Wall clock time and date at job start Tue Mar 31 2020 05:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 N 1.46506 * 109.47182 * 120.00044 * 2 1 3 5 5 C 1.34773 * 119.99969 * 84.72073 * 4 2 1 6 6 O 1.21281 * 120.00220 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00080 * 180.02562 * 5 4 2 8 8 N 1.46889 * 109.47109 * 180.02562 * 7 5 4 9 9 C 1.46959 * 111.00102 * 293.79785 * 8 7 5 10 10 C 1.53049 * 109.36362 * 176.81680 * 9 8 7 11 11 N 1.46955 * 109.36833 * 58.40206 * 10 9 8 12 12 C 1.46902 * 111.00055 * 176.80816 * 11 10 9 13 13 C 1.53001 * 109.47237 * 293.80141 * 12 11 10 14 14 C 1.53002 * 109.46839 * 179.97438 * 13 12 11 15 15 S 1.80999 * 109.46893 * 179.97438 * 14 13 12 16 16 C 1.76203 * 100.00117 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99439 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00256 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99886 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47154 * 60.00352 * 20 18 16 22 22 H 1.48503 * 109.46657 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47080 * 300.00015 * 20 18 16 24 24 C 1.46955 * 110.87907 * 300.67589 * 11 10 9 25 25 C 1.46965 * 110.99870 * 170.00198 * 8 7 5 26 26 H 1.09002 * 109.47097 * 60.00557 * 1 2 3 27 27 H 1.09007 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47379 * 300.00069 * 1 2 3 29 29 H 1.09005 * 109.47189 * 239.99632 * 2 1 3 30 30 H 1.09005 * 109.47224 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47121 * 299.99952 * 3 2 1 32 32 H 1.08997 * 109.47013 * 59.99707 * 3 2 1 33 33 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 34 34 H 1.09004 * 109.46762 * 300.00389 * 7 5 4 35 35 H 1.08998 * 109.46924 * 59.99727 * 7 5 4 36 36 H 1.09007 * 109.48694 * 296.78149 * 9 8 7 37 37 H 1.09001 * 109.48949 * 56.84570 * 9 8 7 38 38 H 1.09002 * 109.48821 * 298.42916 * 10 9 8 39 39 H 1.09010 * 109.48725 * 178.36933 * 10 9 8 40 40 H 1.09007 * 109.46571 * 53.80019 * 12 11 10 41 41 H 1.08994 * 109.47024 * 173.79559 * 12 11 10 42 42 H 1.08995 * 109.47009 * 299.99812 * 13 12 11 43 43 H 1.09001 * 109.47006 * 60.00064 * 13 12 11 44 44 H 1.08995 * 109.47427 * 299.99875 * 14 13 12 45 45 H 1.09001 * 109.47009 * 60.00384 * 14 13 12 46 46 H 0.96998 * 120.00409 * 180.02562 * 19 18 16 47 47 H 1.08990 * 109.49170 * 299.35491 * 24 11 10 48 48 H 1.08999 * 109.48583 * 179.28614 * 24 11 10 49 49 H 1.08995 * 109.48409 * 303.15092 * 25 8 7 50 50 H 1.08997 * 109.48809 * 63.21611 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1417 -2.0327 1.1963 6 8 1.8489 -2.6687 0.2060 7 6 2.6435 -2.7432 2.4270 8 7 2.6873 -4.1895 2.1737 9 6 1.3345 -4.7327 1.9875 10 6 1.4281 -6.2222 1.6483 11 7 2.1304 -6.9254 2.7309 12 6 2.1741 -8.3717 2.4777 13 6 0.7560 -8.9430 2.5371 14 6 0.8015 -10.4493 2.2728 15 16 -0.8760 -11.1252 2.3437 16 6 -0.5362 -12.8225 2.0145 17 1 0.4801 -13.1469 1.8459 18 6 -1.5744 -13.7428 1.9728 19 7 -2.8129 -13.3475 2.1787 20 14 -1.2142 -15.5420 1.6230 21 1 -0.3030 -16.0764 2.6667 22 1 -2.4840 -16.3119 1.6325 23 1 -0.5694 -15.6680 0.2913 24 6 3.4832 -6.3822 2.9171 25 6 3.3896 -4.8927 3.2564 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 2.2490 -0.1823 1.9895 34 1 3.6446 -2.3867 2.6695 35 1 1.9733 -2.5403 3.2623 36 1 0.7614 -4.6042 2.9058 37 1 0.8395 -4.2045 1.1726 38 1 1.9778 -6.3489 0.7157 39 1 0.4247 -6.6338 1.5382 40 1 2.5987 -8.5551 1.4906 41 1 2.7923 -8.8545 3.2345 42 1 0.3315 -8.7596 3.5241 43 1 0.1379 -8.4602 1.7802 44 1 1.2259 -10.6324 1.2856 45 1 1.4198 -10.9324 3.0294 46 1 -3.5385 -13.9906 2.1499 47 1 4.0562 -6.5107 1.9989 48 1 3.9781 -6.9104 3.7320 49 1 4.3929 -4.4811 3.3664 50 1 2.8399 -4.7659 4.1890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074981337.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:42 Heat of formation + Delta-G solvation = -38.703254 kcal Electronic energy + Delta-G solvation = -25579.960944 eV Core-core repulsion = 21960.873487 eV Total energy + Delta-G solvation = -3619.087457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.40367 -39.05904 -36.57457 -35.68550 -32.83743 -32.37644 -31.97184 -30.95307 -28.89004 -27.68334 -26.01224 -25.39397 -23.82650 -23.50019 -21.74703 -20.77256 -20.72133 -19.83008 -17.46239 -17.37447 -16.80542 -16.15729 -15.86135 -15.24343 -15.07129 -14.84390 -14.76539 -14.60340 -14.45367 -14.42980 -13.93613 -13.73548 -13.41833 -13.29387 -12.81917 -12.80320 -12.67364 -12.37906 -12.23138 -11.87146 -11.80471 -11.59316 -11.47470 -11.41199 -11.29794 -11.02846 -10.98945 -10.95301 -10.70173 -10.56788 -10.16676 -9.92254 -9.47528 -9.45717 -9.00641 -8.57821 -8.25541 -8.23042 -6.47058 -6.17971 -3.87787 2.37111 2.67744 3.25109 3.26590 3.30951 3.58875 3.70160 3.99751 4.27584 4.29713 4.50371 4.59327 4.70716 4.78158 4.85179 4.91200 4.99378 5.10448 5.13709 5.17771 5.22586 5.27565 5.32309 5.33170 5.40500 5.44481 5.46396 5.48271 5.64310 5.67023 5.72496 5.81897 5.83677 5.84359 5.92117 5.96255 6.07432 6.15298 6.17865 6.43101 6.63934 6.66633 6.78997 6.82939 7.14371 7.16036 7.18989 7.64756 7.96756 8.41105 9.28037 10.90179 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.001765 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.903973 B =15860.820443 C =16702.010873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 C -0.160 4.160 4 N -0.733 5.733 5 C 0.513 3.487 6 O -0.516 6.516 7 C 0.037 3.963 8 N -0.523 5.523 9 C 0.055 3.945 10 C 0.056 3.944 11 N -0.541 5.541 12 C 0.061 3.939 13 C -0.093 4.093 14 C -0.112 4.112 15 S -0.132 6.132 16 C -0.516 4.516 17 H 0.071 0.929 18 C 0.071 3.929 19 N -0.870 5.870 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.058 3.942 25 C 0.060 3.940 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.398 0.602 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.038 0.962 37 H 0.095 0.905 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.033 0.967 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.267 0.733 47 H 0.041 0.959 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.058 30.698 1.042 33.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 C -0.218 4.218 4 N -0.387 5.387 5 C 0.299 3.701 6 O -0.390 6.390 7 C -0.095 4.095 8 N -0.249 5.249 9 C -0.073 4.073 10 C -0.072 4.072 11 N -0.265 5.265 12 C -0.068 4.068 13 C -0.132 4.132 14 C -0.262 4.262 15 S 0.096 5.904 16 C -0.665 4.665 17 H 0.089 0.911 18 C -0.138 4.138 19 N -0.506 5.506 20 Si 0.744 3.256 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.071 4.071 25 C -0.068 4.068 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.232 0.768 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.113 0.887 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.098 0.902 49 H 0.096 0.904 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.653 30.666 0.508 32.809 hybrid contribution 1.491 -1.477 -0.023 2.099 sum 13.144 29.189 0.486 32.016 Atomic orbital electron populations 1.22191 0.95221 1.02821 1.02042 1.20919 0.94210 0.92713 0.88928 1.22074 1.01671 0.95080 1.02945 1.46135 1.68660 1.07028 1.16833 1.20611 0.77590 0.81990 0.89920 1.90706 1.48104 1.65451 1.34733 1.21935 1.02544 0.90148 0.94862 1.61863 1.19037 1.00631 1.43322 1.22356 0.88417 0.95296 1.01223 1.22183 0.99907 0.92576 0.92500 1.62190 1.16512 1.03917 1.43926 1.22160 0.98465 0.86455 0.99697 1.21274 0.95195 0.93788 1.02934 1.23233 1.03270 0.97143 1.02507 1.84619 1.04371 1.07926 1.93501 1.22663 0.96020 0.92051 1.55743 0.91052 1.25007 0.94515 0.99455 0.94803 1.70014 0.98904 1.35058 1.46599 0.86230 0.77716 0.82636 0.78985 1.19957 1.20833 1.19972 1.22108 0.90333 0.93815 1.00830 1.22186 0.98482 0.93942 0.92231 0.91628 0.91938 0.92551 0.89416 0.91997 0.90914 0.92094 0.76845 0.87986 0.91860 0.94423 0.88664 0.93905 0.89522 0.94868 0.90907 0.90872 0.91681 0.92355 0.92180 0.92299 0.94074 0.90224 0.90429 0.93775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.48 37.16 0.35 -0.70 16 2 C 0.14 0.84 3.18 -67.93 -0.22 0.63 16 3 C -0.16 -0.57 9.38 37.16 0.35 -0.22 16 4 N -0.73 -4.40 5.08 -53.80 -0.27 -4.67 16 5 C 0.51 4.72 7.49 -10.98 -0.08 4.64 16 6 O -0.52 -7.00 14.01 5.56 0.08 -6.92 16 7 C 0.04 0.27 5.45 -4.98 -0.03 0.25 16 8 N -0.52 -5.53 4.45 -235.90 -1.05 -6.58 16 9 C 0.05 0.66 5.26 -3.77 -0.02 0.64 16 10 C 0.06 0.76 5.41 -3.77 -0.02 0.74 16 11 N -0.54 -7.19 4.71 -234.46 -1.10 -8.29 16 12 C 0.06 0.88 4.96 -3.82 -0.02 0.87 16 13 C -0.09 -1.61 5.15 -26.73 -0.14 -1.75 16 14 C -0.11 -2.35 5.67 37.16 0.21 -2.14 16 15 S -0.13 -3.57 21.44 -107.50 -2.30 -5.87 16 16 C -0.52 -15.17 9.50 30.94 0.29 -14.88 16 17 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 18 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 20 Si 0.92 21.93 29.55 -169.99 -5.02 16.91 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 24 C 0.06 0.63 5.61 -3.77 -0.02 0.61 16 25 C 0.06 0.55 5.61 -3.76 -0.02 0.53 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.73 7.59 -51.93 -0.39 0.34 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.40 1.22 8.60 -40.82 -0.35 0.87 16 34 H 0.10 0.53 8.03 -51.93 -0.42 0.12 16 35 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 36 H 0.04 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.10 1.27 5.85 -51.93 -0.30 0.96 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.22 6.34 -51.92 -0.33 0.89 16 40 H 0.03 0.49 8.12 -51.92 -0.42 0.06 16 41 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.06 1.15 6.49 -51.93 -0.34 0.81 16 44 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 45 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 49 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 50 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 406.67 15.07 6.13 6.13 Total: -1.00 -34.51 406.67 -11.54 -46.05 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -9.27 Total: -2.19 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 0.55 Total: -8.82 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -1.69 Total: -45.28 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: 0.08 Total: -6.92 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -2.30 Total: -5.87 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.51 -11.54 -46.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981337.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.347 kcal (2) G-P(sol) polarization free energy of solvation -34.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds