Wall clock time and date at job start Tue Mar 31 2020 05:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42907 * 109.46943 * 2 1 4 4 C 1.35896 * 116.99949 * 184.79900 * 3 2 1 5 5 C 1.38757 * 120.05647 * 354.80985 * 4 3 2 6 6 C 1.38125 * 119.94264 * 180.02562 * 5 4 3 7 7 C 1.38294 * 120.05379 * 359.97438 * 6 5 4 8 8 C 1.38235 * 120.11209 * 0.02562 * 7 6 5 9 9 C 1.38165 * 120.05913 * 0.02562 * 8 7 6 10 10 C 1.50709 * 120.02714 * 179.97438 * 9 8 7 11 11 N 1.46493 * 109.46849 * 260.60163 * 10 9 8 12 12 C 1.36939 * 120.00420 * 264.12399 * 11 10 9 13 13 H 1.07999 * 120.00144 * 144.54532 * 12 11 10 14 14 C 1.38810 * 119.99995 * 324.55393 * 12 11 10 15 15 N 1.31616 * 120.00241 * 162.61613 * 14 12 11 16 16 Si 1.86804 * 120.00006 * 342.62090 * 14 12 11 17 17 H 1.48504 * 109.47459 * 95.29157 * 16 14 12 18 18 H 1.48502 * 109.47093 * 215.29392 * 16 14 12 19 19 H 1.48501 * 109.46985 * 335.29304 * 16 14 12 20 20 C 1.46501 * 120.00003 * 84.13161 * 11 10 9 21 21 C 1.53002 * 109.47100 * 94.43629 * 20 11 10 22 22 C 1.52999 * 109.46816 * 184.74288 * 21 20 11 23 23 N 1.46502 * 109.47166 * 184.71434 * 22 21 20 24 24 C 1.36884 * 126.40229 * 89.99404 * 23 22 21 25 25 C 1.34666 * 106.82035 * 180.02562 * 24 23 22 26 26 N 1.34127 * 108.02184 * 0.02562 * 25 24 23 27 27 C 1.30505 * 109.25301 * 359.72371 * 26 25 24 28 28 H 1.08995 * 109.47057 * 64.01193 * 1 2 3 29 29 H 1.09003 * 109.46749 * 184.00565 * 1 2 3 30 30 H 1.09002 * 109.47348 * 304.00761 * 1 2 3 31 31 H 1.08998 * 109.47752 * 239.99831 * 2 1 3 32 32 H 1.09001 * 109.47498 * 119.99307 * 2 1 3 33 33 H 1.07993 * 120.02793 * 359.97438 * 5 4 3 34 34 H 1.07992 * 119.97008 * 179.72619 * 6 5 4 35 35 H 1.07994 * 119.93736 * 179.97438 * 7 6 5 36 36 H 1.08008 * 119.97109 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.47153 * 20.60623 * 10 9 8 38 38 H 1.09000 * 109.46788 * 140.60442 * 10 9 8 39 39 H 0.97002 * 120.00428 * 179.97438 * 15 14 12 40 40 H 1.08996 * 109.47558 * 214.43853 * 20 11 10 41 41 H 1.08998 * 109.46985 * 334.44271 * 20 11 10 42 42 H 1.08994 * 109.47456 * 304.74350 * 21 20 11 43 43 H 1.08996 * 109.46897 * 64.74876 * 21 20 11 44 44 H 1.09003 * 109.47353 * 304.71094 * 22 21 20 45 45 H 1.08998 * 109.47484 * 64.71084 * 22 21 20 46 46 H 1.07995 * 126.58727 * 359.97438 * 24 23 22 47 47 H 1.07995 * 125.98995 * 180.02562 * 25 24 23 48 48 H 1.08001 * 125.64807 * 180.29332 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3495 1.5269 -0.1013 5 6 4.2000 0.4305 -0.0903 6 6 5.5649 0.6157 -0.1928 7 6 6.0840 1.8924 -0.3070 8 6 5.2388 2.9863 -0.3182 9 6 3.8728 2.8064 -0.2148 10 6 2.9521 3.9995 -0.2266 11 7 2.5675 4.3330 1.1471 12 6 1.3893 3.8617 1.6619 13 1 1.3281 3.5840 2.7038 14 6 0.2738 3.7408 0.8447 15 7 -0.7384 2.9879 1.2199 16 14 0.2094 4.6466 -0.7878 17 1 0.6572 3.7397 -1.8752 18 1 -1.1830 5.0887 -1.0539 19 1 1.1029 5.8314 -0.7321 20 6 3.4433 5.1709 1.9700 21 6 2.9976 6.6308 1.8658 22 6 3.9813 7.5200 2.6290 23 7 3.4950 8.9020 2.6247 24 6 2.6735 9.4769 3.5564 25 6 2.4780 10.7520 3.1697 26 7 3.1611 10.9501 2.0325 27 6 3.7772 9.8478 1.7030 28 1 -0.3633 0.4503 -0.9237 29 1 -0.3633 -1.0252 0.0718 30 1 -0.3634 0.5748 0.8519 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 3.7951 -0.5666 -0.0007 34 1 6.2275 -0.2370 -0.1799 35 1 7.1515 2.0351 -0.3867 36 1 5.6467 3.9824 -0.4071 37 1 3.4645 4.8495 -0.6770 38 1 2.0598 3.7641 -0.8067 39 1 -1.5181 2.9037 0.6490 40 1 3.3852 4.8465 3.0090 41 1 4.4705 5.0786 1.6175 42 1 2.9750 6.9299 0.8180 43 1 2.0018 6.7382 2.2959 44 1 4.0668 7.1682 3.6571 45 1 4.9584 7.4771 2.1479 46 1 2.2607 8.9995 4.4327 47 1 1.8766 11.4863 3.6849 48 1 4.4067 9.7137 0.8358 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071893009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:39 Heat of formation + Delta-G solvation = 79.776068 kcal Electronic energy + Delta-G solvation = -28686.006607 eV Core-core repulsion = 24936.612847 eV Total energy + Delta-G solvation = -3749.393760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.82460 -39.66653 -37.08285 -36.41890 -34.59615 -31.94388 -31.69423 -30.91665 -29.89045 -29.23506 -28.90139 -26.03038 -25.39822 -23.44623 -22.80584 -21.37466 -21.15432 -20.91260 -20.64130 -20.06683 -17.64533 -17.21731 -16.75973 -15.79844 -15.42968 -15.23831 -15.03447 -14.93800 -14.65631 -14.30551 -13.96454 -13.75882 -13.66209 -13.24266 -13.01006 -12.85504 -12.80706 -12.52887 -12.39859 -11.98578 -11.94448 -11.62500 -11.50166 -11.32111 -11.22792 -11.11642 -10.88449 -10.69138 -10.22152 -10.11655 -10.05429 -9.85529 -9.81877 -9.57151 -9.39295 -8.53304 -8.39709 -8.36551 -7.52929 -6.91919 -5.93333 -3.35023 1.76260 1.95826 2.24429 2.99443 3.32913 3.33441 3.47378 3.47767 3.94500 4.19801 4.55211 4.79411 4.84168 4.91441 5.07074 5.19341 5.23833 5.28957 5.38901 5.45493 5.48138 5.55452 5.57761 5.61023 5.71342 5.72252 5.79976 5.86134 5.87343 5.99410 6.04955 6.10342 6.17808 6.24121 6.38108 6.43857 6.47565 6.57235 6.62879 6.78844 6.84156 6.88549 6.89301 6.98953 7.09461 7.31473 7.35249 8.03681 8.18788 8.21985 8.37489 8.95011 9.75029 10.08488 11.21981 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.003888 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.540244 B = 7200.653831 C = 8624.338725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.062 3.938 3 O -0.265 6.265 4 C 0.157 3.843 5 C -0.222 4.222 6 C -0.094 4.094 7 C -0.172 4.172 8 C -0.084 4.084 9 C -0.122 4.122 10 C 0.176 3.824 11 N -0.592 5.592 12 C -0.257 4.257 13 H 0.077 0.923 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.873 3.127 17 H -0.286 1.286 18 H -0.307 1.307 19 H -0.274 1.274 20 C 0.159 3.841 21 C -0.154 4.154 22 C 0.103 3.897 23 N -0.451 5.451 24 C -0.051 4.051 25 C -0.040 4.040 26 N -0.503 5.503 27 C 0.176 3.824 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.259 0.741 40 H 0.051 0.949 41 H 0.043 0.957 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.172 0.828 47 H 0.165 0.835 48 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.673 -0.639 -0.034 10.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.013 4.013 3 O -0.176 6.176 4 C 0.110 3.890 5 C -0.241 4.241 6 C -0.112 4.112 7 C -0.190 4.190 8 C -0.103 4.103 9 C -0.125 4.125 10 C 0.051 3.949 11 N -0.312 5.312 12 C -0.386 4.386 13 H 0.094 0.906 14 C -0.142 4.142 15 N -0.536 5.536 16 Si 0.705 3.295 17 H -0.214 1.214 18 H -0.236 1.236 19 H -0.199 1.199 20 C 0.031 3.969 21 C -0.195 4.195 22 C -0.019 4.019 23 N -0.132 5.132 24 C -0.185 4.185 25 C -0.188 4.188 26 N -0.222 5.222 27 C -0.106 4.106 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.189 0.811 47 H 0.183 0.817 48 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 10.373 0.021 -0.465 10.384 hybrid contribution -0.076 -0.755 -0.568 0.948 sum 10.297 -0.734 -1.033 10.375 Atomic orbital electron populations 1.21806 0.92578 1.01352 1.05449 1.22626 0.96552 0.82859 0.99295 1.86557 1.17593 1.27252 1.86205 1.18955 0.83631 0.93223 0.93234 1.21190 0.94424 0.97961 1.10523 1.20729 0.94259 0.96829 0.99431 1.20834 0.98966 0.92760 1.06476 1.20775 0.92025 0.98343 0.99183 1.20235 0.94583 0.94567 1.03147 1.20144 0.95536 0.91128 0.88117 1.44073 1.21557 1.54737 1.10785 1.18639 0.85123 1.37847 0.96949 0.90561 1.25115 0.95106 0.97079 0.96883 1.69749 1.07709 1.38051 1.38097 0.87038 0.75594 0.81039 0.85784 1.21445 1.23568 1.19883 1.20740 0.92865 0.87340 0.95918 1.22688 0.99511 0.97301 1.00016 1.22089 0.98776 0.77829 1.03238 1.45741 1.36221 1.11490 1.19796 1.22761 1.01651 0.95730 0.98360 1.22233 1.04837 0.95589 0.96164 1.70241 1.12139 1.25485 1.14314 1.24896 1.04089 0.84447 0.97182 0.92783 0.92224 0.87938 0.93944 0.93090 0.86320 0.86934 0.86968 0.86451 0.93915 0.91393 0.93078 0.93088 0.93885 0.92073 0.90718 0.89210 0.89351 0.81104 0.81743 0.78373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 10.28 37.16 0.38 -2.36 16 2 C 0.06 1.10 5.47 37.16 0.20 1.30 16 3 O -0.26 -5.73 8.02 -19.41 -0.16 -5.88 16 4 C 0.16 3.11 6.65 -39.22 -0.26 2.85 16 5 C -0.22 -3.69 9.03 -39.43 -0.36 -4.05 16 6 C -0.09 -1.37 10.04 -39.60 -0.40 -1.77 16 7 C -0.17 -2.47 10.04 -39.56 -0.40 -2.86 16 8 C -0.08 -1.34 9.66 -39.61 -0.38 -1.72 16 9 C -0.12 -2.35 5.47 -104.47 -0.57 -2.92 16 10 C 0.18 3.70 3.94 -5.19 -0.02 3.68 16 11 N -0.59 -12.86 2.14 -174.61 -0.37 -13.24 16 12 C -0.26 -6.62 9.35 -15.06 -0.14 -6.76 16 13 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 14 C 0.06 1.57 4.71 -17.43 -0.08 1.48 16 15 N -0.89 -24.79 12.80 55.49 0.71 -24.08 16 16 Si 0.87 21.90 24.65 -169.99 -4.19 17.71 16 17 H -0.29 -7.17 6.74 56.52 0.38 -6.78 16 18 H -0.31 -7.98 7.11 56.52 0.40 -7.58 16 19 H -0.27 -6.72 6.99 56.52 0.40 -6.33 16 20 C 0.16 2.74 5.69 -4.04 -0.02 2.71 16 21 C -0.15 -2.44 5.84 -26.73 -0.16 -2.60 16 22 C 0.10 1.22 6.15 -4.04 -0.02 1.20 16 23 N -0.45 -6.08 2.75 -118.58 -0.33 -6.41 16 24 C -0.05 -0.68 11.58 -16.56 -0.19 -0.87 16 25 C -0.04 -0.57 11.87 -17.81 -0.21 -0.79 16 26 N -0.50 -8.05 11.25 -14.67 -0.17 -8.22 16 27 C 0.18 2.47 12.56 -90.37 -1.14 1.33 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.10 2.18 6.94 -51.93 -0.36 1.82 16 31 H 0.04 0.65 7.62 -51.93 -0.40 0.25 16 32 H 0.05 0.84 7.72 -51.93 -0.40 0.44 16 33 H 0.12 1.75 6.33 -52.49 -0.33 1.42 16 34 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.12 1.59 8.04 -52.48 -0.42 1.17 16 37 H 0.04 0.81 7.98 -51.93 -0.41 0.40 16 38 H 0.07 1.62 2.59 -51.93 -0.13 1.49 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 41 H 0.04 0.65 8.04 -51.93 -0.42 0.23 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.17 1.88 8.06 -52.49 -0.42 1.45 16 47 H 0.17 1.93 8.06 -52.49 -0.42 1.50 16 48 H 0.20 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -31.10 389.63 -9.93 -41.03 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.53 Total: 5.36 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -3.77 Total: -12.15 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.16 Total: -51.94 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.16 Total: -5.88 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.19 Total: 17.71 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.10 -9.93 -41.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071893009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.808 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds