Wall clock time and date at job start Tue Mar 31 2020 05:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99780 * 2 1 4 4 H 1.48509 * 109.47226 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47250 * 299.99988 * 3 2 1 6 6 H 1.48497 * 109.47221 * 60.00469 * 3 2 1 7 7 C 1.38812 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99754 * 193.93676 * 7 2 1 9 9 N 1.36928 * 120.00187 * 13.93498 * 7 2 1 10 10 C 1.47079 * 120.88380 * 209.14886 * 9 7 2 11 11 C 1.53237 * 108.52689 * 231.16486 * 10 9 7 12 12 N 1.46904 * 109.33772 * 306.17151 * 11 10 9 13 13 C 1.46899 * 110.99771 * 187.24847 * 12 11 10 14 14 H 1.09009 * 109.39832 * 51.79676 * 13 12 11 15 15 C 1.53067 * 109.40775 * 291.96492 * 13 12 11 16 16 C 1.53280 * 108.46273 * 190.89784 * 15 13 12 17 17 C 1.52927 * 108.60881 * 67.62497 * 16 15 13 18 18 N 1.45752 * 110.48891 * 309.22983 * 17 16 15 19 19 C 1.39924 * 117.95152 * 199.07569 * 18 17 16 20 20 C 1.38873 * 120.06805 * 291.74110 * 19 18 17 21 21 C 1.38111 * 119.92702 * 179.78579 * 20 19 18 22 22 C 1.38288 * 120.07222 * 0.48522 * 21 20 19 23 23 C 1.38280 * 120.13685 * 359.74445 * 22 21 20 24 24 C 1.38111 * 120.07581 * 0.02562 * 23 22 21 25 25 C 1.33357 * 124.10561 * 19.09563 * 18 17 16 26 26 O 1.21290 * 118.24789 * 177.75463 * 25 18 17 27 27 C 1.46900 * 111.26718 * 63.10358 * 12 11 10 28 28 C 1.47082 * 120.88070 * 29.13217 * 9 7 2 29 29 H 0.96999 * 120.00597 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.62743 * 111.45509 * 10 9 7 31 31 H 1.08996 * 109.78859 * 350.97288 * 10 9 7 32 32 H 1.08994 * 109.49660 * 186.21317 * 11 10 9 33 33 H 1.09000 * 109.51613 * 66.14069 * 11 10 9 34 34 H 1.09007 * 109.67076 * 310.70710 * 15 13 12 35 35 H 1.09003 * 109.67067 * 71.23249 * 15 13 12 36 36 H 1.09001 * 109.64916 * 307.88082 * 16 15 13 37 37 H 1.09000 * 109.75543 * 187.42956 * 16 15 13 38 38 H 1.09000 * 109.30042 * 188.92105 * 17 16 15 39 39 H 1.08996 * 109.13277 * 69.43921 * 17 16 15 40 40 H 1.08002 * 120.03636 * 0.02562 * 20 19 18 41 41 H 1.07997 * 119.96732 * 180.22946 * 21 20 19 42 42 H 1.07998 * 119.92713 * 179.76294 * 22 21 20 43 43 H 1.08005 * 119.96402 * 179.97438 * 23 22 21 44 44 H 1.07996 * 120.03997 * 179.97438 * 24 23 22 45 45 H 1.08997 * 109.49332 * 56.85757 * 27 12 11 46 46 H 1.08999 * 109.48738 * 176.93286 * 27 12 11 47 47 H 1.09001 * 109.62968 * 248.54360 * 28 9 7 48 48 H 1.08999 * 109.62999 * 9.12809 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0665 -1.2159 0.2247 9 7 1.3559 -2.3704 -0.2866 10 6 1.8076 -3.6482 0.2848 11 6 1.9589 -4.6638 -0.8526 12 7 0.7042 -4.7327 -1.6135 13 6 0.7482 -5.8162 -2.6044 14 1 1.0449 -6.7435 -2.1140 15 6 1.7663 -5.4686 -3.6932 16 6 1.6025 -6.4646 -4.8468 17 6 0.2492 -6.2188 -5.5152 18 7 -0.8141 -6.1891 -4.5188 19 6 -2.1289 -6.3826 -4.9567 20 6 -2.7484 -5.4214 -5.7446 21 6 -4.0447 -5.6174 -6.1789 22 6 -4.7292 -6.7646 -5.8216 23 6 -4.1168 -7.7214 -5.0332 24 6 -2.8190 -7.5336 -4.5996 25 6 -0.6125 -5.9887 -3.2159 26 8 -1.5799 -5.9435 -2.4856 27 6 0.3978 -3.4463 -2.2533 28 6 0.1824 -2.3808 -1.1733 29 1 -0.4851 0.8400 0.0004 30 1 1.0707 -4.0092 1.0024 31 1 2.7671 -3.5109 0.7832 32 1 2.1860 -5.6451 -0.4362 33 1 2.7682 -4.3528 -1.5132 34 1 1.5867 -4.4557 -4.0536 35 1 2.7758 -5.5410 -3.2883 36 1 1.6396 -7.4830 -4.4598 37 1 2.4012 -6.3205 -5.5743 38 1 0.0504 -7.0170 -6.2305 39 1 0.2781 -5.2639 -6.0399 40 1 -2.2158 -4.5233 -6.0207 41 1 -4.5259 -4.8720 -6.7948 42 1 -5.7442 -6.9137 -6.1594 43 1 -4.6541 -8.6162 -4.7555 44 1 -2.3414 -8.2810 -3.9835 45 1 1.2287 -3.1518 -2.8943 46 1 -0.5072 -3.5448 -2.8528 47 1 -0.7107 -2.6200 -0.5959 48 1 0.0684 -1.4030 -1.6412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072517308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:24 Heat of formation + Delta-G solvation = 44.381411 kcal Electronic energy + Delta-G solvation = -29225.975521 eV Core-core repulsion = 25475.046934 eV Total energy + Delta-G solvation = -3750.928587 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.18322 -39.03192 -37.65764 -36.41016 -34.87819 -32.92399 -31.17838 -31.05081 -29.95083 -29.38678 -28.74703 -26.14714 -24.50416 -23.29457 -22.83086 -22.56926 -22.16271 -21.62653 -19.26795 -18.48765 -17.61767 -16.75664 -16.38957 -16.29157 -15.94263 -15.28635 -14.95072 -14.64786 -14.56198 -14.13563 -13.96189 -13.75868 -13.60623 -13.52126 -13.38047 -13.25155 -12.89757 -12.72731 -12.46209 -11.97707 -11.75718 -11.52551 -11.42330 -11.40758 -11.30325 -11.15852 -10.99556 -10.75957 -10.43632 -10.21338 -10.05097 -9.77895 -9.58846 -9.46937 -9.31176 -9.04151 -8.50178 -8.48253 -7.77198 -6.59214 -5.74074 -3.19089 1.16105 1.29061 2.70371 2.85967 3.38195 3.45552 3.47774 3.62990 4.25979 4.51351 4.52898 4.59314 4.66133 4.80371 4.84416 4.88865 4.98168 5.14582 5.23603 5.25983 5.31460 5.43380 5.45842 5.47087 5.54238 5.56346 5.66963 5.76308 5.87894 5.90371 5.93879 5.99653 6.16370 6.19781 6.23172 6.36526 6.38246 6.38955 6.48925 6.56383 6.73542 6.95745 6.98175 7.26384 7.30633 7.57623 7.68662 7.74936 7.83898 8.32772 8.48319 9.24954 9.87532 10.47936 11.34490 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.016121 B = 0.003321 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.469063 B = 8428.808532 C = 9169.893379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.046 3.954 12 N -0.508 5.508 13 C 0.078 3.922 14 H 0.106 0.894 15 C -0.163 4.163 16 C -0.129 4.129 17 C 0.116 3.884 18 N -0.571 5.571 19 C 0.144 3.856 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.123 4.123 23 C -0.112 4.112 24 C -0.105 4.105 25 C 0.524 3.476 26 O -0.506 6.506 27 C 0.036 3.964 28 C 0.183 3.817 29 H 0.253 0.747 30 H 0.027 0.973 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.029 0.971 46 H 0.055 0.945 47 H 0.028 0.972 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.310 -16.830 -15.704 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.083 4.083 12 N -0.232 5.232 13 C -0.034 4.034 14 H 0.124 0.876 15 C -0.202 4.202 16 C -0.167 4.167 17 C -0.006 4.006 18 N -0.303 5.303 19 C 0.054 3.946 20 C -0.138 4.138 21 C -0.130 4.130 22 C -0.141 4.141 23 C -0.130 4.130 24 C -0.124 4.124 25 C 0.311 3.689 26 O -0.378 6.378 27 C -0.093 4.093 28 C 0.056 3.944 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.047 0.953 46 H 0.073 0.927 47 H 0.046 0.954 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.249 -16.719 -14.879 22.494 hybrid contribution 1.073 1.070 -0.649 1.648 sum -1.177 -15.649 -15.528 22.077 Atomic orbital electron populations 1.70022 1.05212 1.25331 1.54062 1.25120 0.95335 0.98367 1.00796 0.86223 0.79236 0.84032 0.77268 1.20309 1.21638 1.21669 1.19208 0.91556 0.84304 1.43166 0.91701 1.44098 1.33318 1.02256 1.52129 1.20974 0.97928 0.86421 0.92486 1.22668 0.88981 0.99733 0.96913 1.61970 1.34076 1.03858 1.23290 1.21633 0.90426 0.98580 0.92738 0.87602 1.22453 1.00805 1.00638 0.96313 1.21813 0.96059 1.00290 0.98558 1.21455 0.86464 1.02143 0.90518 1.45113 1.05151 1.72660 1.07418 1.17612 0.85364 0.93998 0.97651 1.21244 0.95334 0.97990 0.99260 1.21019 0.94114 0.97708 1.00132 1.21166 0.99874 0.94423 0.98685 1.21017 0.94497 0.99530 0.97981 1.21199 0.95224 0.96532 0.99469 1.20212 0.92009 0.75965 0.80671 1.90759 1.41657 1.46940 1.58402 1.22946 0.98207 0.89852 0.98286 1.20804 0.89063 0.95397 0.89086 0.93649 0.95546 0.92474 0.91898 0.94992 0.90190 0.90343 0.90937 0.89627 0.90623 0.91602 0.85857 0.85709 0.85957 0.85802 0.86176 0.95257 0.92655 0.95371 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 11.15 55.49 0.62 -26.27 16 2 C 0.00 0.07 4.99 -17.43 -0.09 -0.02 16 3 Si 0.90 21.90 29.58 -169.99 -5.03 16.87 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.25 -7.04 9.62 -15.06 -0.14 -7.19 16 8 H 0.07 1.76 7.87 -52.48 -0.41 1.35 16 9 N -0.59 -15.45 3.03 -172.01 -0.52 -15.97 16 10 C 0.15 3.24 6.69 -3.60 -0.02 3.22 16 11 C 0.05 0.83 5.23 -3.70 -0.02 0.81 16 12 N -0.51 -9.56 4.35 -227.99 -0.99 -10.55 16 13 C 0.08 1.17 2.41 -69.08 -0.17 1.00 16 14 H 0.11 1.44 8.00 -51.92 -0.42 1.02 16 15 C -0.16 -1.92 4.61 -26.55 -0.12 -2.04 16 16 C -0.13 -1.09 6.02 -26.62 -0.16 -1.25 16 17 C 0.12 1.08 6.22 -4.48 -0.03 1.06 16 18 N -0.57 -7.48 2.88 -114.64 -0.33 -7.81 16 19 C 0.14 1.91 4.46 -83.69 -0.37 1.54 16 20 C -0.12 -1.44 9.82 -39.39 -0.39 -1.83 16 21 C -0.11 -1.16 10.04 -39.61 -0.40 -1.56 16 22 C -0.12 -1.22 10.04 -39.55 -0.40 -1.61 16 23 C -0.11 -1.18 10.04 -39.61 -0.40 -1.58 16 24 C -0.10 -1.31 9.27 -39.39 -0.37 -1.68 16 25 C 0.52 8.53 5.63 -11.87 -0.07 8.46 16 26 O -0.51 -10.50 15.97 5.55 0.09 -10.42 16 27 C 0.04 0.75 4.75 -3.70 -0.02 0.73 16 28 C 0.18 4.66 5.38 -3.60 -0.02 4.64 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 32 H 0.06 0.96 8.01 -51.93 -0.42 0.54 16 33 H 0.03 0.56 7.15 -51.93 -0.37 0.19 16 34 H 0.08 1.08 5.94 -51.93 -0.31 0.77 16 35 H 0.08 0.88 7.35 -51.93 -0.38 0.50 16 36 H 0.07 0.57 8.12 -51.93 -0.42 0.14 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 44 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.03 0.59 6.44 -51.93 -0.33 0.26 16 46 H 0.06 1.16 6.98 -51.93 -0.36 0.80 16 47 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.09 2.40 6.22 -51.93 -0.32 2.08 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -34.03 372.79 -11.24 -45.27 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.52 Total: 0.56 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -3.17 Total: 2.71 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -1.22 Total: -60.62 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.03 -11.24 -45.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072517308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.654 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds