Wall clock time and date at job start Tue Mar 31 2020 05:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 N 1.46506 * 109.47182 * 120.00044 * 2 1 3 5 5 C 1.34773 * 119.99969 * 84.72073 * 4 2 1 6 6 O 1.21281 * 120.00220 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00080 * 180.02562 * 5 4 2 8 8 N 1.46889 * 109.47109 * 180.02562 * 7 5 4 9 9 C 1.46959 * 111.00102 * 293.79785 * 8 7 5 10 10 C 1.53049 * 109.36362 * 176.81680 * 9 8 7 11 11 N 1.46955 * 109.36833 * 58.40206 * 10 9 8 12 12 C 1.46902 * 111.00055 * 176.80816 * 11 10 9 13 13 C 1.53001 * 109.47237 * 293.80141 * 12 11 10 14 14 C 1.53002 * 109.46839 * 179.97438 * 13 12 11 15 15 S 1.80999 * 109.46893 * 179.97438 * 14 13 12 16 16 C 1.76203 * 100.00117 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99439 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00256 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99886 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47154 * 60.00352 * 20 18 16 22 22 H 1.48503 * 109.46657 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47080 * 300.00015 * 20 18 16 24 24 C 1.46955 * 110.87907 * 300.67589 * 11 10 9 25 25 C 1.46965 * 110.99870 * 170.00198 * 8 7 5 26 26 H 1.09002 * 109.47097 * 60.00557 * 1 2 3 27 27 H 1.09007 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47379 * 300.00069 * 1 2 3 29 29 H 1.09005 * 109.47189 * 239.99632 * 2 1 3 30 30 H 1.09005 * 109.47224 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47121 * 299.99952 * 3 2 1 32 32 H 1.08997 * 109.47013 * 59.99707 * 3 2 1 33 33 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 34 34 H 1.09004 * 109.46762 * 300.00389 * 7 5 4 35 35 H 1.08998 * 109.46924 * 59.99727 * 7 5 4 36 36 H 1.09007 * 109.48694 * 296.78149 * 9 8 7 37 37 H 1.09001 * 109.48949 * 56.84570 * 9 8 7 38 38 H 1.09002 * 109.48821 * 298.42916 * 10 9 8 39 39 H 1.09010 * 109.48725 * 178.36933 * 10 9 8 40 40 H 1.09007 * 109.46571 * 53.80019 * 12 11 10 41 41 H 1.08994 * 109.47024 * 173.79559 * 12 11 10 42 42 H 1.08995 * 109.47009 * 299.99812 * 13 12 11 43 43 H 1.09001 * 109.47006 * 60.00064 * 13 12 11 44 44 H 1.08995 * 109.47427 * 299.99875 * 14 13 12 45 45 H 1.09001 * 109.47009 * 60.00384 * 14 13 12 46 46 H 0.96998 * 120.00409 * 180.02562 * 19 18 16 47 47 H 1.08990 * 109.49170 * 299.35491 * 24 11 10 48 48 H 1.08999 * 109.48583 * 179.28614 * 24 11 10 49 49 H 1.08995 * 109.48409 * 303.15092 * 25 8 7 50 50 H 1.08997 * 109.48809 * 63.21611 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1417 -2.0327 1.1963 6 8 1.8489 -2.6687 0.2060 7 6 2.6435 -2.7432 2.4270 8 7 2.6873 -4.1895 2.1737 9 6 1.3345 -4.7327 1.9875 10 6 1.4281 -6.2222 1.6483 11 7 2.1304 -6.9254 2.7309 12 6 2.1741 -8.3717 2.4777 13 6 0.7560 -8.9430 2.5371 14 6 0.8015 -10.4493 2.2728 15 16 -0.8760 -11.1252 2.3437 16 6 -0.5362 -12.8225 2.0145 17 1 0.4801 -13.1469 1.8459 18 6 -1.5744 -13.7428 1.9728 19 7 -2.8129 -13.3475 2.1787 20 14 -1.2142 -15.5420 1.6230 21 1 -0.3030 -16.0764 2.6667 22 1 -2.4840 -16.3119 1.6325 23 1 -0.5694 -15.6680 0.2913 24 6 3.4832 -6.3822 2.9171 25 6 3.3896 -4.8927 3.2564 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 2.2490 -0.1823 1.9895 34 1 3.6446 -2.3867 2.6695 35 1 1.9733 -2.5403 3.2623 36 1 0.7614 -4.6042 2.9058 37 1 0.8395 -4.2045 1.1726 38 1 1.9778 -6.3489 0.7157 39 1 0.4247 -6.6338 1.5382 40 1 2.5987 -8.5551 1.4906 41 1 2.7923 -8.8545 3.2345 42 1 0.3315 -8.7596 3.5241 43 1 0.1379 -8.4602 1.7802 44 1 1.2259 -10.6324 1.2856 45 1 1.4198 -10.9324 3.0294 46 1 -3.5385 -13.9906 2.1499 47 1 4.0562 -6.5107 1.9989 48 1 3.9781 -6.9104 3.7320 49 1 4.3929 -4.4811 3.3664 50 1 2.8399 -4.7659 4.1890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074981337.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:41 Heat of formation + Delta-G solvation = -63.935085 kcal Electronic energy + Delta-G solvation = -25581.055078 eV Core-core repulsion = 21960.873487 eV Total energy + Delta-G solvation = -3620.181591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.188 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.14090 -39.94528 -37.34278 -36.56059 -34.61957 -34.04828 -32.63819 -31.87459 -29.79224 -28.09945 -27.86241 -26.81725 -24.84011 -24.56262 -22.33451 -22.04368 -21.41448 -20.76093 -19.55552 -18.08605 -17.57198 -16.97248 -16.89786 -16.74811 -16.31729 -16.14404 -15.77761 -15.70292 -15.57401 -15.19036 -15.04745 -14.88105 -14.62509 -14.15184 -13.89663 -13.62726 -13.39208 -13.26087 -13.14772 -13.08869 -12.92771 -12.91880 -12.70173 -12.60852 -12.42232 -12.29771 -12.21877 -12.01083 -11.90266 -11.88195 -11.58559 -11.26785 -11.13235 -10.70111 -10.32529 -10.06901 -9.42142 -9.23984 -8.67264 -8.37223 -6.14031 1.30771 1.40778 1.47403 1.69556 1.73680 2.11552 2.28314 2.87744 2.96692 2.98984 3.32605 3.77964 3.88572 3.91535 3.99843 4.08059 4.15128 4.18046 4.24814 4.29981 4.32971 4.37811 4.38937 4.49557 4.52675 4.57317 4.59877 4.72594 4.73609 4.76175 4.79950 4.87630 4.90393 4.93657 5.03605 5.04097 5.06152 5.17963 5.26612 5.30020 5.32029 5.38930 5.60777 5.86278 5.93711 6.11917 6.16047 6.17670 6.65690 7.04420 7.36615 8.72062 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.001765 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.903973 B =15860.820443 C =16702.010873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 C -0.151 4.151 4 N -0.717 5.717 5 C 0.508 3.492 6 O -0.569 6.569 7 C 0.039 3.961 8 N -0.541 5.541 9 C 0.066 3.934 10 C 0.059 3.941 11 N -0.543 5.543 12 C 0.072 3.928 13 C -0.081 4.081 14 C -0.087 4.087 15 S -0.198 6.198 16 C -0.540 4.540 17 H 0.073 0.927 18 C 0.015 3.985 19 N -0.908 5.908 20 Si 0.995 3.005 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.265 1.265 24 C 0.054 3.946 25 C 0.064 3.936 26 H 0.074 0.926 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.415 0.585 34 H 0.134 0.866 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.272 0.728 47 H 0.032 0.968 48 H 0.096 0.904 49 H 0.106 0.894 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.181 31.889 2.281 35.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 C -0.208 4.208 4 N -0.371 5.371 5 C 0.294 3.706 6 O -0.447 6.447 7 C -0.091 4.091 8 N -0.266 5.266 9 C -0.062 4.062 10 C -0.069 4.069 11 N -0.268 5.268 12 C -0.058 4.058 13 C -0.120 4.120 14 C -0.236 4.236 15 S 0.030 5.970 16 C -0.688 4.688 17 H 0.091 0.909 18 C -0.190 4.190 19 N -0.544 5.544 20 Si 0.817 3.183 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.190 1.190 24 C -0.074 4.074 25 C -0.064 4.064 26 H 0.093 0.907 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.252 0.748 34 H 0.151 0.849 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.051 0.949 48 H 0.115 0.885 49 H 0.124 0.876 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.795 31.919 1.783 34.818 hybrid contribution 0.858 -1.720 -0.412 1.966 sum 14.654 30.199 1.371 33.594 Atomic orbital electron populations 1.22153 0.95422 1.01087 1.03205 1.20942 0.94052 0.94103 0.87995 1.22008 1.01817 0.92948 1.04064 1.46028 1.67309 1.06264 1.17479 1.21041 0.76930 0.82752 0.89829 1.90693 1.50623 1.66696 1.36712 1.22042 1.04703 0.88082 0.94304 1.61799 1.17840 1.02491 1.44504 1.22110 0.89667 0.93946 1.00483 1.22101 0.98918 0.93850 0.92052 1.62184 1.18227 1.03059 1.43351 1.21983 0.96169 0.87501 1.00125 1.21142 0.97297 0.91278 1.02242 1.23148 0.98760 0.99001 1.02719 1.84652 1.10281 1.08355 1.93702 1.23023 0.96413 0.93041 1.56343 0.90897 1.26090 0.94110 1.04727 0.94080 1.70153 1.00009 1.36937 1.47289 0.85051 0.78017 0.76016 0.79235 1.18779 1.19875 1.19025 1.22255 0.88675 0.95389 1.01056 1.22227 0.99864 0.92570 0.91698 0.90707 0.95032 0.91163 0.92172 0.91648 0.90301 0.90474 0.74753 0.84873 0.89882 0.94370 0.90398 0.95575 0.90975 0.95087 0.89472 0.91406 0.92483 0.92307 0.91543 0.91949 0.94926 0.88529 0.87580 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.48 71.98 0.68 -1.34 16 2 C 0.13 1.58 3.18 44.99 0.14 1.72 16 3 C -0.15 -0.78 9.38 71.98 0.68 -0.11 16 4 N -0.72 -7.68 5.08 -442.52 -2.25 -9.93 16 5 C 0.51 9.04 7.49 87.66 0.66 9.70 16 6 O -0.57 -16.13 14.01 -3.03 -0.04 -16.18 16 7 C 0.04 0.50 5.45 85.56 0.47 0.97 16 8 N -0.54 -10.68 4.45 -900.26 -4.00 -14.69 16 9 C 0.07 1.61 5.26 86.31 0.45 2.07 16 10 C 0.06 1.64 5.41 86.31 0.47 2.10 16 11 N -0.54 -13.99 4.71 -895.71 -4.22 -18.21 16 12 C 0.07 2.01 4.96 86.30 0.43 2.44 16 13 C -0.08 -2.81 5.15 30.60 0.16 -2.65 16 14 C -0.09 -3.66 5.67 71.98 0.41 -3.25 16 15 S -0.20 -10.99 21.44 -56.49 -1.21 -12.20 16 16 C -0.54 -32.14 9.50 67.95 0.65 -31.49 16 17 H 0.07 4.16 7.80 -2.91 -0.02 4.14 16 18 C 0.01 0.86 5.49 84.86 0.47 1.33 16 19 N -0.91 -56.04 13.22 21.65 0.29 -55.75 16 20 Si 1.00 44.84 29.55 68.60 2.03 46.87 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 C 0.05 1.08 5.61 86.31 0.48 1.57 16 25 C 0.06 1.01 5.61 86.31 0.48 1.50 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 1.06 7.59 -2.38 -0.02 1.05 16 30 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.42 1.46 8.60 -92.70 -0.80 0.66 16 34 H 0.13 0.88 8.03 -2.39 -0.02 0.86 16 35 H 0.08 0.78 8.12 -2.39 -0.02 0.76 16 36 H 0.04 0.90 8.14 -2.38 -0.02 0.89 16 37 H 0.08 2.19 5.85 -2.39 -0.01 2.18 16 38 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 2.15 6.34 -2.38 -0.02 2.14 16 40 H 0.03 0.89 8.12 -2.38 -0.02 0.87 16 41 H 0.09 2.22 8.03 -2.39 -0.02 2.20 16 42 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.06 2.07 6.49 -2.39 -0.02 2.06 16 44 H 0.06 2.46 8.14 -2.40 -0.02 2.44 16 45 H 0.07 2.71 8.14 -2.40 -0.02 2.69 16 46 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 47 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.10 1.61 8.07 -2.39 -0.02 1.60 16 49 H 0.11 1.11 8.07 -2.39 -0.02 1.09 16 50 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -77.57 406.67 -2.69 -80.26 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.10 Total: 15.28 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 6.62 Total: -15.45 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -10.18 Total: -98.58 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.04 Total: -16.18 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: -10.99 SS G_CDS: -1.21 Total: -12.20 kcal Total: -77.57 -2.69 -80.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981337.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.322 kcal (2) G-P(sol) polarization free energy of solvation -77.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds