Wall clock time and date at job start Tue Mar 31 2020 05:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 111.00154 * 2 1 4 4 C 1.52999 * 109.47019 * 74.15796 * 3 2 1 5 5 H 1.09002 * 109.47153 * 53.19765 * 4 3 2 6 6 C 1.47198 * 109.47253 * 293.19259 * 4 3 2 7 7 N 3.69162 * 53.36863 * 39.13572 * 2 1 3 8 8 C 1.53004 * 109.46826 * 173.19360 * 4 3 2 9 9 C 1.50703 * 109.47027 * 185.00261 * 8 4 3 10 10 H 1.08005 * 119.99809 * 359.97438 * 9 8 4 11 11 C 1.37876 * 120.00150 * 179.97438 * 9 8 4 12 12 N 1.31510 * 119.99933 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99889 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47218 * 60.00467 * 13 11 9 15 15 H 1.48501 * 109.46774 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47673 * 300.00270 * 13 11 9 17 17 C 1.46907 * 111.00347 * 236.04407 * 2 1 3 18 18 C 1.52998 * 109.46854 * 287.66423 * 17 2 1 19 19 H 1.09001 * 109.88056 * 55.46176 * 18 17 2 20 20 C 1.54314 * 110.02550 * 294.33860 * 18 17 2 21 21 C 1.55142 * 103.01738 * 218.23646 * 20 18 17 22 22 C 1.54902 * 101.65353 * 35.65289 * 21 20 18 23 23 N 1.47449 * 109.88542 * 176.48378 * 18 17 2 24 24 C 1.39044 * 110.99920 * 356.31616 * 23 18 17 25 25 C 1.39483 * 120.15673 * 268.92688 * 24 23 18 26 26 C 1.38555 * 117.90446 * 180.02562 * 25 24 23 27 27 C 1.38817 * 118.04340 * 0.02562 * 26 25 24 28 28 N 1.31797 * 120.01124 * 0.02562 * 27 26 25 29 29 N 1.28350 * 122.28059 * 359.65818 * 28 27 26 30 30 H 1.08995 * 109.47070 * 174.76759 * 1 2 3 31 31 H 1.09001 * 109.47363 * 294.77368 * 1 2 3 32 32 H 1.09002 * 109.46725 * 54.77201 * 1 2 3 33 33 H 1.09003 * 109.47230 * 194.16203 * 3 2 1 34 34 H 1.08999 * 109.46806 * 314.16182 * 3 2 1 35 35 H 1.09004 * 109.46862 * 304.99953 * 8 4 3 36 36 H 1.09000 * 109.47237 * 65.00450 * 8 4 3 37 37 H 0.97001 * 120.00021 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.47185 * 167.66620 * 17 2 1 39 39 H 1.08999 * 109.46523 * 47.66509 * 17 2 1 40 40 H 1.09001 * 110.70840 * 336.61349 * 20 18 17 41 41 H 1.08997 * 110.70904 * 99.85385 * 20 18 17 42 42 H 1.09004 * 110.98954 * 277.56087 * 21 20 18 43 43 H 1.09002 * 111.02191 * 153.75731 * 21 20 18 44 44 H 1.08997 * 110.37290 * 204.09956 * 22 21 20 45 45 H 1.08997 * 110.37521 * 81.76017 * 22 21 20 46 46 H 1.08009 * 121.04413 * 0.02649 * 25 24 23 47 47 H 1.08004 * 120.97914 * 180.02562 * 26 25 24 48 48 H 1.07994 * 119.99270 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.8106 1.9887 1.3877 5 1 2.2454 1.3297 2.1393 6 6 0.3746 2.1632 1.6598 7 7 -0.7337 2.2979 1.8698 8 6 2.5082 3.3495 1.4376 9 6 2.4320 3.9020 2.8376 10 1 1.9353 3.3391 3.6140 11 6 2.9964 5.1262 3.1273 12 7 3.6008 5.8119 2.1818 13 14 2.9013 5.8113 4.8625 14 1 3.5715 4.8761 5.8014 15 1 3.5796 7.1315 4.9112 16 1 1.4779 5.9707 5.2545 17 6 1.9955 -0.7660 -1.1376 18 6 1.7697 -2.2597 -0.8948 19 1 0.7126 -2.4492 -0.7084 20 6 2.6084 -2.7318 0.3114 21 6 3.0881 -4.1407 -0.1266 22 6 3.3079 -3.9380 -1.6464 23 7 2.2183 -3.0319 -2.0681 24 6 2.6396 -2.1873 -3.0891 25 6 1.7356 -1.7569 -4.0602 26 6 2.2056 -0.9166 -5.0566 27 6 3.5457 -0.5555 -5.0275 28 7 4.3305 -1.0106 -4.0714 29 7 3.9006 -1.7845 -3.1421 30 1 -0.3633 -1.0233 -0.0937 31 1 -0.3634 0.4306 0.9331 32 1 -0.3633 0.5928 -0.8395 33 1 3.0559 1.3536 -0.2514 34 1 1.4573 1.9672 -0.7372 35 1 3.5530 3.2330 1.1493 36 1 2.0156 4.0358 0.7488 37 1 3.9975 6.6733 2.3855 38 1 3.0630 -0.5724 -1.2431 39 1 1.4796 -0.4639 -2.0489 40 1 3.4581 -2.0685 0.4732 41 1 1.9920 -2.7960 1.2080 42 1 2.3192 -4.8904 0.0602 43 1 4.0205 -4.4083 0.3705 44 1 3.2335 -4.8906 -2.1710 45 1 4.2779 -3.4767 -1.8314 46 1 0.7019 -2.0688 -4.0362 47 1 1.5487 -0.5531 -5.8330 48 1 3.9455 0.0977 -5.7890 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071876892.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:41 Heat of formation + Delta-G solvation = 94.520011 kcal Electronic energy + Delta-G solvation = -28445.794083 eV Core-core repulsion = 24729.332420 eV Total energy + Delta-G solvation = -3716.461663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.49251 -40.34783 -39.27235 -37.00949 -35.63460 -34.41573 -33.98192 -33.66933 -31.15936 -30.54987 -28.86348 -27.64676 -25.80367 -25.47952 -24.87505 -23.68282 -22.85582 -22.04727 -21.06875 -18.73716 -18.46068 -18.33479 -18.03598 -17.58758 -17.35471 -16.72106 -16.29738 -16.01769 -15.77066 -15.55710 -15.20096 -14.78119 -14.57304 -14.42983 -14.28556 -14.14776 -14.10449 -13.92375 -13.70898 -13.56156 -13.10669 -12.95420 -12.81428 -12.63631 -12.53539 -12.43463 -12.17800 -12.09969 -12.05668 -12.01046 -11.86552 -11.52121 -11.41900 -11.26143 -11.11596 -11.00980 -10.64678 -10.57006 -9.56416 -9.37300 -8.21076 -6.30111 -0.11408 -0.06530 1.40744 1.41729 1.49263 1.91443 1.94813 2.34822 2.41102 2.58606 2.82209 3.13179 3.19896 3.26956 3.59546 3.66360 3.73699 3.79581 3.88257 3.97953 4.08259 4.20881 4.22134 4.24562 4.26903 4.36778 4.42849 4.51669 4.58678 4.67138 4.70212 4.80730 4.83087 4.86961 4.91848 4.94110 4.97413 5.07951 5.13970 5.20703 5.28573 5.40771 5.42407 5.56099 5.63910 5.75782 5.85487 5.94988 6.03272 6.17233 6.71619 6.84041 7.38721 7.74282 8.89847 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.002954 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.505139 B = 9476.036930 C =10032.502520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.530 5.530 3 C 0.075 3.925 4 C 0.023 3.977 5 H 0.122 0.878 6 C 0.261 3.739 7 N -0.502 5.502 8 C 0.039 3.961 9 C -0.540 4.540 10 H 0.056 0.944 11 C 0.012 3.988 12 N -0.924 5.924 13 Si 0.950 3.050 14 H -0.263 1.263 15 H -0.282 1.282 16 H -0.279 1.279 17 C 0.049 3.951 18 C 0.089 3.911 19 H 0.104 0.896 20 C -0.120 4.120 21 C -0.121 4.121 22 C 0.035 3.965 23 N -0.467 5.467 24 C 0.235 3.765 25 C -0.113 4.113 26 C -0.099 4.099 27 C 0.024 3.976 28 N -0.270 5.270 29 N -0.305 5.305 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.021 0.979 33 H 0.094 0.906 34 H 0.036 0.964 35 H 0.031 0.969 36 H -0.001 1.001 37 H 0.264 0.736 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.171 0.829 47 H 0.190 0.810 48 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 -20.925 -15.088 25.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.254 5.254 3 C -0.054 4.054 4 C 0.001 3.999 5 H 0.140 0.860 6 C -0.054 4.054 7 N -0.180 5.180 8 C 0.001 3.999 9 C -0.578 4.578 10 H 0.074 0.926 11 C -0.187 4.187 12 N -0.564 5.564 13 Si 0.775 3.225 14 H -0.187 1.187 15 H -0.207 1.207 16 H -0.205 1.205 17 C -0.080 4.080 18 C -0.017 4.017 19 H 0.122 0.878 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.092 4.092 23 N -0.191 5.191 24 C -0.002 4.002 25 C -0.144 4.144 26 C -0.128 4.128 27 C -0.142 4.142 28 N -0.110 5.110 29 N -0.149 5.149 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.112 0.888 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.189 0.811 47 H 0.208 0.792 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.661 -21.143 -13.877 25.430 hybrid contribution -0.532 1.815 -0.365 1.926 sum -3.192 -19.328 -14.241 24.220 Atomic orbital electron populations 1.22780 0.87065 1.02790 1.01066 1.61906 1.08036 1.12964 1.42451 1.22090 1.01306 0.87819 0.94193 1.19148 0.81809 1.00023 0.98899 0.86012 1.29324 0.95023 0.89811 0.91235 1.81034 1.14286 1.11834 1.10819 1.18970 0.95628 0.89278 0.96061 1.21496 1.36016 1.04130 0.96168 0.92609 1.25731 0.94860 0.97340 1.00789 1.70031 1.37738 1.14261 1.34355 0.85724 0.78131 0.77928 0.80679 1.18732 1.20695 1.20468 1.22713 0.99540 0.94318 0.91405 1.22468 1.01234 0.89713 0.88305 0.87815 1.22657 0.99487 0.96255 0.97407 1.22717 1.02699 0.97026 0.93456 1.23195 0.93025 0.96164 0.96817 1.61851 1.34631 1.15245 1.07359 1.21711 0.91195 0.92518 0.94816 1.22448 1.02425 0.96604 0.92873 1.22851 0.96660 0.94521 0.98729 1.24846 0.92606 0.98472 0.98259 1.72771 1.32503 1.05699 1.00070 1.73090 1.15787 1.08851 1.17217 0.89198 0.91881 0.96048 0.88818 0.94620 0.95051 0.98251 0.92669 0.91744 0.94823 0.92095 0.89497 0.89386 0.89514 0.89114 0.92027 0.81141 0.79242 0.78313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 8.75 127.69 1.12 1.41 16 2 N -0.53 -13.83 4.42 -922.44 -4.08 -17.91 16 3 C 0.08 2.31 4.65 86.30 0.40 2.71 16 4 C 0.02 0.86 2.41 -12.60 -0.03 0.83 16 5 H 0.12 4.30 8.14 -2.39 -0.02 4.29 16 6 C 0.26 10.49 10.93 89.44 0.98 11.46 16 7 N -0.50 -21.38 17.58 20.00 0.35 -21.03 16 8 C 0.04 1.87 4.42 29.85 0.13 2.00 16 9 C -0.54 -28.98 8.60 25.60 0.22 -28.76 16 10 H 0.06 2.94 7.59 -2.91 -0.02 2.92 16 11 C 0.01 0.66 5.46 84.66 0.46 1.12 16 12 N -0.92 -53.73 13.29 21.45 0.28 -53.45 16 13 Si 0.95 43.70 29.54 68.60 2.03 45.72 16 14 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 17 C 0.05 1.14 3.08 86.30 0.27 1.41 16 18 C 0.09 1.74 3.45 45.26 0.16 1.89 16 19 H 0.10 1.87 6.52 -2.39 -0.02 1.85 16 20 C -0.12 -2.26 6.25 31.77 0.20 -2.06 16 21 C -0.12 -1.83 7.08 31.98 0.23 -1.61 16 22 C 0.03 0.63 6.62 86.77 0.57 1.20 16 23 N -0.47 -8.93 5.17 -667.62 -3.45 -12.37 16 24 C 0.23 4.86 3.91 133.11 0.52 5.38 16 25 C -0.11 -1.73 8.86 22.65 0.20 -1.53 16 26 C -0.10 -1.17 10.20 22.48 0.23 -0.94 16 27 C 0.02 0.39 11.31 84.84 0.96 1.35 16 28 N -0.27 -6.61 11.49 -57.20 -0.66 -7.27 16 29 N -0.30 -7.71 8.78 -55.10 -0.48 -8.20 16 30 H 0.09 1.84 6.39 -2.39 -0.02 1.83 16 31 H 0.06 1.92 4.40 -2.39 -0.01 1.91 16 32 H 0.02 0.55 7.99 -2.39 -0.02 0.53 16 33 H 0.09 2.83 7.67 -2.39 -0.02 2.81 16 34 H 0.04 1.13 7.90 -2.39 -0.02 1.11 16 35 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.06 1.78 6.51 -2.39 -0.02 1.76 16 39 H 0.03 0.78 6.12 -2.39 -0.01 0.77 16 40 H 0.06 1.38 7.80 -2.39 -0.02 1.36 16 41 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 42 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.06 1.37 6.54 -2.39 -0.02 1.35 16 46 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 47 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 48 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -67.85 382.46 1.56 -66.29 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.96 Total: 12.35 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 6.61 Total: -4.14 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -8.03 Total: -120.23 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -67.85 1.56 -66.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071876892.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.811 kcal (2) G-P(sol) polarization free energy of solvation -67.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds