Wall clock time and date at job start Tue Mar 31 2020 05:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46908 * 110.99986 * 2 1 4 4 C 1.53001 * 109.47064 * 293.95714 * 3 2 1 5 5 H 1.08993 * 109.47604 * 54.99659 * 4 3 2 6 6 C 1.47204 * 109.46794 * 294.99586 * 4 3 2 7 7 N 3.66498 * 112.02703 * 284.54491 * 2 1 3 8 8 C 1.53003 * 109.46900 * 175.00065 * 4 3 2 9 9 C 1.50698 * 109.47190 * 184.99605 * 8 4 3 10 10 H 1.08008 * 119.99514 * 0.02562 * 9 8 4 11 11 C 1.37871 * 120.00081 * 179.97438 * 9 8 4 12 12 N 1.31509 * 120.00308 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 119.99929 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46768 * 180.02562 * 13 11 9 15 15 H 1.48499 * 109.46891 * 300.00550 * 13 11 9 16 16 H 1.48490 * 109.46832 * 60.00355 * 13 11 9 17 17 C 1.46901 * 111.00256 * 123.95604 * 2 1 3 18 18 C 1.52995 * 109.46982 * 82.01029 * 17 2 1 19 19 H 1.09000 * 110.33244 * 68.16457 * 18 17 2 20 20 C 1.54909 * 110.37279 * 190.41541 * 18 17 2 21 21 C 1.55260 * 101.59799 * 155.81886 * 20 18 17 22 22 C 1.54325 * 103.08598 * 324.49046 * 21 20 18 23 23 N 1.47439 * 107.23070 * 22.20291 * 22 21 20 24 24 C 1.39053 * 110.99523 * 123.26132 * 23 22 21 25 25 C 1.39472 * 120.15956 * 59.15587 * 24 23 22 26 26 C 1.38560 * 117.90443 * 180.02562 * 25 24 23 27 27 C 1.38815 * 118.03984 * 0.02562 * 26 25 24 28 28 N 1.31786 * 120.01486 * 0.02562 * 27 26 25 29 29 N 1.28354 * 122.28585 * 359.66030 * 28 27 26 30 30 H 1.09008 * 109.46989 * 67.59056 * 1 2 3 31 31 H 1.08998 * 109.46981 * 187.58908 * 1 2 3 32 32 H 1.09001 * 109.47259 * 307.58982 * 1 2 3 33 33 H 1.08998 * 109.46965 * 173.95573 * 3 2 1 34 34 H 1.09000 * 109.46365 * 53.95557 * 3 2 1 35 35 H 1.09004 * 109.47125 * 64.99405 * 8 4 3 36 36 H 1.08997 * 109.46510 * 304.99626 * 8 4 3 37 37 H 0.96992 * 120.00562 * 179.97438 * 12 11 9 38 38 H 1.08991 * 109.47249 * 202.01416 * 17 2 1 39 39 H 1.09004 * 109.46752 * 322.01624 * 17 2 1 40 40 H 1.09002 * 110.99045 * 273.99499 * 20 18 17 41 41 H 1.08998 * 110.99025 * 37.80862 * 20 18 17 42 42 H 1.09000 * 110.74266 * 206.05247 * 21 20 18 43 43 H 1.08999 * 110.60929 * 82.85851 * 21 20 18 44 44 H 1.09006 * 109.88436 * 262.80003 * 22 21 20 45 45 H 1.09000 * 110.02446 * 141.68745 * 22 21 20 46 46 H 1.08000 * 121.04995 * 359.97438 * 25 24 23 47 47 H 1.08007 * 120.98197 * 179.97438 * 26 25 24 48 48 H 1.08001 * 119.99513 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 1 0.5532 2.0059 -1.4691 6 6 2.3156 1.3778 -2.4303 7 7 2.8435 0.8532 -3.2886 8 6 2.0699 3.5225 -1.2688 9 6 1.6031 4.2290 -2.5154 10 1 1.0487 3.6872 -3.2676 11 6 1.8829 5.5670 -2.6953 12 7 2.5575 6.2267 -1.7793 13 14 1.3035 6.4428 -4.2404 14 1 1.7293 7.8646 -4.1924 15 1 1.8987 5.7882 -5.4330 16 1 -0.1773 6.3715 -4.3239 17 6 1.9955 -0.7660 1.1375 18 6 1.9911 -2.2569 0.7942 19 1 2.7222 -2.4680 0.0138 20 6 2.2912 -3.1021 2.0572 21 6 1.6382 -4.4609 1.6859 22 6 0.3914 -4.0406 0.8795 23 7 0.6420 -2.6822 0.3642 24 6 0.5258 -2.6455 -1.0210 25 6 -0.6727 -3.0108 -1.6336 26 6 -0.7367 -2.9574 -3.0167 27 6 0.3948 -2.5448 -3.7068 28 7 1.4875 -2.2185 -3.0462 29 7 1.5521 -2.2598 -1.7650 30 1 -0.3633 0.3918 -0.9501 31 1 -0.3633 -1.0186 0.1357 32 1 -0.3634 0.6269 0.8143 33 1 3.0797 1.3444 0.1082 34 1 1.5611 1.9273 0.8310 35 1 3.1570 3.5745 -1.2072 36 1 1.6329 4.0032 -0.3936 37 1 2.7546 7.1679 -1.9060 38 1 3.0151 -0.4453 1.3508 39 1 1.3695 -0.5930 2.0130 40 1 3.3653 -3.2113 2.2078 41 1 1.8170 -2.6697 2.9382 42 1 1.3503 -5.0088 2.5832 43 1 2.3131 -5.0553 1.0700 44 1 -0.4850 -4.0355 1.5278 45 1 0.2343 -4.7291 0.0493 46 1 -1.5240 -3.3260 -1.0484 47 1 -1.6401 -3.2297 -3.5424 48 1 0.3801 -2.4920 -4.7855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071876893.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:46 Heat of formation + Delta-G solvation = 115.704223 kcal Electronic energy + Delta-G solvation = -29187.510637 eV Core-core repulsion = 25471.967590 eV Total energy + Delta-G solvation = -3715.543047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.35995 -39.27466 -37.52144 -35.27751 -33.64275 -33.42978 -32.98665 -31.74450 -30.10472 -29.63714 -27.13594 -26.41945 -24.60756 -24.28806 -23.56308 -21.74054 -21.42449 -21.03434 -20.28608 -17.87132 -17.03341 -16.64491 -16.48833 -16.42749 -16.16472 -15.04785 -14.94894 -14.53862 -14.42299 -14.23673 -14.14737 -13.85095 -13.34780 -13.17807 -12.87847 -12.79435 -12.61836 -12.27745 -12.16059 -11.80759 -11.68754 -11.58872 -11.34837 -11.20739 -11.12151 -11.04099 -10.99108 -10.89763 -10.66432 -10.51408 -10.43865 -10.15727 -10.13108 -9.97158 -9.41968 -9.38676 -9.12884 -8.45295 -8.37749 -7.86275 -6.02089 -4.04429 0.92684 1.06648 3.27855 3.35567 3.39357 3.43680 3.74634 3.98085 4.08235 4.15702 4.20850 4.43707 4.48969 4.50630 4.61102 4.68663 4.70883 4.86061 5.01649 5.09866 5.15550 5.22010 5.26074 5.34597 5.36089 5.44711 5.50729 5.60023 5.61977 5.68917 5.71218 5.79605 5.80351 5.84617 5.97940 6.01791 6.06875 6.18314 6.25545 6.36264 6.54167 6.60837 6.66368 6.89386 7.41042 7.43910 7.52742 7.64725 7.93677 8.33188 8.89137 8.99207 9.00894 9.60174 11.08991 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.016281 B = 0.003502 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.357973 B = 7993.146720 C = 9027.603925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.528 5.528 3 C 0.064 3.936 4 C 0.014 3.986 5 H 0.091 0.909 6 C 0.245 3.755 7 N -0.460 5.460 8 C 0.033 3.967 9 C -0.522 4.522 10 H 0.054 0.946 11 C 0.062 3.938 12 N -0.893 5.893 13 Si 0.890 3.110 14 H -0.287 1.287 15 H -0.276 1.276 16 H -0.276 1.276 17 C 0.075 3.925 18 C 0.077 3.923 19 H 0.097 0.903 20 C -0.127 4.127 21 C -0.139 4.139 22 C 0.045 3.955 23 N -0.457 5.457 24 C 0.254 3.746 25 C -0.142 4.142 26 C -0.105 4.105 27 C 0.008 3.992 28 N -0.202 5.202 29 N -0.237 5.237 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.021 0.979 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.025 0.975 36 H 0.034 0.966 37 H 0.262 0.738 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.143 0.857 47 H 0.144 0.856 48 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 -23.344 9.446 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.251 5.251 3 C -0.065 4.065 4 C -0.008 4.008 5 H 0.109 0.891 6 C -0.073 4.073 7 N -0.136 5.136 8 C -0.006 4.006 9 C -0.560 4.560 10 H 0.073 0.927 11 C -0.139 4.139 12 N -0.532 5.532 13 Si 0.718 3.282 14 H -0.212 1.212 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.054 4.054 18 C -0.030 4.030 19 H 0.115 0.885 20 C -0.165 4.165 21 C -0.178 4.178 22 C -0.081 4.081 23 N -0.176 5.176 24 C 0.017 3.983 25 C -0.174 4.174 26 C -0.134 4.134 27 C -0.158 4.158 28 N -0.043 5.043 29 N -0.083 5.083 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.079 0.921 46 H 0.160 0.840 47 H 0.162 0.838 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.428 -23.325 7.950 25.233 hybrid contribution -2.062 0.496 -0.127 2.125 sum -7.490 -22.829 7.823 25.268 Atomic orbital electron populations 1.22852 0.87821 1.03237 1.00109 1.61862 1.07685 1.13548 1.42025 1.22275 1.00387 0.87404 0.96400 1.19111 0.98736 0.96504 0.86427 0.89115 1.28696 0.93306 0.91496 0.93787 1.80985 1.10000 1.11179 1.11467 1.19145 0.97579 0.85695 0.98188 1.21105 1.35734 0.94734 1.04432 0.92727 1.24939 0.95026 0.97541 0.96439 1.69927 1.39629 1.09588 1.34067 0.86675 0.79178 0.78537 0.83816 1.21215 1.20201 1.20153 1.21987 0.99951 0.91702 0.91777 1.22808 0.88272 0.95237 0.96729 0.88523 1.22818 1.01404 0.94475 0.97829 1.22774 0.96721 0.97901 1.00357 1.22956 0.99365 0.86812 0.99007 1.60859 1.29805 1.22263 1.04711 1.21400 0.91787 0.93886 0.91256 1.21873 0.98004 1.02160 0.95317 1.22235 0.99873 0.97019 0.94283 1.24213 0.91182 0.97916 1.02493 1.73053 1.23201 1.07166 1.00915 1.73297 1.24025 1.11627 0.99383 0.92639 0.88753 0.96063 0.90573 0.93489 0.95668 0.94805 0.92838 0.90531 0.94242 0.90118 0.90370 0.90207 0.91195 0.89480 0.92091 0.83963 0.83805 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 8.00 60.06 0.48 0.60 16 2 N -0.53 -7.87 3.25 -242.91 -0.79 -8.66 16 3 C 0.06 1.07 4.28 -3.82 -0.02 1.05 16 4 C 0.01 0.29 2.13 -93.40 -0.20 0.09 16 5 H 0.09 1.83 6.50 -51.93 -0.34 1.49 16 6 C 0.24 5.59 13.67 -20.76 -0.28 5.30 16 7 N -0.46 -11.22 18.54 42.15 0.78 -10.43 16 8 C 0.03 0.80 4.42 -27.88 -0.12 0.68 16 9 C -0.52 -14.57 8.60 -34.44 -0.30 -14.87 16 10 H 0.05 1.53 7.59 -52.48 -0.40 1.13 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 13 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.07 0.90 5.02 -3.83 -0.02 0.88 16 18 C 0.08 0.84 2.54 -66.19 -0.17 0.67 16 19 H 0.10 1.32 6.59 -51.93 -0.34 0.98 16 20 C -0.13 -0.97 6.51 -24.53 -0.16 -1.13 16 21 C -0.14 -0.92 6.94 -24.84 -0.17 -1.09 16 22 C 0.04 0.33 6.47 -2.83 -0.02 0.31 16 23 N -0.46 -4.72 2.95 -162.40 -0.48 -5.20 16 24 C 0.25 3.12 3.62 -154.76 -0.56 2.56 16 25 C -0.14 -1.43 9.00 -39.00 -0.35 -1.78 16 26 C -0.10 -1.03 10.20 -39.25 -0.40 -1.43 16 27 C 0.01 0.10 11.31 -17.36 -0.20 -0.09 16 28 N -0.20 -3.35 11.49 30.57 0.35 -3.00 16 29 N -0.24 -3.70 8.56 31.23 0.27 -3.44 16 30 H 0.05 0.88 6.74 -51.92 -0.35 0.53 16 31 H 0.09 1.23 4.18 -51.93 -0.22 1.01 16 32 H 0.02 0.29 8.03 -51.93 -0.42 -0.13 16 33 H 0.08 1.28 7.79 -51.93 -0.40 0.88 16 34 H 0.05 0.74 8.04 -51.93 -0.42 0.32 16 35 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.08 0.90 7.62 -51.93 -0.40 0.50 16 39 H 0.04 0.44 7.77 -51.93 -0.40 0.04 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.56 7.96 -51.93 -0.41 0.14 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.45 7.14 -51.93 -0.37 0.08 16 46 H 0.14 1.05 8.02 -52.49 -0.42 0.62 16 47 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 48 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -33.76 384.36 -8.35 -42.11 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.41 Total: -1.96 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -2.58 Total: -6.56 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.87 Total: -56.36 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.76 -8.35 -42.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071876893.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.811 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds