Wall clock time and date at job start Tue Mar 31 2020 05:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42907 * 109.46943 * 2 1 4 4 C 1.35896 * 116.99949 * 184.79900 * 3 2 1 5 5 C 1.38757 * 120.05647 * 354.80985 * 4 3 2 6 6 C 1.38125 * 119.94264 * 180.02562 * 5 4 3 7 7 C 1.38294 * 120.05379 * 359.97438 * 6 5 4 8 8 C 1.38235 * 120.11209 * 0.02562 * 7 6 5 9 9 C 1.38165 * 120.05913 * 0.02562 * 8 7 6 10 10 C 1.50709 * 120.02714 * 179.97438 * 9 8 7 11 11 N 1.46493 * 109.46849 * 260.60163 * 10 9 8 12 12 C 1.36939 * 120.00420 * 264.12399 * 11 10 9 13 13 H 1.07999 * 120.00144 * 144.54532 * 12 11 10 14 14 C 1.38810 * 119.99995 * 324.55393 * 12 11 10 15 15 N 1.31616 * 120.00241 * 162.61613 * 14 12 11 16 16 Si 1.86804 * 120.00006 * 342.62090 * 14 12 11 17 17 H 1.48504 * 109.47459 * 95.29157 * 16 14 12 18 18 H 1.48502 * 109.47093 * 215.29392 * 16 14 12 19 19 H 1.48501 * 109.46985 * 335.29304 * 16 14 12 20 20 C 1.46501 * 120.00003 * 84.13161 * 11 10 9 21 21 C 1.53002 * 109.47100 * 94.43629 * 20 11 10 22 22 C 1.52999 * 109.46816 * 184.74288 * 21 20 11 23 23 N 1.46502 * 109.47166 * 184.71434 * 22 21 20 24 24 C 1.36884 * 126.40229 * 89.99404 * 23 22 21 25 25 C 1.34666 * 106.82035 * 180.02562 * 24 23 22 26 26 N 1.34127 * 108.02184 * 0.02562 * 25 24 23 27 27 C 1.30505 * 109.25301 * 359.72371 * 26 25 24 28 28 H 1.08995 * 109.47057 * 64.01193 * 1 2 3 29 29 H 1.09003 * 109.46749 * 184.00565 * 1 2 3 30 30 H 1.09002 * 109.47348 * 304.00761 * 1 2 3 31 31 H 1.08998 * 109.47752 * 239.99831 * 2 1 3 32 32 H 1.09001 * 109.47498 * 119.99307 * 2 1 3 33 33 H 1.07993 * 120.02793 * 359.97438 * 5 4 3 34 34 H 1.07992 * 119.97008 * 179.72619 * 6 5 4 35 35 H 1.07994 * 119.93736 * 179.97438 * 7 6 5 36 36 H 1.08008 * 119.97109 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.47153 * 20.60623 * 10 9 8 38 38 H 1.09000 * 109.46788 * 140.60442 * 10 9 8 39 39 H 0.97002 * 120.00428 * 179.97438 * 15 14 12 40 40 H 1.08996 * 109.47558 * 214.43853 * 20 11 10 41 41 H 1.08998 * 109.46985 * 334.44271 * 20 11 10 42 42 H 1.08994 * 109.47456 * 304.74350 * 21 20 11 43 43 H 1.08996 * 109.46897 * 64.74876 * 21 20 11 44 44 H 1.09003 * 109.47353 * 304.71094 * 22 21 20 45 45 H 1.08998 * 109.47484 * 64.71084 * 22 21 20 46 46 H 1.07995 * 126.58727 * 359.97438 * 24 23 22 47 47 H 1.07995 * 125.98995 * 180.02562 * 25 24 23 48 48 H 1.08001 * 125.64807 * 180.29332 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3495 1.5269 -0.1013 5 6 4.2000 0.4305 -0.0903 6 6 5.5649 0.6157 -0.1928 7 6 6.0840 1.8924 -0.3070 8 6 5.2388 2.9863 -0.3182 9 6 3.8728 2.8064 -0.2148 10 6 2.9521 3.9995 -0.2266 11 7 2.5675 4.3330 1.1471 12 6 1.3893 3.8617 1.6619 13 1 1.3281 3.5840 2.7038 14 6 0.2738 3.7408 0.8447 15 7 -0.7384 2.9879 1.2199 16 14 0.2094 4.6466 -0.7878 17 1 0.6572 3.7397 -1.8752 18 1 -1.1830 5.0887 -1.0539 19 1 1.1029 5.8314 -0.7321 20 6 3.4433 5.1709 1.9700 21 6 2.9976 6.6308 1.8658 22 6 3.9813 7.5200 2.6290 23 7 3.4950 8.9020 2.6247 24 6 2.6735 9.4769 3.5564 25 6 2.4780 10.7520 3.1697 26 7 3.1611 10.9501 2.0325 27 6 3.7772 9.8478 1.7030 28 1 -0.3633 0.4503 -0.9237 29 1 -0.3633 -1.0252 0.0718 30 1 -0.3634 0.5748 0.8519 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 3.7951 -0.5666 -0.0007 34 1 6.2275 -0.2370 -0.1799 35 1 7.1515 2.0351 -0.3867 36 1 5.6467 3.9824 -0.4071 37 1 3.4645 4.8495 -0.6770 38 1 2.0598 3.7641 -0.8067 39 1 -1.5181 2.9037 0.6490 40 1 3.3852 4.8465 3.0090 41 1 4.4705 5.0786 1.6175 42 1 2.9750 6.9299 0.8180 43 1 2.0018 6.7382 2.2959 44 1 4.0668 7.1682 3.6571 45 1 4.9584 7.4771 2.1479 46 1 2.2607 8.9995 4.4327 47 1 1.8766 11.4863 3.6849 48 1 4.4067 9.7137 0.8358 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071893009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:38 Heat of formation + Delta-G solvation = 64.219559 kcal Electronic energy + Delta-G solvation = -28686.681188 eV Core-core repulsion = 24936.612847 eV Total energy + Delta-G solvation = -3750.068340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.86143 -40.99942 -38.52218 -37.81918 -35.84192 -33.77014 -33.02486 -32.28157 -31.26592 -30.33747 -30.17422 -27.33039 -27.08114 -24.78086 -24.25590 -22.68865 -22.22711 -22.19062 -21.74562 -21.52181 -19.11010 -18.54804 -18.18455 -17.45081 -16.81848 -16.59733 -16.39189 -16.14755 -15.88097 -15.75862 -15.21657 -14.96019 -14.81838 -14.72015 -14.36799 -14.26154 -14.10470 -14.00288 -13.94032 -13.34748 -13.28088 -13.08846 -12.87028 -12.66669 -12.65897 -12.50652 -12.39677 -12.31969 -11.76225 -11.58182 -11.47580 -11.47162 -11.39949 -10.93196 -10.52314 -10.49859 -9.66888 -9.41251 -8.86968 -8.68285 -8.00381 -5.35845 0.52987 0.71544 1.20365 1.30492 1.39057 1.43673 2.00815 2.25588 2.50105 2.62664 2.91663 3.35000 3.51335 3.85058 3.90537 3.98933 4.00375 4.08129 4.12727 4.22906 4.26715 4.30902 4.40282 4.41796 4.44882 4.46325 4.60031 4.62636 4.69817 4.74331 4.75798 4.81491 4.84022 4.92006 5.01288 5.02920 5.16970 5.26131 5.45325 5.46498 5.50817 5.61507 5.67822 5.75730 5.86612 6.08757 6.12413 6.29790 6.35821 6.84498 7.10951 7.17060 7.79235 8.17654 9.18026 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.003888 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.540244 B = 7200.653831 C = 8624.338725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.305 6.305 4 C 0.121 3.879 5 C -0.228 4.228 6 C -0.088 4.088 7 C -0.163 4.163 8 C -0.080 4.080 9 C -0.151 4.151 10 C 0.177 3.823 11 N -0.604 5.604 12 C -0.234 4.234 13 H 0.039 0.961 14 C 0.023 3.977 15 N -0.926 5.926 16 Si 0.920 3.080 17 H -0.292 1.292 18 H -0.326 1.326 19 H -0.266 1.266 20 C 0.158 3.842 21 C -0.139 4.139 22 C 0.113 3.887 23 N -0.455 5.455 24 C -0.057 4.057 25 C -0.060 4.060 26 N -0.540 5.540 27 C 0.172 3.828 28 H 0.039 0.961 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.131 0.869 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.144 0.856 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.253 0.747 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.047 0.953 43 H 0.037 0.963 44 H 0.107 0.893 45 H 0.123 0.877 46 H 0.191 0.809 47 H 0.180 0.820 48 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.782 -1.021 -0.449 14.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.218 6.218 4 C 0.074 3.926 5 C -0.247 4.247 6 C -0.106 4.106 7 C -0.181 4.181 8 C -0.099 4.099 9 C -0.154 4.154 10 C 0.052 3.948 11 N -0.325 5.325 12 C -0.363 4.363 13 H 0.057 0.943 14 C -0.174 4.174 15 N -0.571 5.571 16 Si 0.753 3.247 17 H -0.221 1.221 18 H -0.256 1.256 19 H -0.190 1.190 20 C 0.032 3.968 21 C -0.180 4.180 22 C -0.009 4.009 23 N -0.137 5.137 24 C -0.191 4.191 25 C -0.207 4.207 26 N -0.259 5.259 27 C -0.111 4.111 28 H 0.058 0.942 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.149 0.851 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.125 0.875 45 H 0.141 0.859 46 H 0.208 0.792 47 H 0.197 0.803 48 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 14.533 -0.343 -0.878 14.564 hybrid contribution -1.215 -0.713 -0.414 1.469 sum 13.318 -1.056 -1.292 13.422 Atomic orbital electron populations 1.21743 0.93229 1.02700 1.02815 1.22754 0.96030 0.82101 1.00673 1.86493 1.19221 1.29081 1.87028 1.19365 0.83347 0.94642 0.95225 1.21420 0.95277 0.97708 1.10294 1.21204 0.93679 0.98465 0.97295 1.21288 1.00688 0.91960 1.04210 1.21082 0.90581 1.00395 0.97804 1.20225 0.95810 0.93567 1.05808 1.20027 0.94886 0.92862 0.86995 1.44161 1.20941 1.55939 1.11449 1.18359 0.86628 1.36168 0.95164 0.94314 1.25399 0.95306 0.98106 0.98605 1.69854 1.08292 1.39984 1.38922 0.86293 0.74162 0.80317 0.83879 1.22065 1.25644 1.19042 1.20859 0.93608 0.87266 0.95047 1.22411 0.98771 0.97326 0.99527 1.22074 0.98612 0.76215 1.03978 1.45852 1.36224 1.11898 1.19700 1.23156 1.01331 0.95674 0.98943 1.22630 1.05258 0.96622 0.96205 1.70221 1.13409 1.26941 1.15349 1.25496 1.03783 0.84062 0.97716 0.94200 0.88598 0.91865 0.91583 0.92348 0.85086 0.83457 0.83168 0.83811 0.91912 0.94752 0.93735 0.93555 0.90534 0.93372 0.94380 0.87511 0.85917 0.79207 0.80272 0.75610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.43 10.28 71.98 0.74 -4.69 16 2 C 0.06 2.12 5.47 71.98 0.39 2.51 16 3 O -0.31 -13.55 8.02 -92.38 -0.74 -14.29 16 4 C 0.12 4.70 6.65 22.51 0.15 4.85 16 5 C -0.23 -7.07 9.03 22.37 0.20 -6.87 16 6 C -0.09 -2.18 10.04 22.26 0.22 -1.96 16 7 C -0.16 -3.84 10.04 22.28 0.22 -3.61 16 8 C -0.08 -2.23 9.66 22.25 0.22 -2.01 16 9 C -0.15 -5.58 5.47 -19.77 -0.11 -5.69 16 10 C 0.18 7.32 3.94 85.64 0.34 7.66 16 11 N -0.60 -26.22 2.14 -706.35 -1.51 -27.73 16 12 C -0.23 -12.46 9.35 84.03 0.79 -11.67 16 13 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 14 C 0.02 1.30 4.71 84.86 0.40 1.70 16 15 N -0.93 -54.33 12.80 21.65 0.28 -54.06 16 16 Si 0.92 47.30 24.65 68.60 1.69 48.99 16 17 H -0.29 -15.05 6.74 99.48 0.67 -14.38 16 18 H -0.33 -17.49 7.11 99.48 0.71 -16.79 16 19 H -0.27 -13.03 6.99 99.48 0.70 -12.34 16 20 C 0.16 5.19 5.69 86.38 0.49 5.68 16 21 C -0.14 -4.21 5.84 30.59 0.18 -4.03 16 22 C 0.11 2.32 6.15 86.38 0.53 2.85 16 23 N -0.46 -11.29 2.75 -529.06 -1.46 -12.75 16 24 C -0.06 -1.45 11.58 83.09 0.96 -0.49 16 25 C -0.06 -1.67 11.87 83.52 0.99 -0.68 16 26 N -0.54 -16.75 11.25 -200.31 -2.25 -19.00 16 27 C 0.17 4.46 12.56 180.26 2.26 6.72 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.06 2.85 6.94 -2.39 -0.02 2.84 16 31 H 0.07 1.98 7.62 -2.39 -0.02 1.96 16 32 H 0.06 1.93 7.72 -2.39 -0.02 1.91 16 33 H 0.13 3.59 6.33 -2.91 -0.02 3.57 16 34 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.14 3.14 8.04 -2.91 -0.02 3.12 16 37 H 0.06 2.26 7.98 -2.39 -0.02 2.25 16 38 H 0.03 1.67 2.59 -2.39 -0.01 1.66 16 39 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 40 H 0.05 1.56 8.08 -2.39 -0.02 1.54 16 41 H 0.08 2.01 8.04 -2.39 -0.02 1.99 16 42 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.19 3.89 8.06 -2.91 -0.02 3.87 16 47 H 0.18 4.11 8.06 -2.91 -0.02 4.09 16 48 H 0.23 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -73.15 389.63 5.87 -67.28 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.89 Total: 21.29 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 8.98 Total: -9.74 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -4.95 Total: -113.53 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.74 Total: -14.29 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.69 Total: 48.99 kcal Total: -73.15 5.87 -67.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071893009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.496 kcal (2) G-P(sol) polarization free energy of solvation -73.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds