Wall clock time and date at job start Tue Mar 31 2020 05:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46908 * 110.99986 * 2 1 4 4 C 1.53001 * 109.47064 * 293.95714 * 3 2 1 5 5 H 1.08993 * 109.47604 * 54.99659 * 4 3 2 6 6 C 1.47204 * 109.46794 * 294.99586 * 4 3 2 7 7 N 3.66498 * 112.02703 * 284.54491 * 2 1 3 8 8 C 1.53003 * 109.46900 * 175.00065 * 4 3 2 9 9 C 1.50698 * 109.47190 * 184.99605 * 8 4 3 10 10 H 1.08008 * 119.99514 * 0.02562 * 9 8 4 11 11 C 1.37871 * 120.00081 * 179.97438 * 9 8 4 12 12 N 1.31509 * 120.00308 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 119.99929 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46768 * 180.02562 * 13 11 9 15 15 H 1.48499 * 109.46891 * 300.00550 * 13 11 9 16 16 H 1.48490 * 109.46832 * 60.00355 * 13 11 9 17 17 C 1.46901 * 111.00256 * 123.95604 * 2 1 3 18 18 C 1.52995 * 109.46982 * 82.01029 * 17 2 1 19 19 H 1.09000 * 110.33244 * 68.16457 * 18 17 2 20 20 C 1.54909 * 110.37279 * 190.41541 * 18 17 2 21 21 C 1.55260 * 101.59799 * 155.81886 * 20 18 17 22 22 C 1.54325 * 103.08598 * 324.49046 * 21 20 18 23 23 N 1.47439 * 107.23070 * 22.20291 * 22 21 20 24 24 C 1.39053 * 110.99523 * 123.26132 * 23 22 21 25 25 C 1.39472 * 120.15956 * 59.15587 * 24 23 22 26 26 C 1.38560 * 117.90443 * 180.02562 * 25 24 23 27 27 C 1.38815 * 118.03984 * 0.02562 * 26 25 24 28 28 N 1.31786 * 120.01486 * 0.02562 * 27 26 25 29 29 N 1.28354 * 122.28585 * 359.66030 * 28 27 26 30 30 H 1.09008 * 109.46989 * 67.59056 * 1 2 3 31 31 H 1.08998 * 109.46981 * 187.58908 * 1 2 3 32 32 H 1.09001 * 109.47259 * 307.58982 * 1 2 3 33 33 H 1.08998 * 109.46965 * 173.95573 * 3 2 1 34 34 H 1.09000 * 109.46365 * 53.95557 * 3 2 1 35 35 H 1.09004 * 109.47125 * 64.99405 * 8 4 3 36 36 H 1.08997 * 109.46510 * 304.99626 * 8 4 3 37 37 H 0.96992 * 120.00562 * 179.97438 * 12 11 9 38 38 H 1.08991 * 109.47249 * 202.01416 * 17 2 1 39 39 H 1.09004 * 109.46752 * 322.01624 * 17 2 1 40 40 H 1.09002 * 110.99045 * 273.99499 * 20 18 17 41 41 H 1.08998 * 110.99025 * 37.80862 * 20 18 17 42 42 H 1.09000 * 110.74266 * 206.05247 * 21 20 18 43 43 H 1.08999 * 110.60929 * 82.85851 * 21 20 18 44 44 H 1.09006 * 109.88436 * 262.80003 * 22 21 20 45 45 H 1.09000 * 110.02446 * 141.68745 * 22 21 20 46 46 H 1.08000 * 121.04995 * 359.97438 * 25 24 23 47 47 H 1.08007 * 120.98197 * 179.97438 * 26 25 24 48 48 H 1.08001 * 119.99513 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 1 0.5532 2.0059 -1.4691 6 6 2.3156 1.3778 -2.4303 7 7 2.8435 0.8532 -3.2886 8 6 2.0699 3.5225 -1.2688 9 6 1.6031 4.2290 -2.5154 10 1 1.0487 3.6872 -3.2676 11 6 1.8829 5.5670 -2.6953 12 7 2.5575 6.2267 -1.7793 13 14 1.3035 6.4428 -4.2404 14 1 1.7293 7.8646 -4.1924 15 1 1.8987 5.7882 -5.4330 16 1 -0.1773 6.3715 -4.3239 17 6 1.9955 -0.7660 1.1375 18 6 1.9911 -2.2569 0.7942 19 1 2.7222 -2.4680 0.0138 20 6 2.2912 -3.1021 2.0572 21 6 1.6382 -4.4609 1.6859 22 6 0.3914 -4.0406 0.8795 23 7 0.6420 -2.6822 0.3642 24 6 0.5258 -2.6455 -1.0210 25 6 -0.6727 -3.0108 -1.6336 26 6 -0.7367 -2.9574 -3.0167 27 6 0.3948 -2.5448 -3.7068 28 7 1.4875 -2.2185 -3.0462 29 7 1.5521 -2.2598 -1.7650 30 1 -0.3633 0.3918 -0.9501 31 1 -0.3633 -1.0186 0.1357 32 1 -0.3634 0.6269 0.8143 33 1 3.0797 1.3444 0.1082 34 1 1.5611 1.9273 0.8310 35 1 3.1570 3.5745 -1.2072 36 1 1.6329 4.0032 -0.3936 37 1 2.7546 7.1679 -1.9060 38 1 3.0151 -0.4453 1.3508 39 1 1.3695 -0.5930 2.0130 40 1 3.3653 -3.2113 2.2078 41 1 1.8170 -2.6697 2.9382 42 1 1.3503 -5.0088 2.5832 43 1 2.3131 -5.0553 1.0700 44 1 -0.4850 -4.0355 1.5278 45 1 0.2343 -4.7291 0.0493 46 1 -1.5240 -3.3260 -1.0484 47 1 -1.6401 -3.2297 -3.5424 48 1 0.3801 -2.4920 -4.7855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071876893.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:45 Heat of formation + Delta-G solvation = 95.118335 kcal Electronic energy + Delta-G solvation = -29188.403308 eV Core-core repulsion = 25471.967590 eV Total energy + Delta-G solvation = -3716.435718 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.21749 -40.14793 -38.89897 -36.86959 -35.43713 -34.43718 -33.85032 -33.49666 -31.12239 -30.44456 -28.76088 -27.57924 -25.71479 -25.36673 -24.58634 -23.55884 -22.54726 -21.83630 -21.16007 -18.67474 -18.53163 -18.17386 -17.90140 -17.37320 -17.11425 -16.71056 -16.04024 -15.90260 -15.51321 -15.36519 -15.07863 -14.68692 -14.58500 -14.33719 -14.14619 -14.01487 -13.96135 -13.63276 -13.51783 -13.23330 -13.04273 -12.97377 -12.65729 -12.53728 -12.48533 -12.40979 -12.27366 -12.12496 -11.98761 -11.85014 -11.70697 -11.45988 -11.35067 -11.14028 -10.99047 -10.92417 -10.57140 -10.31520 -9.35172 -8.95093 -8.21033 -6.29843 0.09342 0.21622 1.37719 1.40412 1.47619 2.19738 2.30614 2.39838 2.50155 2.84727 3.01642 3.13712 3.39235 3.43532 3.71019 3.76974 3.90683 4.00156 4.07114 4.12433 4.15821 4.26436 4.30708 4.37124 4.39134 4.56476 4.63312 4.67079 4.73593 4.76044 4.81534 4.83826 4.89387 4.91084 5.00169 5.00940 5.07936 5.12073 5.14733 5.30094 5.33348 5.42026 5.44538 5.58925 5.76261 5.81182 6.06024 6.14312 6.27947 6.34297 6.81033 7.06399 7.38230 8.06746 8.89960 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.016281 B = 0.003502 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.357973 B = 7993.146720 C = 9027.603925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.540 5.540 3 C 0.074 3.926 4 C 0.026 3.974 5 H 0.097 0.903 6 C 0.252 3.748 7 N -0.489 5.489 8 C 0.042 3.958 9 C -0.539 4.539 10 H 0.048 0.952 11 C 0.013 3.987 12 N -0.923 5.923 13 Si 0.950 3.050 14 H -0.278 1.278 15 H -0.281 1.281 16 H -0.263 1.263 17 C 0.075 3.925 18 C 0.077 3.923 19 H 0.063 0.937 20 C -0.119 4.119 21 C -0.133 4.133 22 C 0.043 3.957 23 N -0.455 5.455 24 C 0.247 3.753 25 C -0.138 4.138 26 C -0.095 4.095 27 C -0.007 4.007 28 N -0.259 5.259 29 N -0.276 5.276 30 H 0.032 0.968 31 H 0.109 0.891 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.062 0.938 35 H -0.001 1.001 36 H 0.031 0.969 37 H 0.265 0.735 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.060 0.940 44 H 0.110 0.890 45 H 0.061 0.939 46 H 0.176 0.824 47 H 0.184 0.816 48 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.069 -24.754 10.758 28.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.263 5.263 3 C -0.055 4.055 4 C 0.005 3.995 5 H 0.115 0.885 6 C -0.065 4.065 7 N -0.166 5.166 8 C 0.003 3.997 9 C -0.577 4.577 10 H 0.066 0.934 11 C -0.186 4.186 12 N -0.563 5.563 13 Si 0.775 3.225 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.187 1.187 17 C -0.053 4.053 18 C -0.030 4.030 19 H 0.081 0.919 20 C -0.157 4.157 21 C -0.171 4.171 22 C -0.083 4.083 23 N -0.175 5.175 24 C 0.009 3.991 25 C -0.170 4.170 26 C -0.124 4.124 27 C -0.174 4.174 28 N -0.099 5.099 29 N -0.121 5.121 30 H 0.051 0.949 31 H 0.127 0.873 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.018 0.982 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.079 0.921 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.193 0.807 47 H 0.202 0.798 48 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.822 -24.751 9.274 27.564 hybrid contribution -1.341 0.876 -0.525 1.686 sum -9.163 -23.875 8.749 27.028 Atomic orbital electron populations 1.22801 0.87239 1.04123 0.99081 1.61795 1.08287 1.12274 1.43992 1.22087 1.00289 0.88744 0.94354 1.19027 0.98593 0.94195 0.87732 0.88496 1.29156 0.92748 0.90971 0.93656 1.80973 1.11011 1.12120 1.12516 1.18950 0.95726 0.88128 0.96900 1.21454 1.35658 0.95274 1.05359 0.93361 1.25718 0.95179 0.98390 0.99348 1.70022 1.40541 1.09972 1.35724 0.85733 0.79363 0.77597 0.79812 1.20296 1.20720 1.18718 1.22064 1.00000 0.92084 0.91184 1.22681 0.88103 0.94926 0.97337 0.91860 1.22792 1.02009 0.94441 0.96495 1.22769 0.96031 0.97282 1.01054 1.23114 1.00555 0.85208 0.99386 1.60921 1.29019 1.23948 1.03602 1.21711 0.92076 0.93406 0.91950 1.22280 0.98048 1.00906 0.95725 1.22626 1.00082 0.95281 0.94382 1.24562 0.91632 0.97942 1.03309 1.72912 1.25572 1.09540 1.01868 1.73178 1.25945 1.13622 0.99370 0.94904 0.87342 0.95273 0.91115 0.92005 0.98229 0.95091 0.92602 0.90705 0.92638 0.89758 0.89034 0.87742 0.92091 0.87169 0.92049 0.80652 0.79847 0.80762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 8.00 127.69 1.02 1.44 16 2 N -0.54 -15.90 3.25 -922.43 -2.99 -18.90 16 3 C 0.07 2.48 4.28 86.30 0.37 2.85 16 4 C 0.03 1.10 2.13 -12.60 -0.03 1.07 16 5 H 0.10 3.94 6.50 -2.39 -0.02 3.92 16 6 C 0.25 11.83 13.67 89.44 1.22 13.05 16 7 N -0.49 -24.69 18.54 20.01 0.37 -24.32 16 8 C 0.04 2.10 4.42 29.85 0.13 2.23 16 9 C -0.54 -30.52 8.60 25.60 0.22 -30.30 16 10 H 0.05 2.74 7.59 -2.91 -0.02 2.71 16 11 C 0.01 0.72 5.46 84.65 0.46 1.19 16 12 N -0.92 -54.95 13.29 21.44 0.28 -54.66 16 13 Si 0.95 45.16 29.54 68.60 2.03 47.19 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 16 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 17 C 0.07 1.73 5.02 86.30 0.43 2.17 16 18 C 0.08 1.62 2.54 45.38 0.12 1.74 16 19 H 0.06 1.79 6.59 -2.39 -0.02 1.78 16 20 C -0.12 -1.57 6.51 32.02 0.21 -1.36 16 21 C -0.13 -1.40 6.94 31.82 0.22 -1.18 16 22 C 0.04 0.51 6.47 86.65 0.56 1.07 16 23 N -0.46 -8.54 2.95 -667.70 -1.97 -10.51 16 24 C 0.25 5.83 3.62 133.10 0.48 6.31 16 25 C -0.14 -2.45 9.00 22.64 0.20 -2.25 16 26 C -0.10 -1.67 10.20 22.48 0.23 -1.44 16 27 C -0.01 -0.18 11.31 84.84 0.96 0.78 16 28 N -0.26 -8.91 11.49 -57.20 -0.66 -9.56 16 29 N -0.28 -8.84 8.56 -55.10 -0.47 -9.31 16 30 H 0.03 1.02 6.74 -2.38 -0.02 1.00 16 31 H 0.11 2.60 4.18 -2.39 -0.01 2.59 16 32 H 0.03 0.73 8.03 -2.39 -0.02 0.71 16 33 H 0.07 2.42 7.79 -2.39 -0.02 2.41 16 34 H 0.06 1.88 8.04 -2.39 -0.02 1.86 16 35 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.07 1.73 7.62 -2.39 -0.02 1.71 16 39 H 0.06 1.11 7.77 -2.39 -0.02 1.10 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 1.00 7.96 -2.39 -0.02 0.98 16 42 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.06 0.75 7.14 -2.39 -0.02 0.73 16 46 H 0.18 1.85 8.02 -2.91 -0.02 1.82 16 47 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 48 H 0.18 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -75.56 384.36 4.36 -71.21 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.95 Total: 11.48 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 6.81 Total: -2.61 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -5.44 Total: -127.26 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -75.56 4.36 -71.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071876893.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.326 kcal (2) G-P(sol) polarization free energy of solvation -75.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds