Wall clock time and date at job start Tue Mar 31 2020 05:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33120 * 119.99956 * 2 1 4 4 C 1.46951 * 120.00357 * 354.06857 * 3 2 1 5 5 O 1.21656 * 119.99370 * 353.54816 * 4 3 2 6 6 N 1.34771 * 120.00230 * 173.55063 * 4 3 2 7 7 C 1.36821 * 119.99612 * 179.97438 * 6 4 3 8 8 H 1.08001 * 119.99784 * 224.27768 * 7 6 4 9 9 C 1.39074 * 120.00020 * 44.28808 * 7 6 4 10 10 N 1.31348 * 119.99756 * 192.42016 * 9 7 6 11 11 Si 1.86794 * 119.99984 * 12.41939 * 9 7 6 12 12 H 1.48503 * 109.47320 * 264.43781 * 11 9 7 13 13 H 1.48500 * 109.47353 * 24.43754 * 11 9 7 14 14 H 1.48500 * 109.47191 * 144.43475 * 11 9 7 15 15 C 1.46498 * 120.00307 * 0.02562 * 6 4 3 16 16 C 1.53000 * 117.49881 * 184.43284 * 15 6 4 17 17 C 1.53000 * 117.50368 * 115.76870 * 15 6 4 18 18 C 1.50706 * 120.00127 * 180.02562 * 2 1 3 19 19 C 1.53001 * 109.47240 * 179.97438 * 18 2 1 20 20 C 1.52997 * 109.46923 * 179.97438 * 19 18 2 21 21 C 1.52996 * 109.47223 * 60.00260 * 20 19 18 22 22 C 1.53001 * 109.46959 * 299.99718 * 21 20 19 23 23 C 1.52999 * 109.47109 * 299.99771 * 22 21 20 24 24 C 1.53008 * 109.46912 * 59.99967 * 23 22 21 25 25 C 1.52992 * 109.47235 * 299.99750 * 24 23 22 26 26 C 1.53005 * 109.46972 * 60.00175 * 24 23 22 27 27 C 1.52996 * 109.47288 * 60.00027 * 22 21 20 28 28 H 1.08997 * 109.47464 * 85.12116 * 1 2 3 29 29 H 1.09003 * 109.47001 * 205.11892 * 1 2 3 30 30 H 1.08998 * 109.47224 * 325.11570 * 1 2 3 31 31 H 1.08010 * 119.99907 * 174.06846 * 3 2 1 32 32 H 0.96998 * 119.99519 * 180.02562 * 10 9 7 33 33 H 1.09001 * 115.54416 * 330.09812 * 15 6 4 34 34 H 1.08999 * 117.49976 * 359.97438 * 16 15 6 35 35 H 1.09005 * 117.49593 * 145.01698 * 16 15 6 36 36 H 1.08993 * 117.49776 * 214.98092 * 17 15 6 37 37 H 1.09003 * 117.49435 * 359.97438 * 17 15 6 38 38 H 1.09002 * 109.47091 * 300.00185 * 19 18 2 39 39 H 1.09008 * 109.46911 * 59.99608 * 19 18 2 40 40 H 1.09004 * 109.46902 * 180.02562 * 20 19 18 41 41 H 1.09005 * 109.47138 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.47170 * 59.99903 * 21 20 19 43 43 H 1.08995 * 109.47223 * 180.02562 * 22 21 20 44 44 H 1.08996 * 109.47595 * 300.00129 * 23 22 21 45 45 H 1.09001 * 109.47235 * 180.02562 * 23 22 21 46 46 H 1.09002 * 109.47059 * 179.97438 * 24 23 22 47 47 H 1.09000 * 109.46884 * 179.97438 * 25 24 23 48 48 H 1.08992 * 109.47569 * 300.00404 * 25 24 23 49 49 H 1.08995 * 109.47151 * 180.02562 * 26 24 23 50 50 H 1.09004 * 109.47299 * 59.99366 * 26 24 23 51 51 H 1.08992 * 109.47428 * 179.97438 * 27 22 21 52 52 H 1.09002 * 109.47409 * 59.99760 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1529 0.0000 4 6 1.4438 2.4221 -0.1315 5 8 0.2485 2.4165 -0.3578 6 7 2.0995 3.5923 -0.0015 7 6 1.4210 4.7740 -0.1245 8 1 1.8428 5.5810 -0.7052 9 6 0.1882 4.9361 0.4985 10 7 -0.5739 5.9605 0.1901 11 14 -0.3839 3.6969 1.7738 12 1 -1.2566 2.6857 1.1248 13 1 0.7957 3.0218 2.3721 14 1 -1.1456 4.3980 2.8384 15 6 3.5391 3.5991 0.2704 16 6 4.2063 4.9549 0.5103 17 6 4.4569 4.1987 -0.7969 18 6 2.2605 -1.3051 -0.0006 19 6 3.7648 -1.0256 -0.0011 20 6 4.5297 -2.3506 -0.0011 21 6 4.1598 -3.1531 -1.2500 22 6 2.6555 -3.4327 -1.2495 23 6 2.2863 -4.2348 0.0000 24 6 2.6564 -3.4322 1.2490 25 6 4.1605 -3.1527 1.2485 26 6 1.8913 -2.1072 1.2490 27 6 1.8905 -2.1077 -1.2495 28 1 -0.3634 0.0874 -1.0239 29 1 -0.3633 -0.9305 0.4363 30 1 -0.3633 0.8430 0.5877 31 1 3.2483 1.1553 0.0967 32 1 -1.4335 6.0737 0.6249 33 1 3.9146 2.7462 0.8358 34 1 3.5743 5.8418 0.4654 35 1 5.0212 4.9939 1.2332 36 1 5.4364 3.7405 -0.9334 37 1 3.9896 4.5877 -1.7016 38 1 4.0278 -0.4537 -0.8911 39 1 4.0284 -0.4541 0.8889 40 1 5.6014 -2.1514 -0.0010 41 1 4.7051 -4.0969 -1.2502 42 1 4.4229 -2.5817 -2.1402 43 1 2.3920 -4.0048 -2.1390 44 1 2.8313 -5.1787 0.0001 45 1 1.2147 -4.4343 0.0002 46 1 2.3929 -4.0034 2.1392 47 1 4.4240 -2.5805 2.1381 48 1 4.7055 -4.0965 1.2485 49 1 2.1552 -1.5352 2.1385 50 1 0.8196 -2.3063 1.2493 51 1 0.8189 -2.3069 -1.2496 52 1 2.1535 -1.5362 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083812921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:28 Heat of formation + Delta-G solvation = -18.262669 kcal Electronic energy + Delta-G solvation = -30530.353118 eV Core-core repulsion = 26880.248423 eV Total energy + Delta-G solvation = -3650.104695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.210 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.54044 -40.97764 -38.31525 -36.63325 -34.91612 -33.60334 -33.46400 -33.40316 -31.76085 -29.39850 -27.16632 -26.76874 -26.21215 -24.00893 -23.18725 -22.89532 -22.26868 -22.16198 -21.45263 -19.53621 -18.53439 -18.42225 -17.72098 -17.30997 -16.13239 -15.94333 -15.48759 -15.43975 -15.32818 -15.28405 -15.24215 -14.88364 -14.81160 -14.61397 -14.25099 -14.16757 -13.68470 -13.65754 -13.37862 -13.30828 -13.26248 -13.06666 -12.83315 -12.51509 -12.49896 -12.20112 -12.15351 -11.84076 -11.71528 -11.65831 -11.62790 -11.61478 -11.55228 -11.27701 -10.87094 -10.73341 -10.56337 -10.43670 -10.02779 -9.89041 -9.33384 -8.42949 -6.21856 0.49980 1.24943 1.35542 1.48042 2.27716 2.54652 2.69559 2.94498 3.24256 3.46908 3.57843 3.66405 3.95434 3.96763 4.06449 4.15003 4.22339 4.23975 4.30062 4.34340 4.36011 4.36334 4.39502 4.46407 4.50012 4.53540 4.64333 4.77187 4.78728 4.85354 4.86554 4.89363 4.92247 4.95544 5.07409 5.17112 5.18868 5.19323 5.20623 5.21291 5.22756 5.25125 5.29074 5.32543 5.43437 5.49619 5.55687 5.57798 5.65843 5.68321 5.73254 5.75008 5.89527 6.76381 6.90168 7.32951 7.88811 8.64346 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.004239 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.407753 B = 6603.878707 C = 7474.481127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.032 4.032 3 C -0.226 4.226 4 C 0.474 3.526 5 O -0.583 6.583 6 N -0.451 5.451 7 C -0.330 4.330 8 H 0.065 0.935 9 C 0.037 3.963 10 N -0.917 5.917 11 Si 0.983 3.017 12 H -0.273 1.273 13 H -0.275 1.275 14 H -0.318 1.318 15 C 0.041 3.959 16 C -0.171 4.171 17 C -0.176 4.176 18 C -0.013 4.013 19 C -0.107 4.107 20 C -0.082 4.082 21 C -0.107 4.107 22 C -0.082 4.082 23 C -0.106 4.106 24 C -0.082 4.082 25 C -0.107 4.107 26 C -0.102 4.102 27 C -0.097 4.097 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.152 0.848 32 H 0.272 0.728 33 H 0.142 0.858 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.079 0.921 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.056 0.944 50 H 0.061 0.939 51 H 0.059 0.941 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.377 -23.749 1.791 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.035 4.035 3 C -0.246 4.246 4 C 0.269 3.731 5 O -0.472 6.472 6 N -0.170 5.170 7 C -0.457 4.457 8 H 0.083 0.917 9 C -0.166 4.166 10 N -0.555 5.555 11 Si 0.816 3.184 12 H -0.201 1.201 13 H -0.201 1.201 14 H -0.249 1.249 15 C -0.063 4.063 16 C -0.208 4.208 17 C -0.214 4.214 18 C -0.013 4.013 19 C -0.145 4.145 20 C -0.100 4.100 21 C -0.144 4.144 22 C -0.100 4.100 23 C -0.143 4.143 24 C -0.100 4.100 25 C -0.144 4.144 26 C -0.139 4.139 27 C -0.135 4.135 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.169 0.831 32 H 0.081 0.919 33 H 0.160 0.840 34 H 0.093 0.907 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.075 0.925 50 H 0.079 0.921 51 H 0.077 0.923 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.669 -23.596 1.684 27.321 hybrid contribution -1.138 0.844 0.237 1.437 sum 12.530 -22.752 1.922 26.045 Atomic orbital electron populations 1.21037 0.92809 1.01563 1.02147 1.22661 0.95589 0.94679 0.90523 1.22693 1.01166 0.90721 1.10040 1.19337 0.87657 0.85626 0.80442 1.90497 1.16548 1.86997 1.53117 1.43194 1.07045 1.04337 1.62418 1.18560 1.02921 0.92569 1.31677 0.91719 1.26014 0.96059 0.96883 0.97655 1.69760 1.11278 1.31998 1.42469 0.85148 0.78653 0.78708 0.75847 1.20079 1.20084 1.24874 1.22143 0.80630 0.99417 1.04109 1.23203 1.02403 0.94942 1.00297 1.23314 1.01110 1.04190 0.92782 1.19553 0.94776 0.90042 0.96915 1.21697 0.92782 0.97993 1.01982 1.21059 0.99514 0.93979 0.95462 1.21554 0.95127 1.00374 0.97376 1.21051 0.95463 0.94815 0.98700 1.21550 1.01109 0.98185 0.93495 1.21054 0.95474 0.94830 0.98665 1.21555 0.95119 1.00381 0.97343 1.21589 1.00179 0.96255 0.95903 1.21507 1.00086 0.96114 0.95792 0.92106 0.90831 0.92793 0.83051 0.91863 0.84036 0.90704 0.85376 0.84841 0.91470 0.91907 0.91714 0.90031 0.90510 0.92289 0.90419 0.90476 0.92201 0.90299 0.92097 0.90519 0.92545 0.92079 0.92254 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.40 7.85 71.24 0.56 -3.84 16 2 C -0.03 -1.05 4.91 -17.60 -0.09 -1.14 16 3 C -0.23 -8.33 8.19 23.40 0.19 -8.14 16 4 C 0.47 23.30 5.50 86.53 0.48 23.78 16 5 O -0.58 -33.04 8.68 -4.21 -0.04 -33.07 16 6 N -0.45 -22.42 2.51 -617.36 -1.55 -23.96 16 7 C -0.33 -19.56 8.40 84.12 0.71 -18.85 16 8 H 0.07 4.10 7.47 -2.91 -0.02 4.08 16 9 C 0.04 2.30 5.03 84.97 0.43 2.73 16 10 N -0.92 -59.60 13.95 21.68 0.30 -59.30 16 11 Si 0.98 54.61 23.99 68.60 1.65 56.25 16 12 H -0.27 -15.79 5.67 99.48 0.56 -15.23 16 13 H -0.28 -14.56 6.95 99.48 0.69 -13.86 16 14 H -0.32 -17.19 7.11 99.48 0.71 -16.49 16 15 C 0.04 1.53 5.75 44.99 0.26 1.79 16 16 C -0.17 -5.80 9.80 30.62 0.30 -5.50 16 17 C -0.18 -5.53 10.34 30.62 0.32 -5.22 16 18 C -0.01 -0.30 0.61 -52.92 -0.03 -0.33 16 19 C -0.11 -2.14 3.13 30.59 0.10 -2.04 16 20 C -0.08 -1.21 3.19 -10.79 -0.03 -1.25 16 21 C -0.11 -1.49 5.19 30.59 0.16 -1.33 16 22 C -0.08 -1.27 3.19 -10.80 -0.03 -1.31 16 23 C -0.11 -1.46 5.19 30.60 0.16 -1.31 16 24 C -0.08 -1.24 3.19 -10.79 -0.03 -1.27 16 25 C -0.11 -1.44 5.19 30.59 0.16 -1.28 16 26 C -0.10 -2.10 4.30 30.60 0.13 -1.97 16 27 C -0.10 -2.07 4.32 30.59 0.13 -1.94 16 28 H 0.06 2.36 8.09 -2.39 -0.02 2.34 16 29 H 0.07 2.19 6.65 -2.39 -0.02 2.18 16 30 H 0.05 2.47 4.86 -2.39 -0.01 2.45 16 31 H 0.15 4.55 4.11 -2.91 -0.01 4.54 16 32 H 0.27 16.73 8.31 -92.71 -0.77 15.96 16 33 H 0.14 4.26 6.60 -2.39 -0.02 4.25 16 34 H 0.07 3.13 6.76 -2.39 -0.02 3.11 16 35 H 0.13 3.27 8.14 -2.38 -0.02 3.25 16 36 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.06 1.33 7.59 -2.39 -0.02 1.31 16 39 H 0.06 1.31 7.41 -2.38 -0.02 1.29 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 48 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.06 1.31 6.80 -2.39 -0.02 1.29 16 51 H 0.06 1.32 7.76 -2.39 -0.02 1.30 16 52 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -75.63 368.55 4.95 -70.68 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.74 Total: 17.81 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 3.85 Total: -28.41 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -1.25 Total: -83.26 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.04 Total: -33.07 kcal Atomic # 14 Polarization: 54.61 SS G_CDS: 1.65 Total: 56.25 kcal Total: -75.63 4.95 -70.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083812921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.414 kcal (2) G-P(sol) polarization free energy of solvation -75.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds