Wall clock time and date at job start Tue Mar 31 2020 05:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38257 * 120.00095 * 2 1 4 4 C 1.38214 * 119.99992 * 179.97438 * 3 2 1 5 5 C 1.38249 * 120.00244 * 0.07019 * 4 3 2 6 6 C 1.38212 * 120.00060 * 359.91396 * 5 4 3 7 7 C 1.50704 * 120.00457 * 180.02562 * 6 5 4 8 8 H 1.08998 * 115.54872 * 154.30641 * 7 6 5 9 9 C 1.52995 * 117.49349 * 8.59719 * 7 6 5 10 10 C 1.52994 * 117.49581 * 299.97663 * 7 6 5 11 11 H 1.09002 * 117.50310 * 215.00109 * 10 7 6 12 12 C 1.50704 * 117.50070 * 0.02562 * 10 7 6 13 13 O 1.20829 * 119.99876 * 359.97438 * 12 10 7 14 14 O 1.34229 * 120.00057 * 180.02562 * 12 10 7 15 15 C 1.45200 * 116.99807 * 179.97438 * 14 12 10 16 16 C 1.53039 * 109.46608 * 270.06886 * 15 14 12 17 17 C 1.53191 * 109.31374 * 178.61681 * 16 15 14 18 18 N 1.46924 * 108.77810 * 54.63611 * 17 16 15 19 19 C 1.36928 * 120.63278 * 126.36994 * 18 17 16 20 20 H 1.08005 * 120.00066 * 207.70274 * 19 18 17 21 21 C 1.38811 * 120.00146 * 27.69871 * 19 18 17 22 22 N 1.31612 * 120.00165 * 17.34662 * 21 19 18 23 23 Si 1.86807 * 120.00126 * 197.35474 * 21 19 18 24 24 H 1.48495 * 109.47186 * 89.99483 * 23 21 19 25 25 H 1.48498 * 109.47053 * 210.00015 * 23 21 19 26 26 H 1.48504 * 109.46944 * 329.99536 * 23 21 19 27 27 C 1.46925 * 118.73665 * 306.38943 * 18 17 16 28 28 C 1.53048 * 109.45815 * 149.99888 * 15 14 12 29 29 C 1.38211 * 120.00081 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47566 * 89.99590 * 1 2 3 31 31 H 1.09006 * 109.47393 * 209.99512 * 1 2 3 32 32 H 1.09008 * 109.47142 * 329.99510 * 1 2 3 33 33 H 1.08001 * 119.99719 * 359.70947 * 3 2 1 34 34 H 1.08001 * 119.99624 * 180.02562 * 4 3 2 35 35 H 1.08005 * 120.00334 * 179.97438 * 5 4 3 36 36 H 1.09006 * 117.50276 * 359.97438 * 9 7 6 37 37 H 1.08997 * 117.49851 * 145.02647 * 9 7 6 38 38 H 1.09003 * 109.45792 * 30.02928 * 15 14 12 39 39 H 1.08999 * 109.49327 * 298.56898 * 16 15 14 40 40 H 1.08997 * 109.49822 * 58.65830 * 16 15 14 41 41 H 1.08998 * 109.58479 * 294.84668 * 17 16 15 42 42 H 1.08999 * 109.58586 * 174.42128 * 17 16 15 43 43 H 0.96999 * 120.00708 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.58835 * 293.82032 * 27 18 17 45 45 H 1.09000 * 109.58657 * 173.39136 * 27 18 17 46 46 H 1.08997 * 109.49541 * 301.33858 * 28 15 14 47 47 H 1.09001 * 109.49608 * 61.43772 * 28 15 14 48 48 H 1.08003 * 120.00049 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0001 -0.0004 6 6 3.5806 -1.1969 -0.0001 7 6 4.3341 -2.5021 -0.0005 8 1 3.8019 -3.3523 0.4261 9 6 5.8495 -2.4429 0.2016 10 6 5.2739 -2.7748 -1.1766 11 1 5.3601 -3.8044 -1.5238 12 6 5.3757 -1.7174 -2.2456 13 8 4.7284 -0.7013 -2.1540 14 8 6.1848 -1.9049 -3.3001 15 6 6.2324 -0.8448 -4.2912 16 6 5.1647 -1.0960 -5.3584 17 6 5.1949 0.0423 -6.3831 18 7 6.5598 0.1661 -6.9125 19 6 6.7900 0.1377 -8.2620 20 1 7.7382 -0.2144 -8.6409 21 6 5.8046 0.5612 -9.1432 22 7 4.8036 1.2962 -8.7073 23 14 5.8992 0.0879 -10.9479 24 1 5.1878 -1.1981 -11.1602 25 1 5.2633 1.1474 -11.7715 26 1 7.3219 -0.0617 -11.3464 27 6 7.6732 0.3205 -5.9663 28 6 7.6154 -0.8210 -4.9463 29 6 2.1980 -1.1969 0.0005 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8901 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.6582 2.1326 -0.0047 34 1 4.1204 2.1327 0.0010 35 1 5.3517 0.0000 -0.0004 36 1 6.3016 -1.4599 0.3344 37 1 6.3147 -3.2543 0.7613 38 1 6.0434 0.1134 -3.8072 39 1 5.3673 -2.0424 -5.8599 40 1 4.1824 -1.1362 -4.8879 41 1 4.9039 0.9756 -5.9010 42 1 4.5059 -0.1809 -7.1977 43 1 4.1152 1.5925 -9.3231 44 1 7.5844 1.2765 -5.4503 45 1 8.6195 0.2806 -6.5059 46 1 8.3771 -0.6653 -4.1824 47 1 7.7948 -1.7700 -5.4517 48 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089669411.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:30 Heat of formation + Delta-G solvation = -12.559028 kcal Electronic energy + Delta-G solvation = -28411.220157 eV Core-core repulsion = 24625.529696 eV Total energy + Delta-G solvation = -3785.690461 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.83479 -39.35610 -37.75504 -36.62868 -35.54615 -32.73252 -32.46337 -30.83131 -30.27571 -29.70246 -26.90867 -25.89791 -24.53375 -23.74452 -22.25670 -22.21964 -21.88455 -20.49421 -19.52221 -19.18899 -17.80054 -17.00433 -16.71355 -15.96071 -15.58460 -15.32922 -14.88245 -14.62985 -14.44897 -14.01881 -13.78677 -13.65094 -13.49087 -13.16288 -13.10197 -12.81288 -12.68828 -12.47358 -12.31344 -12.29847 -11.99265 -11.52689 -11.34244 -11.14680 -11.09222 -11.01489 -10.75971 -10.74292 -10.70346 -10.62984 -10.31844 -10.20005 -10.11574 -9.90370 -9.66438 -9.39051 -8.62732 -8.48768 -8.15436 -6.73795 -5.81120 -3.24096 1.37792 1.55513 2.33373 2.86648 3.37727 3.44385 3.45634 3.51137 3.95568 4.31869 4.47856 4.54448 4.60635 4.80653 4.93462 4.96259 5.04883 5.15566 5.26143 5.33903 5.36513 5.38434 5.43868 5.45015 5.54160 5.55419 5.59757 5.73726 5.75298 5.77939 5.79299 6.02936 6.13798 6.20553 6.21411 6.31884 6.48216 6.53226 6.58419 6.60309 6.66249 6.70100 6.71409 6.88611 6.99384 7.13830 7.31831 7.61739 7.77657 8.08607 8.41644 9.17599 9.80706 10.37065 11.27746 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.015193 B = 0.003007 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.477839 B = 9310.685550 C =10360.735059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.117 4.117 4 C -0.121 4.121 5 C -0.061 4.061 6 C -0.051 4.051 7 C -0.080 4.080 8 H 0.125 0.875 9 C -0.146 4.146 10 C -0.157 4.157 11 H 0.136 0.864 12 C 0.479 3.521 13 O -0.486 6.486 14 O -0.357 6.357 15 C 0.101 3.899 16 C -0.152 4.152 17 C 0.176 3.824 18 N -0.592 5.592 19 C -0.256 4.256 20 H 0.068 0.932 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.904 3.096 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.148 3.852 28 C -0.127 4.127 29 C -0.110 4.110 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.021 0.979 42 H 0.093 0.907 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 -7.031 21.474 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C -0.135 4.135 4 C -0.139 4.139 5 C -0.079 4.079 6 C -0.051 4.051 7 C -0.099 4.099 8 H 0.143 0.857 9 C -0.183 4.183 10 C -0.176 4.176 11 H 0.154 0.846 12 C 0.321 3.679 13 O -0.374 6.374 14 O -0.274 6.274 15 C 0.047 3.953 16 C -0.192 4.192 17 C 0.049 3.951 18 N -0.315 5.315 19 C -0.385 4.385 20 H 0.085 0.915 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.734 3.266 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.204 1.204 27 C 0.022 3.978 28 C -0.167 4.167 29 C -0.128 4.128 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.111 0.889 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.791 -6.609 21.330 22.505 hybrid contribution -0.030 -0.190 -1.187 1.203 sum -2.821 -6.800 20.143 21.446 Atomic orbital electron populations 1.20744 0.91559 1.02223 1.02218 1.19739 0.95703 0.93145 1.01190 1.20934 0.94271 0.97228 1.01079 1.20956 0.94245 0.97743 1.00950 1.20679 0.99025 0.91901 0.96289 1.18790 0.93133 0.92528 1.00655 1.21177 0.91779 0.97732 0.99163 0.85736 1.23203 0.95648 1.04265 0.95137 1.21863 1.08112 0.99355 0.88226 0.84589 1.22453 0.77159 0.86449 0.81828 1.90759 1.41845 1.28643 1.76102 1.86506 1.60420 1.48687 1.31783 1.22887 0.97832 0.88557 0.86040 1.22644 0.96508 1.02757 0.97258 1.20758 0.87792 0.92235 0.94269 1.44126 1.01189 1.84181 1.02020 1.19203 1.01574 1.36557 0.81187 0.91453 1.25062 0.98873 0.97502 0.98138 1.70029 1.14149 1.35901 1.34502 0.86266 0.77716 0.77790 0.84855 1.21394 1.21727 1.20373 1.20884 0.92880 0.93443 0.90627 1.22228 0.93593 1.02285 0.98589 1.20642 0.93067 0.97330 1.01721 0.91348 0.91921 0.91858 0.86632 0.86557 0.87203 0.87685 0.86840 0.90471 0.91838 0.92852 0.96045 0.88868 0.93522 0.96163 0.91830 0.92379 0.91197 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.00 0.36 -0.68 16 2 C -0.10 -1.19 5.88 -104.63 -0.62 -1.80 16 3 C -0.12 -1.48 9.70 -39.58 -0.38 -1.86 16 4 C -0.12 -1.60 10.05 -39.59 -0.40 -1.99 16 5 C -0.06 -0.81 6.18 -39.59 -0.24 -1.05 16 6 C -0.05 -0.64 4.37 -104.62 -0.46 -1.09 16 7 C -0.08 -0.79 6.04 -91.77 -0.55 -1.34 16 8 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 9 C -0.15 -1.23 9.57 -26.74 -0.26 -1.49 16 10 C -0.16 -1.71 6.30 -91.77 -0.58 -2.29 16 11 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 12 C 0.48 7.39 7.57 36.01 0.27 7.66 16 13 O -0.49 -8.59 10.93 -18.75 -0.21 -8.79 16 14 O -0.36 -6.07 9.88 -39.26 -0.39 -6.46 16 15 C 0.10 1.90 2.41 -26.69 -0.06 1.84 16 16 C -0.15 -3.19 5.72 -26.61 -0.15 -3.34 16 17 C 0.18 4.36 5.31 -3.71 -0.02 4.34 16 18 N -0.59 -15.09 2.99 -172.32 -0.52 -15.61 16 19 C -0.26 -7.05 9.58 -15.06 -0.14 -7.20 16 20 H 0.07 1.81 7.89 -52.48 -0.41 1.40 16 21 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 22 N -0.90 -26.44 11.19 55.49 0.62 -25.82 16 23 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.15 3.14 6.52 -3.71 -0.02 3.11 16 28 C -0.13 -2.32 5.74 -26.61 -0.15 -2.47 16 29 C -0.11 -1.33 9.39 -39.58 -0.37 -1.70 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.06 0.52 8.09 -51.92 -0.42 0.10 16 33 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.11 1.39 5.78 -52.48 -0.30 1.09 16 36 H 0.10 0.95 6.18 -51.93 -0.32 0.63 16 37 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.55 7.16 -51.93 -0.37 1.18 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 2.56 6.04 -51.93 -0.31 2.25 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -31.80 382.22 -11.23 -43.03 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.61 Total: 2.52 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -3.87 Total: -11.37 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.10 Total: -41.43 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.59 Total: -15.25 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.80 -11.23 -43.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089669411.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.470 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds