Wall clock time and date at job start Tue Mar 31 2020 06:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 S 1.65595 * 119.99876 * 2 1 4 4 O 1.42105 * 106.40149 * 178.54167 * 3 2 1 5 5 O 1.42098 * 106.40317 * 311.46040 * 3 2 1 6 6 C 1.76204 * 107.21987 * 65.00402 * 3 2 1 7 7 C 1.37851 * 119.94129 * 114.72204 * 6 3 2 8 8 C 1.39635 * 119.87564 * 179.79192 * 7 6 3 9 9 C 1.47729 * 120.11768 * 180.20973 * 8 7 6 10 10 O 1.21576 * 119.99696 * 0.29456 * 9 8 7 11 11 N 1.34775 * 120.00215 * 180.29882 * 9 8 7 12 12 C 1.46500 * 119.99996 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.46972 * 34.99881 * 12 11 9 14 14 C 1.53000 * 109.47220 * 275.00066 * 12 11 9 15 15 C 1.50700 * 109.46774 * 154.99960 * 12 11 9 16 16 H 1.07992 * 120.00533 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99693 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00149 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 119.99985 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47145 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47367 * 119.99883 * 19 17 15 22 22 H 1.48502 * 109.47024 * 240.00175 * 19 17 15 23 23 C 1.39671 * 119.76802 * 0.50448 * 8 7 6 24 24 C 1.37815 * 119.87428 * 359.72476 * 23 8 7 25 25 C 1.38636 * 119.93671 * 294.99418 * 6 3 2 26 26 F 1.35104 * 119.88243 * 359.97438 * 25 6 3 27 27 H 1.09003 * 109.46985 * 300.00166 * 1 2 3 28 28 H 1.08991 * 109.47084 * 59.99708 * 1 2 3 29 29 H 1.08996 * 109.47112 * 180.02562 * 1 2 3 30 30 H 0.96997 * 120.00091 * 179.97438 * 2 1 3 31 31 H 1.07997 * 120.06017 * 0.02562 * 7 6 3 32 32 H 0.97002 * 119.99931 * 0.02562 * 11 9 8 33 33 H 1.08996 * 109.47055 * 180.02562 * 14 12 11 34 34 H 1.09004 * 109.46996 * 299.99800 * 14 12 11 35 35 H 1.08992 * 109.47026 * 59.99793 * 14 12 11 36 36 H 0.96998 * 120.00262 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.06257 * 179.70398 * 23 8 7 38 38 H 1.07996 * 119.94195 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6739 1.1003 0.0347 5 8 1.7120 2.2329 -1.0216 6 6 1.9379 2.2414 1.5254 7 6 2.9436 2.4470 2.4455 8 6 2.6616 3.0908 3.6521 9 6 3.7363 3.3180 4.6399 10 8 4.8697 2.9490 4.4007 11 7 3.4602 3.9343 5.8063 12 6 4.5259 4.1591 6.7861 13 1 5.4606 4.3666 6.2652 14 6 4.6923 2.9102 7.6542 15 6 4.1658 5.3334 7.6592 16 1 3.2361 5.8595 7.5005 17 6 5.0235 5.7364 8.6608 18 7 6.1555 5.0955 8.8545 19 14 4.5770 7.1916 9.7435 20 1 3.2601 7.7349 9.3242 21 1 4.5029 6.7507 11.1596 22 1 5.6133 8.2465 9.6070 23 6 1.3586 3.5137 3.9243 24 6 0.3598 3.2989 2.9994 25 6 0.6464 2.6637 1.8005 26 9 -0.3366 2.4553 0.8974 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.9501 -0.8400 0.0004 31 1 3.9486 2.1141 2.2319 32 1 2.5558 4.2283 5.9973 33 1 5.4848 3.0776 8.3835 34 1 3.7576 2.7027 8.1752 35 1 4.9526 2.0609 7.0227 36 1 6.7587 5.3787 9.5594 37 1 1.1342 4.0079 4.8581 38 1 -0.6482 3.6251 3.2090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084186785.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:25 Heat of formation + Delta-G solvation = -121.166682 kcal Electronic energy + Delta-G solvation = -25934.013890 eV Core-core repulsion = 21818.505394 eV Total energy + Delta-G solvation = -4115.508496 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.73458 -40.01372 -38.06295 -37.45063 -36.11185 -35.34963 -34.98559 -32.76964 -31.74400 -31.13216 -28.76113 -26.38322 -25.35746 -24.21076 -23.86641 -21.49896 -20.19318 -19.55699 -18.94579 -18.00768 -17.75858 -17.01283 -16.91238 -16.59437 -16.03668 -15.69112 -15.32079 -14.94717 -14.62165 -14.47598 -14.36563 -13.99670 -13.84874 -13.54496 -13.21043 -13.04118 -12.61250 -12.53044 -12.33350 -12.25472 -12.15437 -11.88284 -11.77895 -11.18432 -11.14461 -11.04511 -10.85399 -10.39484 -10.32553 -10.06163 -9.89125 -9.38726 -9.18687 -9.12038 -8.65087 -8.08724 -6.20522 -4.30658 -0.00138 0.24382 0.63879 2.50011 2.77640 3.18528 3.26423 3.28489 3.34602 3.52118 3.70617 3.78928 4.04859 4.27816 4.37236 4.62580 4.64948 4.81011 4.87822 5.08073 5.12211 5.21906 5.36250 5.38053 5.42367 5.52528 5.70225 5.87705 6.28759 6.54465 6.72681 6.85333 7.03789 7.27948 7.42235 7.58569 7.80227 8.04776 8.45941 8.64945 8.89570 9.36896 10.85511 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.026171 B = 0.002784 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.624263 B =10054.376881 C =10602.181917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -1.117 6.117 3 S 2.701 3.299 4 O -0.947 6.947 5 O -0.945 6.945 6 C -0.721 4.721 7 C 0.058 3.942 8 C -0.145 4.145 9 C 0.541 3.459 10 O -0.540 6.540 11 N -0.698 5.698 12 C 0.263 3.737 13 H 0.053 0.947 14 C -0.148 4.148 15 C -0.537 4.537 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.881 5.881 19 Si 0.903 3.097 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.008 4.008 24 C -0.173 4.173 25 C 0.199 3.801 26 F -0.119 7.119 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.421 0.579 31 H 0.167 0.833 32 H 0.388 0.612 33 H 0.092 0.908 34 H 0.027 0.973 35 H 0.016 0.984 36 H 0.265 0.735 37 H 0.150 0.850 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.444 -9.192 -13.883 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.878 5.878 3 S 2.786 3.214 4 O -0.937 6.937 5 O -0.935 6.935 6 C -0.807 4.807 7 C 0.038 3.962 8 C -0.150 4.150 9 C 0.325 3.675 10 O -0.420 6.420 11 N -0.346 5.346 12 C 0.162 3.838 13 H 0.070 0.930 14 C -0.207 4.207 15 C -0.575 4.575 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.027 4.027 24 C -0.192 4.192 25 C 0.178 3.822 26 F -0.097 7.097 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.256 0.744 31 H 0.185 0.815 32 H 0.221 0.779 33 H 0.111 0.889 34 H 0.046 0.954 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.167 0.833 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.081 -8.951 -14.558 22.143 hybrid contribution -1.089 0.645 1.406 1.892 sum -15.169 -8.305 -13.152 21.727 Atomic orbital electron populations 1.21817 0.78240 1.04306 1.02792 1.55293 1.16351 1.24332 1.91828 1.01915 0.73010 0.72933 0.73516 1.93634 1.30209 1.83168 1.86676 1.93623 1.78653 1.68308 1.52897 1.30940 0.99504 1.23894 1.26352 1.21024 0.98739 0.87535 0.88918 1.20590 0.94851 1.02727 0.96794 1.17991 0.87505 0.79734 0.82221 1.90783 1.21603 1.51621 1.77951 1.46523 1.14050 1.56808 1.17243 1.18853 0.86249 0.93629 0.85075 0.92966 1.22090 1.01572 0.96386 1.00609 1.21213 1.06156 1.13941 1.16227 0.91969 1.24890 0.94714 0.96989 0.97062 1.69904 1.09945 1.39845 1.32157 0.86370 0.78506 0.81990 0.80081 1.19733 1.20826 1.20806 1.21636 0.91133 0.91674 0.98296 1.21165 1.01760 1.03142 0.93150 1.17204 0.83353 0.94584 0.87069 1.91563 1.60643 1.91693 1.65831 0.91562 0.91028 0.89923 0.74441 0.81519 0.77878 0.88926 0.95379 0.96485 0.92488 0.83260 0.83055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 9.91 59.85 0.59 1.06 16 2 N -1.12 -8.66 6.19 -16.63 -0.10 -8.76 16 3 S 2.70 31.32 5.48 -107.50 -0.59 30.74 16 4 O -0.95 -13.44 16.96 -57.17 -0.97 -14.41 16 5 O -0.95 -13.27 17.14 -57.17 -0.98 -14.25 16 6 C -0.72 -8.76 5.89 -39.58 -0.23 -8.99 16 7 C 0.06 0.82 9.09 -39.20 -0.36 0.47 16 8 C -0.15 -2.15 5.87 -104.96 -0.62 -2.77 16 9 C 0.54 10.48 7.73 -12.38 -0.10 10.38 16 10 O -0.54 -12.61 16.01 5.30 0.08 -12.53 16 11 N -0.70 -13.72 5.02 -55.91 -0.28 -14.00 16 12 C 0.26 6.44 2.56 -69.08 -0.18 6.26 16 13 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 14 C -0.15 -3.55 9.26 37.16 0.34 -3.20 16 15 C -0.54 -13.68 8.73 -34.44 -0.30 -13.98 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -24.20 11.32 55.43 0.63 -23.57 16 19 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.01 -0.09 9.54 -39.20 -0.37 -0.47 16 24 C -0.17 -1.65 10.01 -39.57 -0.40 -2.04 16 25 C 0.20 2.15 6.66 -39.27 -0.26 1.88 16 26 F -0.12 -1.17 12.92 2.25 0.03 -1.14 16 27 H 0.07 0.41 5.39 -51.93 -0.28 0.13 16 28 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.42 2.33 8.96 -34.47 -0.31 2.02 16 31 H 0.17 2.50 6.91 -52.49 -0.36 2.13 16 32 H 0.39 6.27 6.57 -40.82 -0.27 6.00 16 33 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.15 1.33 6.40 -52.49 -0.34 0.99 16 38 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 336.97 15.07 5.08 5.08 Total: -1.00 -34.05 336.97 -8.01 -42.05 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -3.92 Total: 5.52 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -1.97 Total: -9.74 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.24 Total: -46.33 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -1.86 Total: -41.19 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.03 Total: -1.14 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 31.32 SS G_CDS: -0.59 Total: 30.74 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.05 -8.01 -42.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084186785.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.112 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds