 -0.23 4.89 16 7 N -0.48 -10.36 17.58 42.15 0.74 -9.62 16 8 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 9 C -0.53 -14.09 8.60 -34.44 -0.30 -14.39 16 10 H 0.06 1.50 7.59 -52.48 -0.40 1.10 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 13 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 17 C 0.04 0.45 3.08 -3.82 -0.01 0.43 16 18 C 0.09 0.89 3.45 -66.72 -0.23 0.66 16 19 H 0.10 0.98 6.52 -51.93 -0.34 0.64 16 20 C -0.12 -1.18 6.25 -24.91 -0.16 -1.34 16 21 C -0.13 -1.08 7.08 -24.59 -0.17 -1.26 16 22 C 0.04 0.34 6.62 -2.30 -0.02 0.32 16 23 N -0.47 -4.80 5.17 -162.37 -0.84 -5.63 16 24 C 0.25 2.69 3.91 -154.78 -0.60 2.09 16 25 C -0.11 -0.93 8.86 -39.00 -0.35 -1.27 16 26 C -0.11 -0.80 10.20 -39.25 -0.40 -1.20 16 27 C 0.03 0.23 11.31 -17.35 -0.20 0.04 16 28 N -0.23 -2.78 11.49 30.57 0.35 -2.43 16 29 N -0.27 -3.44 8.78 31.23 0.27 -3.16 16 30 H 0.06 0.75 6.39 -51.93 -0.33 0.42 16 31 H 0.08 1.33 4.40 -51.93 -0.23 1.10 16 32 H 0.02 0.33 7.99 -51.93 -0.41 -0.09 16 33 H 0.09 1.36 7.67 -51.93 -0.40 0.96 16 34 H 0.04 0.63 7.90 -51.93 -0.41 0.22 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.08 1.13 6.51 -51.93 -0.34 0.79 16 39 H 0.03 0.40 6.12 -51.93 -0.32 0.08 16 40 H 0.08 0.90 7.80 -51.93 -0.41 0.50 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.88 6.54 -51.93 -0.34 0.54 16 46 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 47 H 0.15 0.59 8.06 -52.48 -0.42 0.17 16 48 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -31.17 382.46 -8.95 -40.12 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.28 Total: -1.02 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -2.59 Total: -7.18 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.19 Total: -54.05 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.17 -8.95 -40.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071876892.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.492 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds