Wall clock time and date at job start Tue Mar 31 2020 05:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33120 * 119.99956 * 2 1 4 4 C 1.46951 * 120.00357 * 354.06857 * 3 2 1 5 5 O 1.21656 * 119.99370 * 353.54816 * 4 3 2 6 6 N 1.34771 * 120.00230 * 173.55063 * 4 3 2 7 7 C 1.36821 * 119.99612 * 179.97438 * 6 4 3 8 8 H 1.08001 * 119.99784 * 224.27768 * 7 6 4 9 9 C 1.39074 * 120.00020 * 44.28808 * 7 6 4 10 10 N 1.31348 * 119.99756 * 192.42016 * 9 7 6 11 11 Si 1.86794 * 119.99984 * 12.41939 * 9 7 6 12 12 H 1.48503 * 109.47320 * 264.43781 * 11 9 7 13 13 H 1.48500 * 109.47353 * 24.43754 * 11 9 7 14 14 H 1.48500 * 109.47191 * 144.43475 * 11 9 7 15 15 C 1.46498 * 120.00307 * 0.02562 * 6 4 3 16 16 C 1.53000 * 117.49881 * 184.43284 * 15 6 4 17 17 C 1.53000 * 117.50368 * 115.76870 * 15 6 4 18 18 C 1.50706 * 120.00127 * 180.02562 * 2 1 3 19 19 C 1.53001 * 109.47240 * 179.97438 * 18 2 1 20 20 C 1.52997 * 109.46923 * 179.97438 * 19 18 2 21 21 C 1.52996 * 109.47223 * 60.00260 * 20 19 18 22 22 C 1.53001 * 109.46959 * 299.99718 * 21 20 19 23 23 C 1.52999 * 109.47109 * 299.99771 * 22 21 20 24 24 C 1.53008 * 109.46912 * 59.99967 * 23 22 21 25 25 C 1.52992 * 109.47235 * 299.99750 * 24 23 22 26 26 C 1.53005 * 109.46972 * 60.00175 * 24 23 22 27 27 C 1.52996 * 109.47288 * 60.00027 * 22 21 20 28 28 H 1.08997 * 109.47464 * 85.12116 * 1 2 3 29 29 H 1.09003 * 109.47001 * 205.11892 * 1 2 3 30 30 H 1.08998 * 109.47224 * 325.11570 * 1 2 3 31 31 H 1.08010 * 119.99907 * 174.06846 * 3 2 1 32 32 H 0.96998 * 119.99519 * 180.02562 * 10 9 7 33 33 H 1.09001 * 115.54416 * 330.09812 * 15 6 4 34 34 H 1.08999 * 117.49976 * 359.97438 * 16 15 6 35 35 H 1.09005 * 117.49593 * 145.01698 * 16 15 6 36 36 H 1.08993 * 117.49776 * 214.98092 * 17 15 6 37 37 H 1.09003 * 117.49435 * 359.97438 * 17 15 6 38 38 H 1.09002 * 109.47091 * 300.00185 * 19 18 2 39 39 H 1.09008 * 109.46911 * 59.99608 * 19 18 2 40 40 H 1.09004 * 109.46902 * 180.02562 * 20 19 18 41 41 H 1.09005 * 109.47138 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.47170 * 59.99903 * 21 20 19 43 43 H 1.08995 * 109.47223 * 180.02562 * 22 21 20 44 44 H 1.08996 * 109.47595 * 300.00129 * 23 22 21 45 45 H 1.09001 * 109.47235 * 180.02562 * 23 22 21 46 46 H 1.09002 * 109.47059 * 179.97438 * 24 23 22 47 47 H 1.09000 * 109.46884 * 179.97438 * 25 24 23 48 48 H 1.08992 * 109.47569 * 300.00404 * 25 24 23 49 49 H 1.08995 * 109.47151 * 180.02562 * 26 24 23 50 50 H 1.09004 * 109.47299 * 59.99366 * 26 24 23 51 51 H 1.08992 * 109.47428 * 179.97438 * 27 22 21 52 52 H 1.09002 * 109.47409 * 59.99760 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1529 0.0000 4 6 1.4438 2.4221 -0.1315 5 8 0.2485 2.4165 -0.3578 6 7 2.0995 3.5923 -0.0015 7 6 1.4210 4.7740 -0.1245 8 1 1.8428 5.5810 -0.7052 9 6 0.1882 4.9361 0.4985 10 7 -0.5739 5.9605 0.1901 11 14 -0.3839 3.6969 1.7738 12 1 -1.2566 2.6857 1.1248 13 1 0.7957 3.0218 2.3721 14 1 -1.1456 4.3980 2.8384 15 6 3.5391 3.5991 0.2704 16 6 4.2063 4.9549 0.5103 17 6 4.4569 4.1987 -0.7969 18 6 2.2605 -1.3051 -0.0006 19 6 3.7648 -1.0256 -0.0011 20 6 4.5297 -2.3506 -0.0011 21 6 4.1598 -3.1531 -1.2500 22 6 2.6555 -3.4327 -1.2495 23 6 2.2863 -4.2348 0.0000 24 6 2.6564 -3.4322 1.2490 25 6 4.1605 -3.1527 1.2485 26 6 1.8913 -2.1072 1.2490 27 6 1.8905 -2.1077 -1.2495 28 1 -0.3634 0.0874 -1.0239 29 1 -0.3633 -0.9305 0.4363 30 1 -0.3633 0.8430 0.5877 31 1 3.2483 1.1553 0.0967 32 1 -1.4335 6.0737 0.6249 33 1 3.9146 2.7462 0.8358 34 1 3.5743 5.8418 0.4654 35 1 5.0212 4.9939 1.2332 36 1 5.4364 3.7405 -0.9334 37 1 3.9896 4.5877 -1.7016 38 1 4.0278 -0.4537 -0.8911 39 1 4.0284 -0.4541 0.8889 40 1 5.6014 -2.1514 -0.0010 41 1 4.7051 -4.0969 -1.2502 42 1 4.4229 -2.5817 -2.1402 43 1 2.3920 -4.0048 -2.1390 44 1 2.8313 -5.1787 0.0001 45 1 1.2147 -4.4343 0.0002 46 1 2.3929 -4.0034 2.1392 47 1 4.4240 -2.5805 2.1381 48 1 4.7055 -4.0965 1.2485 49 1 2.1552 -1.5352 2.1385 50 1 0.8196 -2.3063 1.2493 51 1 0.8189 -2.3069 -1.2496 52 1 2.1535 -1.5362 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083812921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:29 Heat of formation + Delta-G solvation = -1.151337 kcal Electronic energy + Delta-G solvation = -30529.611115 eV Core-core repulsion = 26880.248423 eV Total energy + Delta-G solvation = -3649.362692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66157 -39.18280 -36.72619 -35.30102 -32.92139 -32.79745 -32.70598 -31.44427 -30.52877 -27.87721 -25.97955 -25.83957 -24.71882 -22.58354 -21.82629 -21.58085 -21.51626 -21.13424 -19.75504 -18.04413 -17.55858 -16.73649 -16.02081 -15.47797 -14.71854 -14.62346 -14.51810 -14.45592 -14.35393 -13.89385 -13.68435 -13.47937 -13.44890 -13.39297 -13.10103 -12.64023 -12.62246 -12.50183 -12.39979 -12.10819 -11.68953 -11.46881 -11.16915 -11.07227 -11.01362 -10.93075 -10.90873 -10.85383 -10.84579 -10.60954 -10.27490 -10.09706 -9.88771 -9.80275 -9.78498 -9.70576 -9.62993 -8.70647 -8.33999 -8.10455 -7.41803 -6.15395 -3.95949 2.05087 3.47195 3.52887 3.69074 4.17109 4.31454 4.39430 4.43925 4.50487 4.55464 4.73606 4.94688 5.03538 5.08306 5.10958 5.13755 5.15772 5.24766 5.27931 5.28696 5.30215 5.42572 5.50508 5.55443 5.59457 5.61813 5.67425 5.67541 5.71345 5.85295 5.88849 5.89496 5.96226 5.98851 6.00424 6.05194 6.08397 6.12540 6.15778 6.16196 6.31855 6.33492 6.35658 6.37228 6.44626 6.50551 6.64547 6.68614 6.88127 7.09394 7.16574 7.86821 8.04356 8.81019 8.96067 9.44198 9.87179 10.88258 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.004239 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.407753 B = 6603.878707 C = 7474.481127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.058 4.058 3 C -0.204 4.204 4 C 0.480 3.520 5 O -0.542 6.542 6 N -0.431 5.431 7 C -0.340 4.340 8 H 0.093 0.907 9 C 0.085 3.915 10 N -0.872 5.872 11 Si 0.932 3.068 12 H -0.256 1.256 13 H -0.285 1.285 14 H -0.319 1.319 15 C 0.067 3.933 16 C -0.173 4.173 17 C -0.198 4.198 18 C -0.016 4.016 19 C -0.106 4.106 20 C -0.085 4.085 21 C -0.108 4.108 22 C -0.085 4.085 23 C -0.107 4.107 24 C -0.085 4.085 25 C -0.108 4.108 26 C -0.101 4.101 27 C -0.097 4.097 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.272 0.728 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.063 0.937 50 H 0.066 0.934 51 H 0.065 0.935 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.035 -19.715 0.993 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.061 4.061 3 C -0.225 4.225 4 C 0.274 3.726 5 O -0.429 6.429 6 N -0.150 5.150 7 C -0.466 4.466 8 H 0.111 0.889 9 C -0.123 4.123 10 N -0.507 5.507 11 Si 0.766 3.234 12 H -0.182 1.182 13 H -0.211 1.211 14 H -0.250 1.250 15 C -0.039 4.039 16 C -0.211 4.211 17 C -0.237 4.237 18 C -0.016 4.016 19 C -0.143 4.143 20 C -0.104 4.104 21 C -0.145 4.145 22 C -0.104 4.104 23 C -0.145 4.145 24 C -0.104 4.104 25 C -0.145 4.145 26 C -0.138 4.138 27 C -0.134 4.134 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.138 0.862 32 H 0.082 0.918 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.084 0.916 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.281 -19.561 0.881 22.116 hybrid contribution -0.106 -0.331 0.603 0.695 sum 10.175 -19.891 1.484 22.392 Atomic orbital electron populations 1.21117 0.91376 1.01685 1.03300 1.22214 0.96224 0.92956 0.94683 1.22802 0.99968 0.93011 1.06702 1.18407 0.87843 0.84023 0.82291 1.90527 1.14479 1.86159 1.51689 1.43029 1.04775 1.05592 1.61645 1.18712 1.02915 0.91871 1.33098 0.88933 1.25395 0.95443 0.95647 0.95834 1.69677 1.10527 1.30092 1.40381 0.85977 0.79143 0.80795 0.77534 1.18222 1.21079 1.24974 1.21747 0.83512 0.97207 1.01458 1.23173 1.02118 0.97292 0.98475 1.23287 1.00153 1.05713 0.94577 1.19472 0.94200 0.92297 0.95600 1.21683 0.93843 0.96465 1.02295 1.21062 0.99165 0.95242 0.94909 1.21540 0.95598 0.99615 0.97747 1.21055 0.95304 0.96237 0.97764 1.21540 1.00837 0.97716 0.94380 1.21056 0.95302 0.96217 0.97783 1.21542 0.95598 0.99631 0.97741 1.21573 0.99999 0.95090 0.97145 1.21502 0.99954 0.94933 0.97044 0.91065 0.93891 0.88938 0.86161 0.91823 0.87417 0.86990 0.89488 0.89533 0.88783 0.91353 0.91630 0.91344 0.92291 0.91971 0.91374 0.92280 0.92059 0.91425 0.92036 0.92270 0.91836 0.91559 0.91631 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 7.85 36.00 0.28 -1.89 16 2 C -0.06 -0.98 4.91 -101.13 -0.50 -1.48 16 3 C -0.20 -3.88 8.19 -37.84 -0.31 -4.19 16 4 C 0.48 11.66 5.50 -12.73 -0.07 11.59 16 5 O -0.54 -14.81 8.68 5.23 0.05 -14.77 16 6 N -0.43 -10.58 2.51 -109.11 -0.27 -10.85 16 7 C -0.34 -9.64 8.40 -15.02 -0.13 -9.77 16 8 H 0.09 2.75 7.47 -52.49 -0.39 2.36 16 9 C 0.09 2.54 5.03 -17.45 -0.09 2.45 16 10 N -0.87 -26.89 13.95 55.50 0.77 -26.11 16 11 Si 0.93 25.31 23.99 -169.99 -4.08 21.23 16 12 H -0.26 -7.10 5.67 56.52 0.32 -6.78 16 13 H -0.28 -7.56 6.95 56.52 0.39 -7.17 16 14 H -0.32 -8.55 7.11 56.52 0.40 -8.15 16 15 C 0.07 1.29 5.75 -67.93 -0.39 0.90 16 16 C -0.17 -3.06 9.80 -26.69 -0.26 -3.32 16 17 C -0.20 -3.34 10.34 -26.69 -0.28 -3.62 16 18 C -0.02 -0.20 0.61 -155.65 -0.10 -0.29 16 19 C -0.11 -1.23 3.13 -26.73 -0.08 -1.31 16 20 C -0.09 -0.82 3.19 -90.62 -0.29 -1.11 16 21 C -0.11 -0.98 5.19 -26.73 -0.14 -1.12 16 22 C -0.09 -0.81 3.19 -90.62 -0.29 -1.10 16 23 C -0.11 -0.96 5.19 -26.73 -0.14 -1.10 16 24 C -0.09 -0.81 3.19 -90.62 -0.29 -1.10 16 25 C -0.11 -0.98 5.19 -26.73 -0.14 -1.11 16 26 C -0.10 -1.18 4.30 -26.73 -0.12 -1.29 16 27 C -0.10 -1.13 4.32 -26.73 -0.12 -1.25 16 28 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 29 H 0.04 0.65 6.65 -51.93 -0.35 0.31 16 30 H 0.09 2.06 4.86 -51.93 -0.25 1.81 16 31 H 0.12 1.97 4.11 -52.48 -0.22 1.75 16 32 H 0.27 7.92 8.31 -40.82 -0.34 7.58 16 33 H 0.11 1.81 6.60 -51.93 -0.34 1.47 16 34 H 0.11 2.28 6.76 -51.93 -0.35 1.93 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.07 0.83 7.59 -51.93 -0.39 0.44 16 39 H 0.07 0.78 7.41 -51.92 -0.38 0.40 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.07 0.79 6.80 -51.93 -0.35 0.44 16 51 H 0.06 0.78 7.76 -51.93 -0.40 0.38 16 52 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -32.19 368.55 -10.41 -42.60 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -9.00 Total: 2.48 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -3.43 Total: -20.13 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.50 Total: -36.97 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.05 Total: -14.77 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -4.08 Total: 21.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.19 -10.41 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083812921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.448 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds