Wall clock time and date at job start Tue Mar 31 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.40126 * 120.51024 * 283.77120 * 3 2 1 5 5 C 1.38063 * 118.46820 * 180.02562 * 4 3 2 6 6 C 1.39521 * 119.43114 * 0.02562 * 5 4 3 7 7 C 1.48196 * 119.49844 * 179.97438 * 6 5 4 8 8 C 1.39443 * 120.11765 * 179.97438 * 7 6 5 9 9 C 1.37958 * 119.88472 * 180.02562 * 8 7 6 10 10 C 1.38474 * 120.11654 * 0.02562 * 9 8 7 11 11 Cl 1.73599 * 119.88164 * 179.97438 * 10 9 8 12 12 C 1.38467 * 120.23277 * 0.27559 * 10 9 8 13 13 C 1.37968 * 120.11612 * 359.44499 * 12 10 9 14 14 N 1.32712 * 121.00260 * 0.24930 * 6 5 4 15 15 C 1.32299 * 121.66239 * 359.47915 * 14 6 5 16 16 S 1.76200 * 119.77243 * 180.26592 * 15 14 6 17 17 C 1.80997 * 99.99916 * 0.25599 * 16 15 14 18 18 C 1.50701 * 109.47214 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00029 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99911 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00202 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99682 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46701 * 60.00489 * 22 20 18 24 24 H 1.48499 * 109.46852 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47444 * 300.00108 * 22 20 18 26 26 H 1.07999 * 120.76320 * 0.02562 * 4 3 2 27 27 H 1.07996 * 120.28641 * 179.97438 * 5 4 3 28 28 H 1.08003 * 120.06045 * 0.04725 * 8 7 6 29 29 H 1.08002 * 119.94231 * 179.97438 * 9 8 7 30 30 H 1.07996 * 119.94560 * 179.69986 * 12 10 9 31 31 H 1.07998 * 120.05805 * 180.27440 * 13 12 10 32 32 H 1.09006 * 109.47043 * 300.00181 * 17 16 15 33 33 H 1.08995 * 109.47314 * 59.99510 * 17 16 15 34 34 H 0.97000 * 119.99657 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2796 -0.2864 1.1725 5 6 4.6593 -0.2736 1.1249 6 6 5.3010 0.0227 -0.0781 7 6 6.7820 0.0374 -0.1308 8 6 7.4367 0.3313 -1.3264 9 6 8.8155 0.3432 -1.3701 10 6 9.5493 0.0635 -0.2296 11 17 11.2841 0.0795 -0.2917 12 6 8.9042 -0.2351 0.9587 13 6 7.5257 -0.2440 1.0148 14 7 4.6054 0.2967 -1.1745 15 6 3.2824 0.2910 -1.1771 16 16 2.4088 0.6554 -2.6632 17 6 3.8009 0.9325 -3.7863 18 6 3.2793 1.2701 -5.1592 19 1 2.2149 1.3128 -5.3371 20 6 4.1609 1.5243 -6.1883 21 7 5.4571 1.4727 -5.9717 22 14 3.5143 1.9420 -7.8904 23 1 2.6848 3.1715 -7.8166 24 1 4.6565 2.1707 -8.8114 25 1 2.6877 0.8167 -8.3959 26 1 2.7606 -0.5125 2.0923 27 1 5.2369 -0.4901 2.0113 28 1 6.8653 0.5496 -2.2165 29 1 9.3235 0.5703 -2.2957 30 1 9.4811 -0.4573 1.8442 31 1 7.0235 -0.4727 1.9432 32 1 4.4081 1.7584 -3.4154 33 1 4.4095 0.0299 -3.8401 34 1 6.0773 1.6520 -6.6956 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082086923.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:58 Heat of formation + Delta-G solvation = 72.572792 kcal Electronic energy + Delta-G solvation = -21241.139837 eV Core-core repulsion = 17869.677810 eV Total energy + Delta-G solvation = -3371.462027 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 330.029 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.42680 -38.94771 -36.69274 -36.34079 -33.29260 -32.93903 -32.62751 -31.13280 -29.54602 -28.66528 -25.01367 -24.32267 -23.16792 -22.33207 -21.70685 -19.11416 -17.96665 -17.11275 -16.77883 -16.31533 -15.42945 -15.08880 -14.71021 -14.70630 -14.66234 -13.84802 -13.67844 -13.59929 -13.41804 -13.06398 -13.01249 -12.72147 -12.41983 -12.41078 -12.19815 -11.82849 -11.65132 -11.64792 -10.94199 -10.92686 -10.89307 -10.54713 -10.09547 -9.84661 -9.73832 -9.45932 -9.32464 -9.16315 -8.68909 -8.40196 -7.06130 -6.27409 -4.33987 0.11988 1.13949 1.20975 1.29761 1.97175 2.03514 2.73867 2.99213 3.23209 3.26572 3.27633 3.37471 3.55287 3.84066 3.98795 4.20880 4.28529 4.51092 4.68935 4.76715 4.90796 5.07427 5.10204 5.16964 5.25596 5.36513 5.51840 5.70010 5.84958 5.91439 6.04338 6.14327 6.40022 6.42956 6.68315 7.02852 7.12569 7.56883 7.62822 7.79518 7.87550 8.66460 9.30128 10.83029 Molecular weight = 330.03amu Principal moments of inertia in cm(-1) A = 0.007954 B = 0.004279 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.356398 B = 6541.867591 C =10046.077605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.266 3.734 3 C -0.089 4.089 4 C -0.006 4.006 5 C -0.193 4.193 6 C 0.215 3.785 7 C -0.051 4.051 8 C -0.053 4.053 9 C -0.113 4.113 10 C -0.023 4.023 11 Cl -0.074 7.074 12 C -0.121 4.121 13 C -0.085 4.085 14 N -0.470 5.470 15 C 0.182 3.818 16 S -0.081 6.081 17 C 0.076 3.924 18 C -0.529 4.529 19 H 0.065 0.935 20 C 0.073 3.927 21 N -0.884 5.884 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.146 0.854 27 H 0.144 0.856 28 H 0.156 0.844 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.419 -4.037 16.372 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.050 4.050 3 C -0.104 4.104 4 C -0.034 4.034 5 C -0.217 4.217 6 C 0.072 3.928 7 C -0.052 4.052 8 C -0.072 4.072 9 C -0.132 4.132 10 C -0.050 4.050 11 Cl -0.045 7.045 12 C -0.139 4.139 13 C -0.104 4.104 14 N -0.182 5.182 15 C -0.070 4.070 16 S 0.167 5.833 17 C -0.071 4.071 18 C -0.569 4.569 19 H 0.083 0.917 20 C -0.132 4.132 21 N -0.521 5.521 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.199 1.199 26 H 0.163 0.837 27 H 0.162 0.838 28 H 0.174 0.826 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.147 -3.709 15.063 16.687 hybrid contribution 1.325 -0.012 0.044 1.326 sum 7.472 -3.721 15.107 17.260 Atomic orbital electron populations 1.81183 1.11646 1.08835 1.07110 1.25145 0.92108 0.93835 0.93914 1.16571 0.85599 1.12818 0.95384 1.21366 0.93687 0.92056 0.96326 1.21755 0.94345 1.06601 0.99043 1.19918 0.92684 0.91231 0.88928 1.18612 0.90049 1.02198 0.94358 1.21616 0.93354 0.93639 0.98618 1.21162 0.93946 1.00400 0.97687 1.21143 0.84399 1.03570 0.95861 1.98371 1.10477 1.96935 1.98745 1.20887 0.94260 1.01942 0.96851 1.21166 0.92917 0.98472 0.97866 1.68307 1.05627 1.16122 1.28192 1.23776 0.92156 0.93400 0.97712 1.86087 1.17510 1.80684 0.98985 1.21321 0.90465 1.01815 0.93513 1.20629 0.93599 1.50280 0.92367 0.91680 1.24889 0.94672 0.94548 0.99088 1.69931 1.01279 1.47577 1.33263 0.86445 0.78483 0.79243 0.82713 1.19870 1.20908 1.19863 0.83671 0.83811 0.82609 0.84276 0.84692 0.84481 0.92781 0.92800 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.09 18.54 41.84 0.78 -6.32 16 2 C 0.27 4.19 14.30 -22.47 -0.32 3.87 16 3 C -0.09 -1.31 5.78 -106.33 -0.61 -1.92 16 4 C -0.01 -0.06 9.89 -38.94 -0.38 -0.45 16 5 C -0.19 -1.98 9.43 -39.17 -0.37 -2.35 16 6 C 0.21 2.94 6.73 -82.92 -0.56 2.38 16 7 C -0.05 -0.64 5.88 -104.91 -0.62 -1.26 16 8 C -0.05 -0.75 9.57 -39.24 -0.38 -1.12 16 9 C -0.11 -1.41 9.81 -39.60 -0.39 -1.79 16 10 C -0.02 -0.25 6.32 -39.41 -0.25 -0.50 16 11 Cl -0.07 -0.76 28.95 -51.86 -1.50 -2.26 16 12 C -0.12 -1.13 9.81 -39.60 -0.39 -1.51 16 13 C -0.08 -0.80 9.41 -39.23 -0.37 -1.17 16 14 N -0.47 -8.15 8.16 -8.25 -0.07 -8.21 16 15 C 0.18 3.21 7.01 -16.41 -0.12 3.10 16 16 S -0.08 -1.68 20.96 -107.50 -2.25 -3.93 16 17 C 0.08 1.86 4.59 36.01 0.17 2.02 16 18 C -0.53 -14.16 9.13 -34.44 -0.31 -14.48 16 19 H 0.07 1.73 7.71 -52.49 -0.40 1.33 16 20 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 21 N -0.88 -24.30 13.29 55.43 0.74 -23.56 16 22 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 27 H 0.14 0.92 6.15 -52.49 -0.32 0.60 16 28 H 0.16 2.60 7.52 -52.48 -0.39 2.20 16 29 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.14 0.85 6.15 -52.49 -0.32 0.53 16 32 H 0.05 1.39 8.12 -51.91 -0.42 0.97 16 33 H 0.05 1.39 8.12 -51.92 -0.42 0.96 16 34 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 340.15 15.07 5.13 5.13 Total: -1.00 -28.95 340.15 -9.89 -38.84 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -2.69 Total: -1.95 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -5.00 Total: -13.31 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 1.44 Total: -38.09 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.25 Total: -3.93 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.95 -9.89 -38.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082086923.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.417 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds