Wall clock time and date at job start Tue Mar 31 2020 06:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 S 1.65596 * 120.00143 * 2 1 4 4 O 1.42103 * 106.40187 * 311.46044 * 3 2 1 5 5 O 1.42098 * 106.40284 * 178.54103 * 3 2 1 6 6 C 1.76197 * 107.22160 * 64.99907 * 3 2 1 7 7 C 1.37864 * 119.94249 * 115.01735 * 6 3 2 8 8 C 1.39631 * 119.87924 * 179.72085 * 7 6 3 9 9 C 1.47718 * 120.11553 * 180.29877 * 8 7 6 10 10 O 1.21565 * 120.00475 * 0.26621 * 9 8 7 11 11 N 1.34780 * 119.99750 * 180.25753 * 9 8 7 12 12 C 1.46504 * 120.00119 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47141 * 325.00304 * 12 11 9 14 14 C 1.53003 * 109.46946 * 84.99828 * 12 11 9 15 15 C 1.50696 * 109.47286 * 205.00107 * 12 11 9 16 16 H 1.08003 * 119.99816 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99988 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99726 * 180.02562 * 17 15 12 19 19 Si 1.86796 * 119.99775 * 0.02562 * 17 15 12 20 20 H 1.48494 * 109.47336 * 90.00421 * 19 17 15 21 21 H 1.48511 * 109.46852 * 209.99984 * 19 17 15 22 22 H 1.48497 * 109.47516 * 329.99542 * 19 17 15 23 23 C 1.39668 * 119.76348 * 0.56465 * 8 7 6 24 24 C 1.37819 * 119.88016 * 359.43960 * 23 8 7 25 25 C 1.38632 * 119.93928 * 295.00598 * 6 3 2 26 26 F 1.35096 * 119.88261 * 359.97438 * 25 6 3 27 27 H 1.08997 * 109.47110 * 60.00090 * 1 2 3 28 28 H 1.09002 * 109.47300 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46586 * 300.00356 * 1 2 3 30 30 H 0.97000 * 119.99855 * 179.97438 * 2 1 3 31 31 H 1.08002 * 120.05680 * 0.02562 * 7 6 3 32 32 H 0.96997 * 120.00417 * 0.02562 * 11 9 8 33 33 H 1.09002 * 109.46634 * 179.97438 * 14 12 11 34 34 H 1.08995 * 109.47206 * 300.00286 * 14 12 11 35 35 H 1.09002 * 109.46812 * 60.00275 * 14 12 11 36 36 H 0.97006 * 119.99647 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.06242 * 179.72223 * 23 8 7 38 38 H 1.07999 * 119.94072 * 180.28339 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 1.7121 2.2329 -1.0216 5 8 3.6738 1.1002 0.0347 6 6 1.9379 2.2415 1.5253 7 6 2.9449 2.4525 2.4429 8 6 2.6632 3.0978 3.6488 9 6 3.7395 3.3325 4.6329 10 8 4.8739 2.9681 4.3916 11 7 3.4639 3.9509 5.7983 12 6 4.5314 4.1842 6.7742 13 1 5.2349 3.3519 6.7491 14 6 5.2642 5.4819 6.4278 15 6 3.9352 4.2967 8.1536 16 1 2.8678 4.2040 8.2898 17 6 4.7525 4.5178 9.2419 18 7 4.2322 4.6154 10.4458 19 14 6.5985 4.6786 9.0062 20 1 6.9451 6.1031 8.7701 21 1 7.2970 4.1945 10.2241 22 1 7.0210 3.8660 7.8373 23 6 1.3590 3.5154 3.9234 24 6 0.3598 3.2993 2.9991 25 6 0.6464 2.6637 1.8004 26 9 -0.3366 2.4551 0.8974 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9500 -0.8401 0.0004 31 1 3.9508 2.1238 2.2274 32 1 2.5587 4.2414 5.9910 33 1 6.0582 5.6557 7.1542 34 1 5.6954 5.4005 5.4301 35 1 4.5607 6.3141 6.4529 36 1 4.8071 4.7714 11.2114 37 1 1.1348 4.0109 4.8565 38 1 -0.6480 3.6260 3.2086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084186782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:21 Heat of formation + Delta-G solvation = -112.817878 kcal Electronic energy + Delta-G solvation = -26002.568961 eV Core-core repulsion = 21887.422496 eV Total energy + Delta-G solvation = -4115.146465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.78049 -40.13555 -38.21862 -37.49383 -36.15519 -35.37773 -35.20919 -32.76628 -31.85709 -31.32497 -29.56687 -26.40745 -25.31122 -24.31243 -23.95114 -21.60800 -20.27409 -19.68001 -19.00587 -18.05710 -17.85609 -17.07347 -16.95919 -16.63131 -16.18896 -16.01066 -15.41770 -15.01843 -14.78144 -14.55267 -14.45925 -14.03478 -13.89712 -13.53193 -13.34147 -13.09683 -13.00821 -12.62615 -12.39564 -12.31039 -12.27772 -12.25026 -11.90526 -11.87466 -11.38820 -11.20435 -10.89490 -10.26918 -10.10133 -9.93737 -9.84691 -9.45045 -9.34616 -9.23072 -8.85188 -8.33476 -6.29162 -4.32865 -0.04766 0.18791 0.57701 2.43193 2.71698 3.18461 3.29033 3.31112 3.34887 3.47152 3.57177 3.64312 3.99390 4.24822 4.31660 4.57202 4.62114 4.70431 4.82031 5.05825 5.06011 5.14587 5.31463 5.34522 5.39243 5.46416 5.62332 5.79946 6.19485 6.24768 6.28781 6.45770 6.51481 6.75828 7.04137 7.12716 7.39034 7.98052 8.35278 8.60464 8.71488 9.30784 10.82737 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.025837 B = 0.002913 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.473407 B = 9610.198058 C =10180.811706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -1.117 6.117 3 S 2.701 3.299 4 O -0.945 6.945 5 O -0.947 6.947 6 C -0.722 4.722 7 C 0.059 3.941 8 C -0.148 4.148 9 C 0.545 3.455 10 O -0.542 6.542 11 N -0.692 5.692 12 C 0.236 3.764 13 H 0.052 0.948 14 C -0.163 4.163 15 C -0.539 4.539 16 H 0.080 0.920 17 C 0.080 3.920 18 N -0.890 5.890 19 Si 0.885 3.115 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.261 1.261 23 C -0.006 4.006 24 C -0.172 4.172 25 C 0.202 3.798 26 F -0.118 7.118 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.421 0.579 31 H 0.167 0.833 32 H 0.394 0.606 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.054 0.946 36 H 0.268 0.732 37 H 0.151 0.849 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.371 -6.955 -18.731 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.878 5.878 3 S 2.786 3.214 4 O -0.934 6.934 5 O -0.937 6.937 6 C -0.808 4.808 7 C 0.039 3.961 8 C -0.152 4.152 9 C 0.329 3.671 10 O -0.421 6.421 11 N -0.340 5.340 12 C 0.133 3.867 13 H 0.070 0.930 14 C -0.221 4.221 15 C -0.577 4.577 16 H 0.098 0.902 17 C -0.124 4.124 18 N -0.527 5.527 19 Si 0.715 3.285 20 H -0.202 1.202 21 H -0.220 1.220 22 H -0.186 1.186 23 C -0.025 4.025 24 C -0.192 4.192 25 C 0.181 3.819 26 F -0.096 7.096 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.256 0.744 31 H 0.185 0.815 32 H 0.229 0.771 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.169 0.831 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.158 -6.689 -19.327 22.836 hybrid contribution 0.045 0.070 0.849 0.853 sum -10.114 -6.620 -18.478 22.081 Atomic orbital electron populations 1.21825 0.78191 1.04368 1.02798 1.55284 1.16382 1.24311 1.91801 1.01907 0.73002 0.72941 0.73501 1.93626 1.78645 1.68326 1.52852 1.93631 1.30256 1.83181 1.86681 1.30952 0.99482 1.23912 1.26424 1.21009 0.98781 0.87413 0.88896 1.20469 0.94714 1.03276 0.96734 1.18002 0.87601 0.79233 0.82216 1.90777 1.21694 1.52100 1.77522 1.46163 1.13670 1.57272 1.16871 1.19194 0.86370 0.94044 0.87085 0.92985 1.22465 1.00136 1.00224 0.99278 1.20990 0.96151 1.51989 0.88544 0.90163 1.24821 0.98892 0.93870 0.94849 1.69862 1.36053 1.48053 0.98712 0.86874 0.85387 0.78713 0.77546 1.20214 1.22048 1.18564 1.21654 0.91053 0.91564 0.98254 1.21186 1.01840 1.03066 0.93073 1.17217 0.83345 0.94335 0.87050 1.91566 1.60625 1.91644 1.65798 0.91010 0.89878 0.91544 0.74421 0.81523 0.77112 0.93219 0.94353 0.92699 0.92164 0.83118 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 9.91 59.85 0.59 1.04 16 2 N -1.12 -8.33 6.19 -16.63 -0.10 -8.43 16 3 S 2.70 30.06 5.48 -107.50 -0.59 29.47 16 4 O -0.94 -12.81 17.14 -57.17 -0.98 -13.79 16 5 O -0.95 -12.96 16.96 -57.17 -0.97 -13.93 16 6 C -0.72 -8.37 5.89 -39.57 -0.23 -8.61 16 7 C 0.06 0.80 9.09 -39.20 -0.36 0.44 16 8 C -0.15 -2.07 5.87 -104.97 -0.62 -2.68 16 9 C 0.54 9.91 7.73 -12.39 -0.10 9.81 16 10 O -0.54 -11.81 16.01 5.31 0.08 -11.73 16 11 N -0.69 -12.87 5.02 -55.92 -0.28 -13.15 16 12 C 0.24 5.40 2.15 -69.08 -0.15 5.25 16 13 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 14 C -0.16 -3.51 8.96 37.16 0.33 -3.18 16 15 C -0.54 -13.96 9.31 -34.44 -0.32 -14.28 16 16 H 0.08 2.16 7.98 -52.48 -0.42 1.74 16 17 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 18 N -0.89 -25.61 13.96 55.43 0.77 -24.84 16 19 Si 0.89 21.18 24.37 -169.99 -4.14 17.03 16 20 H -0.28 -6.38 6.87 56.52 0.39 -5.99 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.26 -6.20 6.53 56.52 0.37 -5.83 16 23 C -0.01 -0.07 9.54 -39.20 -0.37 -0.44 16 24 C -0.17 -1.57 10.01 -39.57 -0.40 -1.97 16 25 C 0.20 2.08 6.66 -39.27 -0.26 1.82 16 26 F -0.12 -1.12 12.92 2.25 0.03 -1.09 16 27 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.40 5.39 -51.92 -0.28 0.12 16 30 H 0.42 2.23 8.96 -34.47 -0.31 1.92 16 31 H 0.17 2.35 6.91 -52.49 -0.36 1.99 16 32 H 0.39 6.13 6.57 -40.82 -0.27 5.86 16 33 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.15 1.28 6.40 -52.49 -0.34 0.94 16 38 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 330.15 15.07 4.98 4.98 Total: -1.00 -34.83 330.15 -6.96 -41.78 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -3.78 Total: 4.42 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -1.97 Total: -10.72 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.39 Total: -46.43 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.86 Total: -39.45 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.03 Total: -1.09 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.14 Total: 17.03 kcal Atomic # 16 Polarization: 30.06 SS G_CDS: -0.59 Total: 29.47 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.83 -6.96 -41.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084186782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.036 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds