Wall clock time and date at job start Tue Mar 31 2020 06:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 S 1.65596 * 120.00143 * 2 1 4 4 O 1.42103 * 106.40187 * 311.46044 * 3 2 1 5 5 O 1.42098 * 106.40284 * 178.54103 * 3 2 1 6 6 C 1.76197 * 107.22160 * 64.99907 * 3 2 1 7 7 C 1.37864 * 119.94249 * 115.01735 * 6 3 2 8 8 C 1.39631 * 119.87924 * 179.72085 * 7 6 3 9 9 C 1.47718 * 120.11553 * 180.29877 * 8 7 6 10 10 O 1.21565 * 120.00475 * 0.26621 * 9 8 7 11 11 N 1.34780 * 119.99750 * 180.25753 * 9 8 7 12 12 C 1.46504 * 120.00119 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47141 * 325.00304 * 12 11 9 14 14 C 1.53003 * 109.46946 * 84.99828 * 12 11 9 15 15 C 1.50696 * 109.47286 * 205.00107 * 12 11 9 16 16 H 1.08003 * 119.99816 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99988 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99726 * 180.02562 * 17 15 12 19 19 Si 1.86796 * 119.99775 * 0.02562 * 17 15 12 20 20 H 1.48494 * 109.47336 * 90.00421 * 19 17 15 21 21 H 1.48511 * 109.46852 * 209.99984 * 19 17 15 22 22 H 1.48497 * 109.47516 * 329.99542 * 19 17 15 23 23 C 1.39668 * 119.76348 * 0.56465 * 8 7 6 24 24 C 1.37819 * 119.88016 * 359.43960 * 23 8 7 25 25 C 1.38632 * 119.93928 * 295.00598 * 6 3 2 26 26 F 1.35096 * 119.88261 * 359.97438 * 25 6 3 27 27 H 1.08997 * 109.47110 * 60.00090 * 1 2 3 28 28 H 1.09002 * 109.47300 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46586 * 300.00356 * 1 2 3 30 30 H 0.97000 * 119.99855 * 179.97438 * 2 1 3 31 31 H 1.08002 * 120.05680 * 0.02562 * 7 6 3 32 32 H 0.96997 * 120.00417 * 0.02562 * 11 9 8 33 33 H 1.09002 * 109.46634 * 179.97438 * 14 12 11 34 34 H 1.08995 * 109.47206 * 300.00286 * 14 12 11 35 35 H 1.09002 * 109.46812 * 60.00275 * 14 12 11 36 36 H 0.97006 * 119.99647 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.06242 * 179.72223 * 23 8 7 38 38 H 1.07999 * 119.94072 * 180.28339 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 1.7121 2.2329 -1.0216 5 8 3.6738 1.1002 0.0347 6 6 1.9379 2.2415 1.5253 7 6 2.9449 2.4525 2.4429 8 6 2.6632 3.0978 3.6488 9 6 3.7395 3.3325 4.6329 10 8 4.8739 2.9681 4.3916 11 7 3.4639 3.9509 5.7983 12 6 4.5314 4.1842 6.7742 13 1 5.2349 3.3519 6.7491 14 6 5.2642 5.4819 6.4278 15 6 3.9352 4.2967 8.1536 16 1 2.8678 4.2040 8.2898 17 6 4.7525 4.5178 9.2419 18 7 4.2322 4.6154 10.4458 19 14 6.5985 4.6786 9.0062 20 1 6.9451 6.1031 8.7701 21 1 7.2970 4.1945 10.2241 22 1 7.0210 3.8660 7.8373 23 6 1.3590 3.5154 3.9234 24 6 0.3598 3.2993 2.9991 25 6 0.6464 2.6637 1.8004 26 9 -0.3366 2.4551 0.8974 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9500 -0.8401 0.0004 31 1 3.9508 2.1238 2.2274 32 1 2.5587 4.2414 5.9910 33 1 6.0582 5.6557 7.1542 34 1 5.6954 5.4005 5.4301 35 1 4.5607 6.3141 6.4529 36 1 4.8071 4.7714 11.2114 37 1 1.1348 4.0109 4.8565 38 1 -0.6480 3.6260 3.2086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084186782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:21 Heat of formation + Delta-G solvation = -141.845091 kcal Electronic energy + Delta-G solvation = -26003.827675 eV Core-core repulsion = 21887.422496 eV Total energy + Delta-G solvation = -4116.405179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.58465 -41.37233 -39.43926 -38.47304 -37.14002 -36.93739 -35.99709 -34.55343 -33.06262 -32.44759 -31.05054 -27.24557 -26.94608 -25.47428 -24.89620 -23.02321 -21.69654 -20.78216 -20.03638 -19.12406 -18.86366 -18.23802 -18.02845 -17.72096 -17.53753 -16.98716 -16.72712 -16.36377 -16.02496 -15.78229 -15.40169 -15.09022 -14.96912 -14.74592 -14.61238 -14.29596 -14.11391 -13.94980 -13.76108 -13.57007 -13.38783 -13.30272 -13.22610 -13.20161 -12.79761 -12.49639 -12.17259 -12.08294 -11.65320 -11.30191 -11.06013 -10.89439 -10.87467 -10.62512 -10.25352 -9.92891 -8.38934 -6.44884 -0.91829 -0.73731 -0.35896 1.27759 1.36795 1.42156 1.45242 1.87219 2.16090 2.25876 2.35958 2.51387 2.61932 2.97817 3.09491 3.44490 3.57039 3.73012 3.92663 4.14942 4.19493 4.40509 4.44587 4.53767 4.55057 4.60330 4.66844 4.74201 4.81898 4.87707 4.97535 4.98765 5.27267 5.37233 5.39163 5.54115 6.01373 6.09956 6.55521 6.72006 7.13977 7.29643 8.75785 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.025837 B = 0.002913 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.473407 B = 9610.198058 C =10180.811706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -1.104 6.104 3 S 2.715 3.285 4 O -0.970 6.970 5 O -0.979 6.979 6 C -0.725 4.725 7 C 0.048 3.952 8 C -0.166 4.166 9 C 0.546 3.454 10 O -0.585 6.585 11 N -0.688 5.688 12 C 0.240 3.760 13 H 0.026 0.974 14 C -0.158 4.158 15 C -0.533 4.533 16 H 0.064 0.936 17 C 0.033 3.967 18 N -0.931 5.931 19 Si 0.934 3.066 20 H -0.260 1.260 21 H -0.293 1.293 22 H -0.263 1.263 23 C 0.005 3.995 24 C -0.155 4.155 25 C 0.208 3.792 26 F -0.109 7.109 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.432 0.568 31 H 0.150 0.850 32 H 0.410 0.590 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.271 0.729 37 H 0.175 0.825 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.371 -6.843 -19.780 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.869 5.869 3 S 2.801 3.199 4 O -0.960 6.960 5 O -0.970 6.970 6 C -0.811 4.811 7 C 0.028 3.972 8 C -0.171 4.171 9 C 0.334 3.666 10 O -0.467 6.467 11 N -0.338 5.338 12 C 0.136 3.864 13 H 0.044 0.956 14 C -0.216 4.216 15 C -0.571 4.571 16 H 0.082 0.918 17 C -0.167 4.167 18 N -0.569 5.569 19 Si 0.762 3.238 20 H -0.186 1.186 21 H -0.221 1.221 22 H -0.188 1.188 23 C -0.014 4.014 24 C -0.174 4.174 25 C 0.187 3.813 26 F -0.087 7.087 27 H 0.088 0.912 28 H 0.132 0.868 29 H 0.088 0.912 30 H 0.270 0.730 31 H 0.168 0.832 32 H 0.247 0.753 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.192 0.808 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -12.188 -6.576 -20.400 24.656 hybrid contribution 0.496 -0.050 1.099 1.207 sum -11.691 -6.625 -19.301 23.518 Atomic orbital electron populations 1.22091 0.76803 1.06510 1.02866 1.54987 1.17153 1.23412 1.91331 1.01273 0.72301 0.73285 0.73081 1.93592 1.78929 1.69581 1.53892 1.93585 1.32573 1.83737 1.87060 1.30870 0.99861 1.24387 1.25940 1.20851 0.98709 0.88194 0.89464 1.20095 0.94943 1.05975 0.96049 1.18530 0.88060 0.77792 0.82256 1.90748 1.23899 1.53697 1.78394 1.45907 1.13602 1.57750 1.16503 1.18848 0.86978 0.93884 0.86704 0.95640 1.22375 1.00108 0.99758 0.99389 1.21211 0.95487 1.50392 0.90002 0.91819 1.25486 1.02539 0.94014 0.94700 1.69958 1.37472 1.49962 0.99527 0.86081 0.81193 0.79412 0.77160 1.18575 1.22075 1.18789 1.21886 0.89600 0.90487 0.99385 1.21580 1.03192 1.01138 0.91510 1.17366 0.82898 0.93521 0.87542 1.91601 1.60043 1.91432 1.65603 0.91185 0.86822 0.91243 0.73032 0.83228 0.75268 0.93962 0.93605 0.91216 0.92010 0.80786 0.78809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 9.91 127.77 1.27 1.86 16 2 N -1.10 -14.65 6.19 -206.52 -1.28 -15.93 16 3 S 2.71 58.88 5.48 -56.49 -0.31 58.58 16 4 O -0.97 -25.59 17.14 -128.00 -2.19 -27.78 16 5 O -0.98 -27.33 16.96 -128.00 -2.17 -29.51 16 6 C -0.72 -15.93 5.89 22.28 0.13 -15.80 16 7 C 0.05 1.29 9.09 22.52 0.20 1.49 16 8 C -0.17 -4.49 5.87 -20.09 -0.12 -4.61 16 9 C 0.55 19.81 7.73 86.75 0.67 20.48 16 10 O -0.59 -26.15 16.01 -3.92 -0.06 -26.22 16 11 N -0.69 -25.13 5.02 -449.09 -2.25 -27.38 16 12 C 0.24 10.93 2.15 44.24 0.10 11.03 16 13 H 0.03 1.31 6.63 -2.39 -0.02 1.29 16 14 C -0.16 -6.64 8.96 71.98 0.65 -6.00 16 15 C -0.53 -27.61 9.31 25.60 0.24 -27.38 16 16 H 0.06 3.44 7.98 -2.91 -0.02 3.42 16 17 C 0.03 1.79 5.45 84.66 0.46 2.25 16 18 N -0.93 -53.95 13.96 21.45 0.30 -53.65 16 19 Si 0.93 43.55 24.37 68.60 1.67 45.22 16 20 H -0.26 -11.41 6.87 99.48 0.68 -10.72 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.26 -12.27 6.53 99.48 0.65 -11.62 16 23 C 0.01 0.09 9.54 22.52 0.21 0.31 16 24 C -0.16 -2.18 10.01 22.28 0.22 -1.96 16 25 C 0.21 3.68 6.66 22.47 0.15 3.83 16 26 F -0.11 -1.70 12.92 44.97 0.58 -1.12 16 27 H 0.07 0.71 8.10 -2.39 -0.02 0.69 16 28 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.07 0.62 5.39 -2.38 -0.01 0.61 16 30 H 0.43 3.90 8.96 -96.75 -0.87 3.03 16 31 H 0.15 4.47 6.91 -2.91 -0.02 4.45 16 32 H 0.41 12.10 6.57 -92.71 -0.61 11.49 16 33 H 0.04 1.82 3.27 -2.39 -0.01 1.82 16 34 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 37 H 0.17 2.30 6.40 -2.91 -0.02 2.28 16 38 H 0.19 1.19 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -76.44 330.15 -1.94 -78.38 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -0.41 Total: 13.90 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 4.18 Total: -14.49 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -3.23 Total: -96.96 kcal Atomic # 8 Polarization: -79.07 SS G_CDS: -4.43 Total: -83.50 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.58 Total: -1.12 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.67 Total: 45.22 kcal Atomic # 16 Polarization: 58.88 SS G_CDS: -0.31 Total: 58.58 kcal Total: -76.44 -1.94 -78.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084186782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.466 kcal (2) G-P(sol) polarization free energy of solvation -76.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds