Wall clock time and date at job start Tue Mar 31 2020 05:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47280 * 2 1 4 4 C 1.46904 * 110.99707 * 299.45913 * 3 2 1 5 5 C 1.53002 * 109.46848 * 288.55361 * 4 3 2 6 6 C 1.46893 * 111.00000 * 63.41297 * 3 2 1 7 7 C 1.53001 * 109.47292 * 66.04782 * 6 3 2 8 8 S 1.81399 * 109.47001 * 179.97438 * 7 6 3 9 9 C 1.81397 * 103.00111 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47513 * 179.97438 * 9 8 7 11 11 O 1.21287 * 120.00154 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00368 * 180.02562 * 10 9 8 13 13 C 1.46969 * 120.59696 * 180.02562 * 12 10 9 14 14 C 1.53377 * 108.63254 * 235.24581 * 13 12 10 15 15 N 1.46963 * 108.63407 * 310.57686 * 14 13 12 16 16 C 1.36940 * 120.58848 * 235.20498 * 15 14 13 17 17 H 1.08004 * 119.99904 * 149.33381 * 16 15 14 18 18 C 1.38811 * 119.99950 * 329.04937 * 16 15 14 19 19 N 1.31617 * 120.00110 * 347.88843 * 18 16 15 20 20 Si 1.86800 * 119.99757 * 167.89045 * 18 16 15 21 21 H 1.48501 * 109.47213 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47026 * 120.00268 * 20 18 16 23 23 H 1.48496 * 109.47133 * 240.00010 * 20 18 16 24 24 C 1.46959 * 118.81562 * 55.47747 * 15 14 13 25 25 C 1.46965 * 120.59389 * 0.02562 * 12 10 9 26 26 H 1.09003 * 109.46873 * 186.27201 * 1 2 3 27 27 H 1.09002 * 109.46956 * 306.26670 * 1 2 3 28 28 H 1.08995 * 109.46977 * 66.26675 * 1 2 3 29 29 H 1.08995 * 109.46973 * 239.99486 * 2 1 3 30 30 H 1.09010 * 109.46828 * 119.99793 * 2 1 3 31 31 H 1.08992 * 109.47094 * 48.55044 * 4 3 2 32 32 H 1.09001 * 109.47075 * 168.55418 * 4 3 2 33 33 H 1.08997 * 109.47431 * 65.92675 * 5 4 3 34 34 H 1.09004 * 109.46958 * 185.92493 * 5 4 3 35 35 H 1.09000 * 109.47192 * 305.92506 * 5 4 3 36 36 H 1.09002 * 109.47000 * 306.04382 * 6 3 2 37 37 H 1.09002 * 109.46827 * 186.05224 * 6 3 2 38 38 H 1.08998 * 109.46989 * 60.00031 * 7 6 3 39 39 H 1.08997 * 109.47113 * 299.99835 * 7 6 3 40 40 H 1.09001 * 109.46894 * 60.00055 * 9 8 7 41 41 H 1.08999 * 109.47098 * 300.00362 * 9 8 7 42 42 H 1.08999 * 109.61030 * 115.50237 * 13 12 10 43 43 H 1.09000 * 109.74929 * 355.06962 * 13 12 10 44 44 H 1.08993 * 109.60813 * 190.82716 * 14 13 12 45 45 H 1.09000 * 109.74702 * 70.40410 * 14 13 12 46 46 H 0.96997 * 120.00229 * 179.97438 * 19 18 16 47 47 H 1.09001 * 109.61094 * 64.26736 * 24 15 14 48 48 H 1.09005 * 109.61295 * 184.77951 * 24 15 14 49 49 H 1.08998 * 109.60980 * 244.49738 * 25 12 10 50 50 H 1.09002 * 109.60756 * 4.83412 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5593 2.1061 -1.1942 5 6 2.3030 1.5824 -2.4245 6 6 1.6166 2.0859 1.2264 7 6 2.3172 1.4521 2.4298 8 16 1.8198 2.3182 3.9441 9 6 2.7372 1.4377 5.2379 10 6 2.4261 2.0497 6.5794 11 8 1.6604 2.9873 6.6554 12 7 2.9985 1.5551 7.6948 13 6 2.7040 2.1415 9.0098 14 6 4.0264 2.5458 9.6734 15 7 4.9567 1.4107 9.5963 16 6 5.5391 0.9088 10.7295 17 1 5.7932 -0.1393 10.7872 18 6 5.8081 1.7483 11.8018 19 7 5.7295 3.0535 11.6516 20 14 6.2817 1.0255 13.4579 21 1 6.2995 -0.4564 13.3644 22 1 7.6306 1.5130 13.8432 23 1 5.2924 1.4455 14.4825 24 6 5.2555 0.8279 8.2807 25 6 3.9286 0.4198 7.6178 26 1 -0.3633 -1.0216 0.1123 27 1 -0.3633 0.6079 0.8286 28 1 -0.3633 0.4136 -0.9407 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 0.4884 1.9492 -1.3229 32 1 1.7588 3.1710 -1.0750 33 1 2.0213 0.5451 -2.6051 34 1 2.0398 2.1868 -3.2926 35 1 3.3776 1.6424 -2.2523 36 1 0.5366 2.0071 1.3516 37 1 1.8981 3.1364 1.1536 38 1 3.3971 1.5310 2.3046 39 1 2.0356 0.4017 2.5025 40 1 3.8066 1.5162 5.0424 41 1 2.4444 0.3878 5.2403 42 1 2.1922 1.4070 9.6316 43 1 2.0721 3.0213 8.8876 44 1 3.8482 2.8025 10.7175 45 1 4.4522 3.4038 9.1533 46 1 5.9171 3.6401 12.4009 47 1 5.7656 1.5655 7.6611 48 1 5.8893 -0.0502 8.4050 49 1 3.5039 -0.4371 8.1407 50 1 4.1042 0.1609 6.5737 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073851888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:06 Heat of formation + Delta-G solvation = 1.277712 kcal Electronic energy + Delta-G solvation = -25944.139902 eV Core-core repulsion = 22326.786149 eV Total energy + Delta-G solvation = -3617.353752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.59377 -38.92144 -36.81474 -33.96625 -32.65038 -31.44603 -31.29645 -31.06712 -29.26180 -28.27663 -26.74869 -24.76996 -23.71036 -22.97992 -22.68006 -20.71021 -20.07174 -18.69322 -17.28230 -16.84542 -16.63292 -16.20982 -16.13825 -15.51903 -15.08558 -14.88229 -14.81475 -14.37607 -13.84365 -13.75494 -13.65487 -13.43644 -13.36357 -13.18850 -13.01679 -12.95903 -12.73248 -12.36216 -12.14542 -11.93910 -11.82868 -11.74255 -11.59143 -11.31489 -11.20495 -10.90633 -10.84238 -10.76630 -10.59251 -10.26583 -10.05988 -9.95272 -9.88490 -9.49718 -8.68521 -8.63052 -8.31555 -7.67626 -6.71725 -5.87396 -3.37815 1.34690 2.46302 2.86338 3.31541 3.38105 3.40274 3.41929 3.62120 4.40053 4.44203 4.52992 4.62923 4.69113 4.79035 4.87815 4.91308 4.97101 5.02237 5.11503 5.14351 5.20139 5.23923 5.26499 5.30865 5.45274 5.52642 5.57634 5.61997 5.63083 5.66805 5.70062 5.78321 5.81501 5.94673 6.09029 6.29126 6.33915 6.46271 6.64585 6.65224 6.68345 6.80460 7.23365 7.54676 7.68933 7.80330 8.35036 8.45023 9.09474 9.70467 10.28135 11.19612 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.032183 B = 0.001954 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.804351 B =14328.830724 C =14571.709262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.043 3.957 3 N -0.534 5.534 4 C 0.045 3.955 5 C -0.147 4.147 6 C 0.069 3.931 7 C -0.105 4.105 8 S -0.182 6.182 9 C -0.119 4.119 10 C 0.525 3.475 11 O -0.535 6.535 12 N -0.592 5.592 13 C 0.088 3.912 14 C 0.158 3.842 15 N -0.591 5.591 16 C -0.258 4.258 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.902 5.902 20 Si 0.907 3.093 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.288 1.288 24 C 0.131 3.869 25 C 0.087 3.913 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.024 0.976 46 H 0.256 0.744 47 H 0.024 0.976 48 H 0.068 0.932 49 H 0.068 0.932 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 -6.490 -23.924 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.085 4.085 3 N -0.258 5.258 4 C -0.083 4.083 5 C -0.204 4.204 6 C -0.060 4.060 7 C -0.254 4.254 8 S 0.043 5.957 9 C -0.271 4.271 10 C 0.310 3.690 11 O -0.413 6.413 12 N -0.325 5.325 13 C -0.035 4.035 14 C 0.032 3.968 15 N -0.314 5.314 16 C -0.388 4.388 17 H 0.085 0.915 18 C -0.194 4.194 19 N -0.546 5.546 20 Si 0.736 3.264 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.214 1.214 24 C 0.003 3.997 25 C -0.038 4.038 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.120 0.880 45 H 0.042 0.958 46 H 0.066 0.934 47 H 0.042 0.958 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.577 -5.028 -23.627 25.633 hybrid contribution 0.403 -1.495 0.819 1.751 sum -8.175 -6.522 -22.808 25.091 Atomic orbital electron populations 1.22439 0.98167 1.02657 1.02204 1.22239 0.93030 0.90248 1.02939 1.62267 1.59576 1.02382 1.01604 1.22145 0.97702 0.98362 0.90096 1.21762 1.01466 1.00851 0.96350 1.21763 0.98093 0.98417 0.87699 1.23486 1.04390 1.02189 0.95317 1.87381 1.62138 1.47431 0.98772 1.23513 1.04472 1.03371 0.95696 1.19546 0.81125 0.83697 0.84609 1.90701 1.36304 1.28222 1.86063 1.47992 1.44210 1.33409 1.06912 1.22556 1.00973 0.98342 0.81623 1.21219 0.85461 0.88882 1.01241 1.43985 1.49326 1.37033 1.01041 1.19223 1.35177 0.92326 0.92048 0.91497 1.25197 0.99266 0.95192 0.99756 1.69973 1.52294 1.01681 1.30615 0.86164 0.77852 0.78525 0.83841 1.20191 1.21596 1.21447 1.21374 0.92388 0.97482 0.88451 1.22515 0.92546 0.88365 1.00334 0.91929 0.91986 0.92407 0.90451 0.90521 0.94077 0.90813 0.92905 0.92350 0.91715 0.93243 0.89786 0.89275 0.90226 0.87279 0.87620 0.92069 0.90016 0.88014 0.95777 0.93403 0.95801 0.91395 0.91355 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.26 9.23 37.16 0.34 -0.92 16 2 C 0.04 0.29 5.71 -3.82 -0.02 0.27 16 3 N -0.53 -4.16 4.67 -234.63 -1.10 -5.26 16 4 C 0.04 0.30 5.53 -3.82 -0.02 0.28 16 5 C -0.15 -0.85 9.83 37.16 0.37 -0.48 16 6 C 0.07 0.60 4.78 -3.83 -0.02 0.58 16 7 C -0.10 -0.98 5.87 37.16 0.22 -0.76 16 8 S -0.18 -2.40 20.87 -107.50 -2.24 -4.65 16 9 C -0.12 -1.54 4.76 36.00 0.17 -1.37 16 10 C 0.52 9.18 7.72 -10.99 -0.08 9.10 16 11 O -0.54 -11.24 15.28 5.55 0.08 -11.15 16 12 N -0.59 -10.60 2.95 -172.19 -0.51 -11.11 16 13 C 0.09 1.77 6.59 -3.59 -0.02 1.75 16 14 C 0.16 3.75 5.47 -3.59 -0.02 3.73 16 15 N -0.59 -14.19 2.95 -171.75 -0.51 -14.69 16 16 C -0.26 -6.77 9.58 -15.06 -0.14 -6.91 16 17 H 0.07 1.71 7.86 -52.48 -0.41 1.29 16 18 C 0.00 0.13 5.02 -17.43 -0.09 0.05 16 19 N -0.90 -25.58 11.07 55.49 0.61 -24.96 16 20 Si 0.91 21.04 29.57 -169.99 -5.03 16.01 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.13 2.51 6.70 -3.35 -0.02 2.49 16 25 C 0.09 1.36 6.52 -3.35 -0.02 1.34 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.46 6.08 -51.93 -0.32 0.15 16 28 H 0.06 0.36 6.52 -51.93 -0.34 0.02 16 29 H 0.08 0.48 6.79 -51.93 -0.35 0.13 16 30 H 0.08 0.53 6.32 -51.92 -0.33 0.20 16 31 H 0.04 0.27 5.92 -51.93 -0.31 -0.04 16 32 H 0.07 0.50 7.82 -51.93 -0.41 0.09 16 33 H 0.05 0.29 6.99 -51.93 -0.36 -0.07 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.44 6.00 -51.93 -0.31 0.13 16 37 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 38 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.08 0.67 6.48 -51.93 -0.34 0.34 16 40 H 0.11 1.26 7.72 -51.92 -0.40 0.85 16 41 H 0.11 1.12 7.91 -51.92 -0.41 0.71 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.08 1.66 7.00 -51.93 -0.36 1.30 16 44 H 0.10 2.66 6.02 -51.93 -0.31 2.35 16 45 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.07 1.23 7.93 -51.93 -0.41 0.81 16 49 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 50 H 0.07 0.83 5.91 -51.93 -0.31 0.52 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -30.93 392.57 -10.74 -41.67 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -8.60 Total: -0.91 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 0.63 Total: 9.14 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -1.50 Total: -56.03 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.15 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -2.24 Total: -4.65 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.93 -10.74 -41.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073851888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.945 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds