Wall clock time and date at job start Tue Mar 31 2020 05:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00140 * 2 1 4 4 H 1.48501 * 109.47212 * 270.00218 * 3 2 1 5 5 H 1.48507 * 109.47054 * 30.00221 * 3 2 1 6 6 H 1.48501 * 109.47302 * 150.00109 * 3 2 1 7 7 C 1.38795 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99866 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00188 * 179.97438 * 7 2 1 10 10 C 1.81007 * 99.99882 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46877 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46890 * 180.02562 * 11 10 9 13 13 S 1.81003 * 109.46857 * 180.02562 * 12 11 10 14 14 C 1.76199 * 99.99916 * 179.97438 * 13 12 11 15 15 N 1.31028 * 125.07918 * 0.02677 * 14 13 12 16 16 C 1.35955 * 109.63149 * 179.97438 * 15 14 13 17 17 C 1.39738 * 133.31662 * 180.02562 * 16 15 14 18 18 C 1.37852 * 119.78811 * 179.97438 * 17 16 15 19 19 F 1.35106 * 119.78421 * 180.02562 * 18 17 16 20 20 C 1.39065 * 120.42999 * 0.02562 * 18 17 16 21 21 F 1.35093 * 119.82513 * 179.97438 * 20 18 17 22 22 C 1.38116 * 120.35660 * 359.97438 * 20 18 17 23 23 C 1.38685 * 119.86547 * 0.02562 * 22 20 18 24 24 N 1.36655 * 125.07950 * 180.27823 * 14 13 12 25 25 H 0.96998 * 126.39342 * 0.09848 * 24 14 13 26 26 H 0.97003 * 120.00152 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47108 * 60.00391 * 10 9 7 28 28 H 1.08995 * 109.47238 * 300.00486 * 10 9 7 29 29 H 1.09001 * 109.47116 * 60.00170 * 11 10 9 30 30 H 1.09003 * 109.47248 * 299.99888 * 11 10 9 31 31 H 1.09001 * 109.47431 * 59.99959 * 12 11 10 32 32 H 1.09005 * 109.47251 * 299.99626 * 12 11 10 33 33 H 1.08001 * 120.10640 * 359.97153 * 17 16 15 34 34 H 1.07996 * 120.06947 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4702 -2.1373 -0.0014 9 16 3.7722 -1.2020 -0.0012 10 6 4.0865 -2.9846 -0.0009 11 6 5.5957 -3.2364 -0.0008 12 6 5.8613 -4.7431 -0.0012 13 16 7.6466 -5.0409 -0.0003 14 6 7.6629 -6.8029 -0.0002 15 7 6.5976 -7.5657 -0.0012 16 6 6.9718 -8.8728 -0.0013 17 6 6.2582 -10.0742 -0.0026 18 6 6.9372 -11.2740 -0.0029 19 9 6.2472 -12.4356 -0.0047 20 6 8.3276 -11.2964 -0.0013 21 9 8.9805 -12.4791 -0.0011 22 6 9.0448 -10.1161 0.0000 23 6 8.3756 -8.9014 0.0003 24 7 8.7884 -7.5779 0.0058 25 1 9.7052 -7.2612 0.0121 26 1 -0.4850 0.8401 0.0004 27 1 3.6433 -3.4318 -0.8907 28 1 3.6438 -3.4314 0.8892 29 1 6.0385 -2.7892 0.8891 30 1 6.0387 -2.7895 -0.8909 31 1 5.4185 -5.1899 -0.8914 32 1 5.4183 -5.1904 0.8886 33 1 5.1783 -10.0629 -0.0034 34 1 10.1245 -10.1389 0.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075076149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:43 Heat of formation + Delta-G solvation = -34.884357 kcal Electronic energy + Delta-G solvation = -21136.478352 eV Core-core repulsion = 17344.003905 eV Total energy + Delta-G solvation = -3792.474448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 330.037 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.83421 -48.90225 -42.50876 -37.28760 -34.66773 -33.71429 -32.47820 -30.46430 -29.58994 -27.30007 -25.67462 -24.47312 -23.12857 -22.28246 -21.59260 -19.44718 -18.58707 -17.98729 -17.54794 -16.87153 -16.79398 -16.25026 -15.84540 -15.49942 -15.32350 -15.31739 -15.07865 -14.75666 -14.64497 -14.19309 -13.94843 -13.49716 -12.92638 -12.89421 -12.48761 -12.22130 -11.98522 -11.87421 -11.39369 -11.26814 -11.10802 -10.87296 -10.78044 -10.64054 -10.27341 -9.85283 -9.38226 -9.04804 -8.90172 -8.64601 -7.91260 -7.01121 -6.31957 -4.05639 0.05657 0.58193 0.60497 1.70915 1.94966 2.41104 2.95252 2.99364 3.26865 3.33745 3.41243 3.51877 3.69991 3.80237 4.27385 4.35645 4.48052 4.60352 4.70691 4.87613 4.89456 4.98326 5.06829 5.14841 5.31619 5.33073 5.40695 5.56139 5.71415 5.77810 6.00516 6.15054 6.23824 6.47031 6.50818 7.07816 7.91601 8.41193 9.13335 10.77399 Molecular weight = 330.04amu Principal moments of inertia in cm(-1) A = 0.028308 B = 0.001920 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.894785 B =14576.806111 C =15539.949786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.503 4.503 8 H 0.089 0.911 9 S -0.211 6.211 10 C -0.078 4.078 11 C -0.090 4.090 12 C -0.092 4.092 13 S 0.000 6.000 14 C 0.283 3.717 15 N -0.485 5.485 16 C 0.080 3.920 17 C -0.072 4.072 18 C 0.067 3.933 19 F -0.124 7.124 20 C 0.084 3.916 21 F -0.124 7.124 22 C -0.114 4.114 23 C 0.067 3.933 24 N -0.581 5.581 25 H 0.431 0.569 26 H 0.271 0.729 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.157 0.843 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.531 -19.425 0.091 28.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.117 4.117 3 Si 0.686 3.314 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.162 1.162 7 C -0.651 4.651 8 H 0.107 0.893 9 S 0.017 5.983 10 C -0.229 4.229 11 C -0.131 4.131 12 C -0.242 4.242 13 S 0.233 5.767 14 C -0.092 4.092 15 N -0.209 5.209 16 C -0.042 4.042 17 C -0.093 4.093 18 C 0.045 3.955 19 F -0.103 7.103 20 C 0.062 3.938 21 F -0.102 7.102 22 C -0.136 4.136 23 C -0.046 4.046 24 N -0.195 5.195 25 H 0.272 0.728 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.174 0.826 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 22.098 -17.453 0.095 28.160 hybrid contribution -0.473 -1.712 -0.031 1.777 sum 21.626 -19.166 0.064 28.896 Atomic orbital electron populations 1.69934 1.05913 1.27764 1.48034 1.24798 0.94524 0.99029 0.93333 0.86675 0.81717 0.83247 0.79717 1.19344 1.20066 1.16177 1.22102 0.86851 0.97500 1.58629 0.89258 1.84159 1.12003 1.04610 1.97576 1.23014 0.95697 0.99750 1.04403 1.21175 0.96808 0.90987 1.04119 1.23795 0.90783 1.01583 1.08042 1.85847 1.13479 0.86116 1.91300 1.25744 0.83329 0.99948 1.00187 1.71127 1.26000 0.99834 1.23986 1.18671 0.89697 0.91932 1.03883 1.20010 1.01357 0.87265 1.00702 1.17084 0.87759 0.82450 1.08234 1.91555 1.78956 1.45574 1.94206 1.16994 0.88251 0.81574 1.07015 1.91546 1.80909 1.43717 1.94032 1.19532 1.00620 0.87487 1.05998 1.18435 0.94795 0.85011 1.06318 1.42915 1.09485 1.03569 1.63543 0.72846 0.91915 0.90893 0.90856 0.90256 0.90275 0.87959 0.87967 0.82553 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.29 13.97 55.49 0.78 -25.51 16 2 C 0.09 2.63 5.50 -17.43 -0.10 2.53 16 3 Si 0.86 21.01 27.74 -169.99 -4.71 16.30 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.24 -5.64 6.74 56.52 0.38 -5.26 16 7 C -0.50 -14.21 10.04 30.94 0.31 -13.90 16 8 H 0.09 2.69 8.03 -52.48 -0.42 2.27 16 9 S -0.21 -4.89 19.41 -107.50 -2.09 -6.98 16 10 C -0.08 -1.39 5.67 37.16 0.21 -1.18 16 11 C -0.09 -1.20 5.22 -26.73 -0.14 -1.34 16 12 C -0.09 -1.02 5.15 37.16 0.19 -0.83 16 13 S 0.00 0.00 22.31 -107.50 -2.40 -2.40 16 14 C 0.28 2.87 8.20 -88.44 -0.73 2.14 16 15 N -0.48 -5.87 10.57 -10.89 -0.12 -5.98 16 16 C 0.08 0.87 7.22 -84.66 -0.61 0.26 16 17 C -0.07 -0.70 10.07 -39.16 -0.39 -1.09 16 18 C 0.07 0.64 7.29 -39.42 -0.29 0.35 16 19 F -0.12 -1.28 17.16 2.25 0.04 -1.24 16 20 C 0.08 0.73 7.30 -39.32 -0.29 0.45 16 21 F -0.12 -1.15 17.17 2.25 0.04 -1.11 16 22 C -0.11 -0.83 10.03 -39.46 -0.40 -1.23 16 23 C 0.07 0.59 7.29 -83.80 -0.61 -0.02 16 24 N -0.58 -4.46 6.28 -10.55 -0.07 -4.53 16 25 H 0.43 1.85 8.96 -40.82 -0.37 1.48 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 27 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 28 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16 32 H 0.10 1.17 8.14 -51.91 -0.42 0.75 16 33 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 334.82 15.07 5.05 5.05 Total: -1.00 -31.56 334.82 -9.64 -41.20 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -3.32 Total: -0.94 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -2.83 Total: -13.85 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.59 Total: -36.02 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.08 Total: -2.35 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.71 Total: 16.30 kcal Atomic # 16 Polarization: -4.90 SS G_CDS: -4.49 Total: -9.38 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.56 -9.64 -41.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075076149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.318 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds