Wall clock time and date at job start Tue Mar 31 2020 06:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47191 * 2 1 4 4 C 1.36895 * 120.00094 * 67.47718 * 3 2 1 5 5 H 1.07995 * 120.00335 * 238.98823 * 4 3 2 6 6 C 1.39038 * 119.99796 * 58.99279 * 4 3 2 7 7 N 1.31377 * 120.00086 * 39.63336 * 6 4 3 8 8 Si 1.86797 * 120.00038 * 219.64282 * 6 4 3 9 9 H 1.48489 * 109.47721 * 89.99604 * 8 6 4 10 10 H 1.48503 * 109.46809 * 209.99980 * 8 6 4 11 11 H 1.48504 * 109.46896 * 329.99571 * 8 6 4 12 12 C 1.34778 * 119.99944 * 247.48653 * 3 2 1 13 13 O 1.21601 * 119.99698 * 191.88475 * 12 3 2 14 14 C 1.47606 * 120.00007 * 11.87525 * 12 3 2 15 15 C 1.39739 * 120.12428 * 25.54659 * 14 12 3 16 16 C 1.37793 * 119.87644 * 179.97438 * 15 14 12 17 17 C 1.38694 * 120.12465 * 359.97438 * 16 15 14 18 18 F 1.35103 * 119.87659 * 179.97438 * 17 16 15 19 19 C 1.38648 * 120.24878 * 359.97438 * 17 16 15 20 20 S 1.76205 * 119.93552 * 180.02562 * 19 17 16 21 21 O 1.42097 * 106.40251 * 48.53952 * 20 19 17 22 22 O 1.42101 * 106.39829 * 181.46025 * 20 19 17 23 23 N 1.65595 * 107.21767 * 295.00046 * 20 19 17 24 24 C 1.46500 * 120.00409 * 65.00260 * 23 20 19 25 25 C 1.37838 * 120.12973 * 359.74498 * 19 17 16 26 26 H 1.08993 * 109.47441 * 342.69176 * 1 2 3 27 27 H 1.09004 * 109.47042 * 102.68842 * 1 2 3 28 28 H 1.09005 * 109.47387 * 222.68802 * 1 2 3 29 29 H 1.09004 * 109.47114 * 119.99623 * 2 1 3 30 30 H 1.08994 * 109.47745 * 239.99715 * 2 1 3 31 31 H 0.96998 * 119.99926 * 180.02562 * 7 6 4 32 32 H 1.07997 * 120.06158 * 359.97438 * 15 14 12 33 33 H 1.07996 * 119.94180 * 180.02562 * 16 15 14 34 34 H 0.97006 * 120.00234 * 245.00556 * 23 20 19 35 35 H 1.09004 * 109.46394 * 300.00149 * 24 23 20 36 36 H 1.09000 * 109.46995 * 59.99168 * 24 23 20 37 37 H 1.08990 * 109.47483 * 179.97438 * 24 23 20 38 38 H 1.07994 * 120.06964 * 180.25422 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.8184 2.1779 1.0951 5 1 1.2675 3.1017 0.9975 6 6 2.3246 1.7979 2.3330 7 7 3.5132 1.2442 2.4148 8 14 1.3145 2.0742 3.8799 9 1 0.4679 0.8819 4.1380 10 1 2.2246 2.2939 5.0326 11 1 0.4481 3.2666 3.6989 12 6 2.6643 1.8676 -1.0783 13 8 3.2561 2.9274 -1.0056 14 6 2.6536 1.1137 -2.3472 15 6 1.6078 0.2310 -2.6298 16 6 1.6027 -0.4698 -3.8162 17 6 2.6327 -0.3000 -4.7294 18 9 2.6229 -0.9901 -5.8909 19 6 3.6724 0.5752 -4.4548 20 16 4.9764 0.7850 -5.6211 21 8 4.3566 0.9952 -6.8824 22 8 5.8894 1.7062 -5.0407 23 7 5.7757 -0.6613 -5.7281 24 6 5.0890 -1.8401 -6.2619 25 6 3.6849 1.2858 -3.2738 26 1 -0.3634 0.9810 0.3057 27 1 -0.3633 -0.2257 -1.0026 28 1 -0.3634 -0.7554 0.6968 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8661 0.9787 3.2784 32 1 0.8051 0.0983 -1.9196 33 1 0.7947 -1.1519 -4.0358 34 1 6.6988 -0.7280 -5.4373 35 1 4.2196 -2.0648 -5.6441 36 1 4.7667 -1.6411 -7.2840 37 1 5.7698 -2.6913 -6.2552 38 1 4.4931 1.9703 -3.0627 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084185883.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:24 Heat of formation + Delta-G solvation = -85.796534 kcal Electronic energy + Delta-G solvation = -26830.088619 eV Core-core repulsion = 22716.113887 eV Total energy + Delta-G solvation = -4113.974731 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -49.43404 -39.86486 -37.55468 -37.23394 -35.90338 -35.29248 -35.16303 -32.68591 -31.34578 -30.51715 -29.71063 -26.20524 -25.54152 -23.68941 -23.23932 -22.34532 -20.27994 -19.45486 -18.23450 -17.76180 -17.43939 -16.80817 -16.68706 -16.51325 -15.86908 -15.62014 -15.01730 -14.79124 -14.60751 -14.28002 -13.96912 -13.94149 -13.67513 -13.49797 -13.15138 -12.91750 -12.46277 -12.19912 -12.12113 -12.03585 -11.97749 -11.71582 -11.70462 -11.60589 -11.24348 -11.18550 -10.83162 -10.72711 -10.45885 -10.40986 -9.81930 -9.41560 -8.99036 -8.70138 -8.51599 -7.44712 -6.50603 -4.19112 0.25878 0.59119 1.01216 2.80800 3.06630 3.15245 3.20596 3.23734 3.57571 3.84670 3.98687 4.22179 4.25814 4.57972 4.68250 4.71422 4.82769 4.99660 5.18528 5.22828 5.25737 5.46171 5.51527 5.56503 5.57665 5.71464 5.86597 5.89664 5.95645 6.05572 6.23152 6.35306 6.58353 6.68737 6.72989 6.82313 7.45565 8.29513 8.40945 9.08349 9.14863 9.89436 10.47375 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.022546 B = 0.003631 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.615257 B = 7708.961705 C = 8312.313262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.086 3.914 3 N -0.432 5.432 4 C -0.350 4.350 5 H 0.086 0.914 6 C 0.073 3.927 7 N -0.814 5.814 8 Si 0.892 3.108 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.265 1.265 12 C 0.501 3.499 13 O -0.550 6.550 14 C -0.129 4.129 15 C -0.041 4.041 16 C -0.177 4.177 17 C 0.184 3.816 18 F -0.125 7.125 19 C -0.719 4.719 20 S 2.702 3.298 21 O -0.949 6.949 22 O -0.949 6.949 23 N -1.118 6.118 24 C 0.076 3.924 25 C 0.047 3.953 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.269 0.731 32 H 0.170 0.830 33 H 0.146 0.854 34 H 0.420 0.580 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 -11.282 -12.335 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.037 4.037 3 N -0.152 5.152 4 C -0.476 4.476 5 H 0.103 0.897 6 C -0.140 4.140 7 N -0.444 5.444 8 Si 0.717 3.283 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.189 1.189 12 C 0.290 3.710 13 O -0.431 6.431 14 C -0.134 4.134 15 C -0.059 4.059 16 C -0.196 4.196 17 C 0.163 3.837 18 F -0.103 7.103 19 C -0.806 4.806 20 S 2.788 3.212 21 O -0.939 6.939 22 O -0.940 6.940 23 N -0.879 5.879 24 C -0.071 4.071 25 C 0.027 3.973 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.186 0.814 33 H 0.164 0.836 34 H 0.254 0.746 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.086 -10.113 -12.701 16.271 hybrid contribution -0.467 -0.751 1.354 1.617 sum -1.553 -10.865 -11.347 15.786 Atomic orbital electron populations 1.22312 0.96823 1.03880 0.99860 1.21957 0.93570 0.86526 1.01660 1.43243 1.48284 1.10341 1.13347 1.18897 1.36584 1.07745 0.84333 0.89684 1.25557 0.93045 0.95422 0.99994 1.70326 1.11909 1.35489 1.26661 0.86520 0.80907 0.79417 0.81463 1.19943 1.21048 1.18894 1.18458 0.81069 0.87430 0.84070 1.90670 1.43623 1.24452 1.84378 1.20901 0.95772 0.99165 0.97514 1.22578 0.97991 0.90361 0.94980 1.21150 0.99339 1.04452 0.94696 1.17151 0.94596 0.90232 0.81725 1.91527 1.96039 1.76740 1.45980 1.30780 1.19620 1.12459 1.17718 1.01812 0.73330 0.72306 0.73757 1.93605 1.77418 1.83717 1.39148 1.93623 1.62012 1.59424 1.78899 1.55299 1.24857 1.27734 1.79976 1.21801 0.97954 0.87667 0.99647 1.20988 0.96884 0.91659 0.87801 0.90173 0.93394 0.92459 0.91547 0.91402 0.92048 0.81355 0.83627 0.74568 0.91456 0.91172 0.90100 0.82126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.69 37.16 0.36 -2.22 16 2 C 0.09 1.62 5.42 -4.04 -0.02 1.60 16 3 N -0.43 -10.23 2.53 -115.97 -0.29 -10.52 16 4 C -0.35 -9.15 7.55 -14.99 -0.11 -9.27 16 5 H 0.09 2.31 8.05 -52.49 -0.42 1.89 16 6 C 0.07 1.87 4.89 -17.45 -0.09 1.79 16 7 N -0.81 -21.98 13.87 55.50 0.77 -21.21 16 8 Si 0.89 19.10 29.69 -169.99 -5.05 14.06 16 9 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 12 C 0.50 12.20 7.36 -12.44 -0.09 12.11 16 13 O -0.55 -15.74 16.62 5.28 0.09 -15.65 16 14 C -0.13 -2.48 5.44 -104.97 -0.57 -3.05 16 15 C -0.04 -0.62 7.44 -39.18 -0.29 -0.91 16 16 C -0.18 -2.25 10.01 -39.58 -0.40 -2.64 16 17 C 0.18 2.52 6.67 -39.26 -0.26 2.26 16 18 F -0.12 -1.52 12.91 2.25 0.03 -1.49 16 19 C -0.72 -10.99 5.89 -39.58 -0.23 -11.22 16 20 S 2.70 38.06 5.48 -107.50 -0.59 37.48 16 21 O -0.95 -15.35 17.14 -57.17 -0.98 -16.33 16 22 O -0.95 -15.92 16.96 -57.17 -0.97 -16.89 16 23 N -1.12 -11.18 6.19 -16.63 -0.10 -11.28 16 24 C 0.08 0.63 9.91 59.85 0.59 1.22 16 25 C 0.05 0.85 9.09 -39.18 -0.36 0.49 16 26 H 0.08 1.37 7.28 -51.93 -0.38 0.99 16 27 H 0.05 0.57 6.17 -51.93 -0.32 0.25 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.35 7.85 -51.93 -0.41 0.94 16 30 H 0.07 1.11 4.45 -51.93 -0.23 0.88 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.17 2.34 2.78 -52.49 -0.15 2.19 16 33 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.42 3.25 8.96 -34.47 -0.31 2.94 16 35 H 0.07 0.57 5.39 -51.93 -0.28 0.29 16 36 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.16 3.06 7.12 -52.49 -0.37 2.69 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -34.75 330.84 -7.27 -42.02 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -3.69 Total: 4.68 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.47 Total: -9.85 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.37 Total: -43.01 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -1.86 Total: -48.87 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.03 Total: -1.49 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.05 Total: 14.06 kcal Atomic # 16 Polarization: 38.06 SS G_CDS: -0.59 Total: 37.48 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.75 -7.27 -42.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084185883.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.778 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds