Wall clock time and date at job start Tue Mar 31 2020 05:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86791 * 119.99730 * 2 1 4 4 H 1.48497 * 109.47261 * 239.99773 * 3 2 1 5 5 H 1.48503 * 109.47694 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47043 * 120.00109 * 3 2 1 7 7 C 1.38814 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99984 * 168.77321 * 7 2 1 9 9 N 1.36940 * 119.99838 * 348.77952 * 7 2 1 10 10 C 1.47080 * 120.88058 * 150.32295 * 9 7 2 11 11 C 1.53233 * 108.68402 * 128.91025 * 10 9 7 12 12 N 1.46901 * 109.34086 * 53.73648 * 11 10 9 13 13 C 1.46897 * 111.00144 * 172.74821 * 12 11 10 14 14 H 1.09003 * 109.39626 * 307.45287 * 13 12 11 15 15 C 1.53069 * 109.40294 * 67.28264 * 13 12 11 16 16 C 1.53344 * 108.42313 * 169.02780 * 15 13 12 17 17 C 1.52925 * 108.67769 * 292.47116 * 16 15 13 18 18 N 1.45752 * 110.48406 * 50.75194 * 17 16 15 19 19 C 1.39929 * 117.94027 * 160.92819 * 18 17 16 20 20 C 1.38878 * 120.07205 * 68.47542 * 19 18 17 21 21 C 1.38114 * 119.92847 * 179.72059 * 20 19 18 22 22 C 1.38281 * 120.06926 * 0.52348 * 21 20 19 23 23 C 1.38279 * 120.14361 * 359.77284 * 22 21 20 24 24 C 1.38124 * 120.07092 * 359.95118 * 23 22 21 25 25 C 1.33350 * 124.10963 * 340.92382 * 18 17 16 26 26 O 1.21288 * 118.24471 * 182.22242 * 25 18 17 27 27 C 1.46900 * 111.26371 * 296.89484 * 12 11 10 28 28 C 1.47143 * 120.92477 * 330.07326 * 9 7 2 29 29 H 0.96994 * 119.99972 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.62951 * 9.10041 * 10 9 7 31 31 H 1.08999 * 109.62426 * 248.72217 * 10 9 7 32 32 H 1.09002 * 109.49324 * 173.68974 * 11 10 9 33 33 H 1.08996 * 109.49629 * 293.74850 * 11 10 9 34 34 H 1.08991 * 109.67253 * 288.76329 * 15 13 12 35 35 H 1.09003 * 109.67401 * 49.26103 * 15 13 12 36 36 H 1.09000 * 109.60694 * 52.22633 * 16 15 13 37 37 H 1.08998 * 109.60231 * 172.71482 * 16 15 13 38 38 H 1.09001 * 109.29876 * 171.06765 * 17 16 15 39 39 H 1.09002 * 109.29337 * 290.64565 * 17 16 15 40 40 H 1.07994 * 120.03111 * 359.97152 * 20 19 18 41 41 H 1.07999 * 119.96426 * 180.29671 * 21 20 19 42 42 H 1.08000 * 119.92903 * 179.74345 * 22 21 20 43 43 H 1.08003 * 119.96993 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.03617 * 179.97438 * 24 23 22 45 45 H 1.09005 * 109.49279 * 183.06543 * 27 12 11 46 46 H 1.09001 * 109.49663 * 303.11268 * 27 12 11 47 47 H 1.09005 * 109.46200 * 111.38412 * 28 9 7 48 48 H 1.08996 * 109.80729 * 350.99306 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0748 -1.2112 -0.1815 9 7 1.3452 -2.3766 0.2318 10 6 1.8140 -3.6388 -0.3601 11 6 1.9258 -4.6897 0.7495 12 7 0.6468 -4.7777 1.4668 13 6 0.6559 -5.8916 2.4244 14 1 0.9530 -6.8068 1.9123 15 6 1.6528 -5.5899 3.5461 16 6 1.4493 -6.6184 4.6650 17 6 0.0832 -6.3779 5.3088 18 7 -0.9556 -6.3052 4.2890 19 6 -2.2824 -6.4970 4.6899 20 6 -2.9116 -5.5512 5.4889 21 6 -4.2232 -5.7407 5.8780 22 6 -4.9064 -6.8758 5.4819 23 6 -4.2808 -7.8224 4.6914 24 6 -2.9711 -7.6361 4.2941 25 6 -0.7208 -6.0674 2.9981 26 8 -1.6699 -5.9891 2.2470 27 6 0.3232 -3.5107 2.1361 28 6 0.1458 -2.4114 1.0834 29 1 -0.4850 0.8400 -0.0004 30 1 2.7904 -3.4871 -0.8204 31 1 1.1025 -3.9762 -1.1138 32 1 2.1637 -5.6585 0.3102 33 1 2.7142 -4.4021 1.4448 34 1 2.6702 -5.6620 3.1619 35 1 1.4771 -4.5862 3.9331 36 1 1.4847 -7.6248 4.2477 37 1 2.2322 -6.5031 5.4146 38 1 -0.1411 -7.1953 5.9941 39 1 0.1064 -5.4394 5.8628 40 1 -2.3771 -4.6667 5.8022 41 1 -4.7145 -5.0033 6.4954 42 1 -5.9306 -7.0236 5.7909 43 1 -4.8169 -8.7081 4.3840 44 1 -2.4829 -8.3759 3.6771 45 1 -0.6011 -3.6244 2.7027 46 1 1.1334 -3.2394 2.8129 47 1 -0.7287 -2.6293 0.4703 48 1 0.0157 -1.4486 1.5776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072517305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:15 Heat of formation + Delta-G solvation = 44.333696 kcal Electronic energy + Delta-G solvation = -29225.053145 eV Core-core repulsion = 25474.122489 eV Total energy + Delta-G solvation = -3750.930656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -41.17985 -39.02883 -37.64773 -36.40543 -34.86920 -32.91822 -31.17185 -31.04935 -29.93957 -29.38454 -28.74208 -26.14429 -24.50312 -23.29386 -22.82493 -22.55816 -22.16340 -21.62401 -19.26227 -18.47893 -17.61447 -16.75441 -16.38550 -16.28880 -15.94018 -15.28228 -14.94898 -14.64433 -14.56167 -14.13319 -13.96227 -13.75927 -13.60630 -13.52006 -13.37006 -13.24118 -12.88326 -12.72420 -12.45843 -11.97425 -11.75811 -11.51657 -11.42689 -11.40881 -11.30158 -11.14408 -10.96216 -10.73848 -10.47685 -10.20447 -10.04513 -9.77962 -9.60185 -9.46404 -9.30364 -9.04141 -8.50705 -8.47260 -7.76754 -6.57116 -5.73132 -3.19714 1.16252 1.29050 2.70718 2.86173 3.39775 3.45034 3.46010 3.63014 4.26405 4.51546 4.53160 4.59705 4.66354 4.80477 4.84403 4.88957 4.98181 5.14635 5.23711 5.26371 5.31482 5.44433 5.46377 5.47487 5.54380 5.56552 5.67263 5.76522 5.88009 5.90551 5.94302 5.99943 6.16699 6.19939 6.23777 6.36942 6.38408 6.39321 6.49013 6.57050 6.74469 6.95896 6.98794 7.27799 7.31056 7.58104 7.69462 7.77259 7.83998 8.33076 8.49719 9.26014 9.87932 10.48658 11.35341 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.016151 B = 0.003319 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.193995 B = 8434.398483 C = 9196.369032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.046 3.954 12 N -0.508 5.508 13 C 0.078 3.922 14 H 0.106 0.894 15 C -0.163 4.163 16 C -0.129 4.129 17 C 0.116 3.884 18 N -0.572 5.572 19 C 0.144 3.856 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.123 4.123 23 C -0.111 4.111 24 C -0.105 4.105 25 C 0.524 3.476 26 O -0.506 6.506 27 C 0.036 3.964 28 C 0.182 3.818 29 H 0.255 0.745 30 H 0.056 0.944 31 H 0.027 0.973 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.055 0.945 46 H 0.029 0.971 47 H 0.028 0.972 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.826 -17.205 15.107 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.083 4.083 12 N -0.232 5.232 13 C -0.034 4.034 14 H 0.124 0.876 15 C -0.202 4.202 16 C -0.167 4.167 17 C -0.006 4.006 18 N -0.304 5.304 19 C 0.054 3.946 20 C -0.138 4.138 21 C -0.129 4.129 22 C -0.142 4.142 23 C -0.130 4.130 24 C -0.125 4.125 25 C 0.312 3.688 26 O -0.378 6.378 27 C -0.093 4.093 28 C 0.056 3.944 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.046 0.954 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.759 -17.053 14.256 22.398 hybrid contribution 1.087 1.032 0.678 1.645 sum -1.672 -16.021 14.934 21.965 Atomic orbital electron populations 1.69981 1.05195 1.25532 1.54079 1.25150 0.95392 0.98321 1.00665 0.86344 0.78787 0.83383 0.78025 1.20889 1.21603 1.21114 1.19126 0.90875 0.84004 1.44340 0.91833 1.44069 1.30899 1.02900 1.53944 1.20972 0.97846 0.86400 0.92567 1.22665 0.88635 0.99752 0.97255 1.61979 1.32387 1.03122 1.25701 1.21636 0.90418 0.98340 0.92997 0.87616 1.22463 1.00873 1.00468 0.96402 1.21822 0.95890 1.00113 0.98881 1.21462 0.86959 1.02091 0.90060 1.45117 1.04983 1.72196 1.08085 1.17609 0.85074 0.94146 0.97756 1.21246 0.95193 0.98081 0.99311 1.21019 0.93991 0.97739 1.00186 1.21164 0.99898 0.94532 0.98563 1.21019 0.94360 0.99553 0.98077 1.21205 0.95168 0.96548 0.99557 1.20201 0.91997 0.75980 0.80658 1.90759 1.43441 1.47032 1.56534 1.22954 0.98141 0.90291 0.97931 1.20826 0.88683 0.94968 0.89898 0.93534 0.92517 0.95549 0.91891 0.95006 0.90329 0.90218 0.90918 0.89631 0.90625 0.91605 0.85855 0.85701 0.85957 0.85803 0.86180 0.92637 0.95320 0.95428 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 11.05 55.49 0.61 -26.32 16 2 C 0.00 0.10 5.06 -17.43 -0.09 0.01 16 3 Si 0.90 21.93 29.57 -169.99 -5.03 16.90 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.25 -7.08 9.63 -15.06 -0.14 -7.23 16 8 H 0.06 1.72 7.85 -52.49 -0.41 1.31 16 9 N -0.59 -15.49 3.04 -171.96 -0.52 -16.02 16 10 C 0.15 3.25 6.68 -3.61 -0.02 3.23 16 11 C 0.05 0.83 5.21 -3.70 -0.02 0.81 16 12 N -0.51 -9.59 4.35 -228.00 -0.99 -10.58 16 13 C 0.08 1.17 2.41 -69.08 -0.17 1.00 16 14 H 0.11 1.44 8.02 -51.93 -0.42 1.02 16 15 C -0.16 -1.92 4.62 -26.52 -0.12 -2.04 16 16 C -0.13 -1.09 6.02 -26.59 -0.16 -1.25 16 17 C 0.12 1.09 6.23 -4.48 -0.03 1.06 16 18 N -0.57 -7.50 2.87 -114.64 -0.33 -7.83 16 19 C 0.14 1.92 4.43 -83.69 -0.37 1.55 16 20 C -0.12 -1.44 9.82 -39.39 -0.39 -1.83 16 21 C -0.11 -1.16 10.04 -39.61 -0.40 -1.56 16 22 C -0.12 -1.22 10.04 -39.55 -0.40 -1.62 16 23 C -0.11 -1.18 10.04 -39.61 -0.40 -1.58 16 24 C -0.11 -1.32 9.31 -39.39 -0.37 -1.68 16 25 C 0.52 8.55 5.61 -11.87 -0.07 8.49 16 26 O -0.51 -10.53 15.97 5.55 0.09 -10.44 16 27 C 0.04 0.74 4.78 -3.70 -0.02 0.73 16 28 C 0.18 4.67 5.36 -3.57 -0.02 4.65 16 29 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.06 1.17 7.95 -51.93 -0.41 0.75 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.96 8.02 -51.93 -0.42 0.54 16 33 H 0.03 0.56 7.13 -51.93 -0.37 0.19 16 34 H 0.08 0.88 7.33 -51.93 -0.38 0.50 16 35 H 0.08 1.08 5.96 -51.93 -0.31 0.77 16 36 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 44 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.06 1.17 6.93 -51.93 -0.36 0.81 16 46 H 0.03 0.58 6.45 -51.93 -0.33 0.25 16 47 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.09 2.46 6.20 -51.93 -0.32 2.14 16 LS Contribution 372.68 15.07 5.62 5.62 Total: -1.00 -34.00 372.68 -11.24 -45.25 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.52 Total: 0.69 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -3.17 Total: 2.73 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -1.23 Total: -60.75 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.00 -11.24 -45.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072517305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.581 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds