Wall clock time and date at job start Tue Mar 31 2020 05:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99780 * 2 1 4 4 H 1.48509 * 109.47226 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47250 * 299.99988 * 3 2 1 6 6 H 1.48497 * 109.47221 * 60.00469 * 3 2 1 7 7 C 1.38812 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99754 * 193.93676 * 7 2 1 9 9 N 1.36928 * 120.00187 * 13.93498 * 7 2 1 10 10 C 1.47079 * 120.88380 * 209.14886 * 9 7 2 11 11 C 1.53237 * 108.52689 * 231.16486 * 10 9 7 12 12 N 1.46904 * 109.33772 * 306.17151 * 11 10 9 13 13 C 1.46899 * 110.99771 * 187.24847 * 12 11 10 14 14 H 1.09009 * 109.39832 * 51.79676 * 13 12 11 15 15 C 1.53067 * 109.40775 * 291.96492 * 13 12 11 16 16 C 1.53280 * 108.46273 * 190.89784 * 15 13 12 17 17 C 1.52927 * 108.60881 * 67.62497 * 16 15 13 18 18 N 1.45752 * 110.48891 * 309.22983 * 17 16 15 19 19 C 1.39924 * 117.95152 * 199.07569 * 18 17 16 20 20 C 1.38873 * 120.06805 * 291.74110 * 19 18 17 21 21 C 1.38111 * 119.92702 * 179.78579 * 20 19 18 22 22 C 1.38288 * 120.07222 * 0.48522 * 21 20 19 23 23 C 1.38280 * 120.13685 * 359.74445 * 22 21 20 24 24 C 1.38111 * 120.07581 * 0.02562 * 23 22 21 25 25 C 1.33357 * 124.10561 * 19.09563 * 18 17 16 26 26 O 1.21290 * 118.24789 * 177.75463 * 25 18 17 27 27 C 1.46900 * 111.26718 * 63.10358 * 12 11 10 28 28 C 1.47082 * 120.88070 * 29.13217 * 9 7 2 29 29 H 0.96999 * 120.00597 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.62743 * 111.45509 * 10 9 7 31 31 H 1.08996 * 109.78859 * 350.97288 * 10 9 7 32 32 H 1.08994 * 109.49660 * 186.21317 * 11 10 9 33 33 H 1.09000 * 109.51613 * 66.14069 * 11 10 9 34 34 H 1.09007 * 109.67076 * 310.70710 * 15 13 12 35 35 H 1.09003 * 109.67067 * 71.23249 * 15 13 12 36 36 H 1.09001 * 109.64916 * 307.88082 * 16 15 13 37 37 H 1.09000 * 109.75543 * 187.42956 * 16 15 13 38 38 H 1.09000 * 109.30042 * 188.92105 * 17 16 15 39 39 H 1.08996 * 109.13277 * 69.43921 * 17 16 15 40 40 H 1.08002 * 120.03636 * 0.02562 * 20 19 18 41 41 H 1.07997 * 119.96732 * 180.22946 * 21 20 19 42 42 H 1.07998 * 119.92713 * 179.76294 * 22 21 20 43 43 H 1.08005 * 119.96402 * 179.97438 * 23 22 21 44 44 H 1.07996 * 120.03997 * 179.97438 * 24 23 22 45 45 H 1.08997 * 109.49332 * 56.85757 * 27 12 11 46 46 H 1.08999 * 109.48738 * 176.93286 * 27 12 11 47 47 H 1.09001 * 109.62968 * 248.54360 * 28 9 7 48 48 H 1.08999 * 109.62999 * 9.12809 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0665 -1.2159 0.2247 9 7 1.3559 -2.3704 -0.2866 10 6 1.8076 -3.6482 0.2848 11 6 1.9589 -4.6638 -0.8526 12 7 0.7042 -4.7327 -1.6135 13 6 0.7482 -5.8162 -2.6044 14 1 1.0449 -6.7435 -2.1140 15 6 1.7663 -5.4686 -3.6932 16 6 1.6025 -6.4646 -4.8468 17 6 0.2492 -6.2188 -5.5152 18 7 -0.8141 -6.1891 -4.5188 19 6 -2.1289 -6.3826 -4.9567 20 6 -2.7484 -5.4214 -5.7446 21 6 -4.0447 -5.6174 -6.1789 22 6 -4.7292 -6.7646 -5.8216 23 6 -4.1168 -7.7214 -5.0332 24 6 -2.8190 -7.5336 -4.5996 25 6 -0.6125 -5.9887 -3.2159 26 8 -1.5799 -5.9435 -2.4856 27 6 0.3978 -3.4463 -2.2533 28 6 0.1824 -2.3808 -1.1733 29 1 -0.4851 0.8400 0.0004 30 1 1.0707 -4.0092 1.0024 31 1 2.7671 -3.5109 0.7832 32 1 2.1860 -5.6451 -0.4362 33 1 2.7682 -4.3528 -1.5132 34 1 1.5867 -4.4557 -4.0536 35 1 2.7758 -5.5410 -3.2883 36 1 1.6396 -7.4830 -4.4598 37 1 2.4012 -6.3205 -5.5743 38 1 0.0504 -7.0170 -6.2305 39 1 0.2781 -5.2639 -6.0399 40 1 -2.2158 -4.5233 -6.0207 41 1 -4.5259 -4.8720 -6.7948 42 1 -5.7442 -6.9137 -6.1594 43 1 -4.6541 -8.6162 -4.7555 44 1 -2.3414 -8.2810 -3.9835 45 1 1.2287 -3.1518 -2.8943 46 1 -0.5072 -3.5448 -2.8528 47 1 -0.7107 -2.6200 -0.5959 48 1 0.0684 -1.4030 -1.6412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072517308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:21 Heat of formation + Delta-G solvation = 22.766364 kcal Electronic energy + Delta-G solvation = -29226.912820 eV Core-core repulsion = 25475.046934 eV Total energy + Delta-G solvation = -3751.865886 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -42.28148 -40.16345 -39.03400 -37.53678 -36.47030 -34.29270 -32.91241 -31.90312 -31.72493 -30.32267 -30.08806 -27.75376 -25.83913 -24.66373 -24.33005 -23.86199 -23.19892 -22.70636 -20.81667 -19.72615 -18.67287 -18.55363 -17.53554 -17.38776 -17.16401 -16.73567 -16.19021 -16.06227 -15.72917 -15.48873 -15.25320 -15.14729 -15.07150 -14.83886 -14.55473 -14.37263 -14.28292 -14.10312 -13.59477 -13.26384 -13.10557 -12.87825 -12.75988 -12.67399 -12.49041 -12.35584 -12.24845 -12.21840 -12.07090 -12.01624 -11.77230 -11.66844 -11.43531 -10.73249 -10.61114 -10.26959 -9.90774 -9.44481 -9.22870 -8.67727 -7.88240 -5.38046 0.28293 0.42719 1.45956 1.46331 1.49591 1.58213 1.85931 2.49487 2.76976 2.93087 3.27840 3.53169 3.63047 3.73085 3.77364 3.94427 3.99068 4.03002 4.21357 4.22508 4.23515 4.26233 4.37081 4.45559 4.47771 4.51970 4.54719 4.62089 4.66898 4.76722 4.79933 4.84978 4.96552 4.98230 5.02976 5.05650 5.15470 5.24707 5.31895 5.38183 5.48314 5.55014 5.59882 5.60827 5.61119 5.99666 6.09159 6.13891 6.36028 6.37905 7.10418 7.16236 7.79987 8.37367 9.19078 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.016121 B = 0.003321 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.469063 B = 8428.808532 C = 9169.893379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.055 4.055 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.262 4.262 8 H 0.074 0.926 9 N -0.611 5.611 10 C 0.142 3.858 11 C 0.059 3.941 12 N -0.532 5.532 13 C 0.079 3.921 14 H 0.126 0.874 15 C -0.155 4.155 16 C -0.118 4.118 17 C 0.107 3.893 18 N -0.563 5.563 19 C 0.117 3.883 20 C -0.136 4.136 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.115 4.115 24 C -0.123 4.123 25 C 0.519 3.481 26 O -0.565 6.565 27 C 0.063 3.937 28 C 0.194 3.806 29 H 0.249 0.751 30 H 0.006 0.994 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.124 0.876 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.147 0.853 44 H 0.115 0.885 45 H 0.040 0.960 46 H 0.045 0.955 47 H -0.018 1.018 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 -18.398 -17.802 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.250 4.250 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.217 1.217 6 H -0.220 1.220 7 C -0.392 4.392 8 H 0.092 0.908 9 N -0.335 5.335 10 C 0.016 3.984 11 C -0.069 4.069 12 N -0.256 5.256 13 C -0.032 4.032 14 H 0.143 0.857 15 C -0.194 4.194 16 C -0.156 4.156 17 C -0.013 4.013 18 N -0.293 5.293 19 C 0.027 3.973 20 C -0.155 4.155 21 C -0.132 4.132 22 C -0.140 4.140 23 C -0.133 4.133 24 C -0.143 4.143 25 C 0.308 3.692 26 O -0.442 6.442 27 C -0.066 4.066 28 C 0.068 3.932 29 H 0.058 0.942 30 H 0.024 0.976 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.135 0.865 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.142 0.858 41 H 0.166 0.834 42 H 0.171 0.829 43 H 0.165 0.835 44 H 0.133 0.867 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.000 1.000 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.435 -18.333 -17.028 25.025 hybrid contribution 0.439 1.477 0.004 1.541 sum 0.004 -16.856 -17.024 23.957 Atomic orbital electron populations 1.70219 1.07017 1.25795 1.55695 1.25980 0.96079 1.01936 1.00976 0.85111 0.78700 0.79352 0.76694 1.18488 1.21682 1.22042 1.19617 0.92111 0.85221 1.42260 0.90810 1.44362 1.33024 1.03404 1.52723 1.21170 0.97659 0.85679 0.93869 1.22510 0.88771 1.00107 0.95529 1.61765 1.35168 1.03558 1.25139 1.21722 0.90745 0.97630 0.93080 0.85687 1.22371 1.00125 1.00523 0.96356 1.21822 0.96141 0.99826 0.97821 1.21785 0.86014 1.03392 0.90151 1.45157 1.06268 1.70844 1.06996 1.17883 0.85841 0.94877 0.98655 1.21395 0.96357 0.97945 0.99838 1.21368 0.93491 0.98495 0.99883 1.21560 1.01081 0.93663 0.97707 1.21357 0.93863 1.00600 0.97502 1.21318 0.96286 0.96615 1.00057 1.20526 0.91904 0.75295 0.81444 1.90728 1.43348 1.50014 1.60096 1.22422 0.98123 0.89848 0.96193 1.20451 0.87671 0.95465 0.89640 0.94176 0.97579 0.91128 0.88331 0.93757 0.92037 0.88857 0.89621 0.86530 0.88379 0.91076 0.85842 0.83395 0.82948 0.83512 0.86740 0.94233 0.93692 0.99985 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.58 11.15 21.65 0.24 -58.34 16 2 C -0.05 -3.16 4.99 84.86 0.42 -2.73 16 3 Si 0.97 45.67 29.58 68.60 2.03 47.70 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 7 C -0.26 -14.78 9.62 84.03 0.81 -13.97 16 8 H 0.07 3.96 7.87 -2.91 -0.02 3.94 16 9 N -0.61 -32.56 3.03 -698.13 -2.11 -34.67 16 10 C 0.14 6.18 6.69 86.35 0.58 6.76 16 11 C 0.06 2.01 5.23 86.38 0.45 2.46 16 12 N -0.53 -19.89 4.35 -875.24 -3.80 -23.69 16 13 C 0.08 2.26 2.41 44.03 0.11 2.36 16 14 H 0.13 3.07 8.00 -2.38 -0.02 3.05 16 15 C -0.15 -3.20 4.61 30.71 0.14 -3.06 16 16 C -0.12 -1.55 6.02 30.66 0.18 -1.37 16 17 C 0.11 1.75 6.22 86.50 0.54 2.29 16 18 N -0.56 -14.43 2.88 -635.79 -1.83 -16.26 16 19 C 0.12 3.12 4.46 38.15 0.17 3.29 16 20 C -0.14 -3.27 9.82 22.39 0.22 -3.05 16 21 C -0.11 -2.23 10.04 22.25 0.22 -2.01 16 22 C -0.12 -2.18 10.04 22.29 0.22 -1.95 16 23 C -0.11 -2.29 10.04 22.25 0.22 -2.07 16 24 C -0.12 -3.08 9.27 22.39 0.21 -2.87 16 25 C 0.52 16.96 5.63 87.71 0.49 17.46 16 26 O -0.57 -24.42 15.97 -3.06 -0.05 -24.47 16 27 C 0.06 2.71 4.75 86.38 0.41 3.12 16 28 C 0.19 10.47 5.38 86.35 0.46 10.93 16 29 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 31 H 0.07 2.84 7.96 -2.39 -0.02 2.82 16 32 H 0.10 2.68 8.01 -2.39 -0.02 2.66 16 33 H 0.04 1.42 7.15 -2.39 -0.02 1.40 16 34 H 0.06 1.53 5.94 -2.38 -0.01 1.51 16 35 H 0.09 1.70 7.35 -2.39 -0.02 1.68 16 36 H 0.09 0.97 8.12 -2.39 -0.02 0.95 16 37 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 1.21 8.08 -2.39 -0.02 1.19 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.12 2.83 8.06 -2.91 -0.02 2.81 16 41 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 43 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 44 H 0.11 2.87 8.06 -2.91 -0.02 2.84 16 45 H 0.04 1.60 6.44 -2.39 -0.02 1.59 16 46 H 0.04 1.99 6.98 -2.39 -0.02 1.97 16 47 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 48 H 0.05 3.26 6.22 -2.39 -0.01 3.24 16 Total: -1.00 -79.14 372.79 1.29 -77.85 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.94 Total: 16.29 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 5.87 Total: 15.58 kcal Atomic # 7 Polarization: -125.46 SS G_CDS: -7.50 Total: -132.96 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.05 Total: -24.47 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -79.14 1.29 -77.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072517308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.617 kcal (2) G-P(sol) polarization free energy of solvation -79.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds