Wall clock time and date at job start Tue Mar 31 2020 05:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38257 * 119.99681 * 2 1 4 4 C 1.38213 * 120.00239 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99686 * 359.97438 * 4 3 2 6 6 C 1.38212 * 120.00220 * 0.08730 * 5 4 3 7 7 C 1.50702 * 119.99978 * 179.97438 * 6 5 4 8 8 H 1.09001 * 115.54544 * 205.60703 * 7 6 5 9 9 C 1.52995 * 117.50154 * 351.30958 * 7 6 5 10 10 C 1.52990 * 117.49981 * 59.93593 * 7 6 5 11 11 H 1.08996 * 117.50137 * 0.02562 * 10 7 6 12 12 C 1.50708 * 117.50006 * 145.02004 * 10 7 6 13 13 O 1.20817 * 119.99573 * 359.97438 * 12 10 7 14 14 O 1.34223 * 119.99752 * 179.97438 * 12 10 7 15 15 C 1.45210 * 116.99703 * 179.97438 * 14 12 10 16 16 C 1.53040 * 109.45866 * 270.07138 * 15 14 12 17 17 C 1.53199 * 109.30758 * 178.61322 * 16 15 14 18 18 N 1.46927 * 108.77411 * 54.63670 * 17 16 15 19 19 C 1.36938 * 120.63145 * 126.41410 * 18 17 16 20 20 H 1.07990 * 119.99776 * 207.66175 * 19 18 17 21 21 C 1.38814 * 119.99827 * 27.65502 * 19 18 17 22 22 N 1.31619 * 119.99746 * 17.37445 * 21 19 18 23 23 Si 1.86793 * 119.99936 * 197.36754 * 21 19 18 24 24 H 1.48500 * 109.47462 * 60.00317 * 23 21 19 25 25 H 1.48502 * 109.47377 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47377 * 300.00367 * 23 21 19 27 27 C 1.46925 * 118.73855 * 306.38430 * 18 17 16 28 28 C 1.53036 * 109.45839 * 150.00113 * 15 14 12 29 29 C 1.38212 * 120.00467 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47177 * 269.97650 * 1 2 3 31 31 H 1.08996 * 109.47111 * 29.98079 * 1 2 3 32 32 H 1.09002 * 109.46694 * 149.98049 * 1 2 3 33 33 H 1.08006 * 120.00366 * 359.97438 * 3 2 1 34 34 H 1.07994 * 120.00669 * 179.97438 * 4 3 2 35 35 H 1.08003 * 120.00124 * 179.97438 * 5 4 3 36 36 H 1.09001 * 117.50255 * 214.97959 * 9 7 6 37 37 H 1.09010 * 117.49717 * 0.02562 * 9 7 6 38 38 H 1.08998 * 109.45490 * 30.03215 * 15 14 12 39 39 H 1.09000 * 109.49736 * 298.56211 * 16 15 14 40 40 H 1.09000 * 109.49809 * 58.66557 * 16 15 14 41 41 H 1.08997 * 109.58471 * 294.84545 * 17 16 15 42 42 H 1.09006 * 109.58096 * 174.42173 * 17 16 15 43 43 H 0.97005 * 119.99257 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.58978 * 293.83013 * 27 18 17 45 45 H 1.08999 * 109.70286 * 173.46569 * 27 18 17 46 46 H 1.09008 * 109.49926 * 301.34010 * 28 15 14 47 47 H 1.08995 * 109.49993 * 61.43731 * 28 15 14 48 48 H 1.07995 * 119.99490 * 359.69589 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 3.5807 -1.1968 -0.0018 7 6 4.3343 -2.5019 -0.0024 8 1 3.8016 -3.3521 -0.4284 9 6 5.8495 -2.4427 -0.2066 10 6 5.2757 -2.7745 1.1724 11 1 5.3497 -2.0103 1.9459 12 6 5.3960 -4.1983 1.6518 13 8 4.7614 -5.0731 1.1117 14 8 6.2080 -4.4942 2.6787 15 6 6.2737 -5.8861 3.0872 16 6 5.2083 -6.1557 4.1523 17 6 5.2576 -7.6328 4.5556 18 7 6.6266 -7.9633 4.9743 19 6 6.8631 -8.5425 6.1923 20 1 7.8088 -8.3865 6.6899 21 6 5.8872 -9.3301 6.7875 22 7 4.8932 -9.8033 6.0662 23 14 5.9849 -9.7185 8.6120 24 1 5.9490 -8.4541 9.3899 25 1 4.8322 -10.5711 8.9991 26 1 7.2513 -10.4395 8.8976 27 6 7.7371 -7.6609 4.0609 28 6 7.6600 -6.1835 3.6631 29 6 2.1982 -1.1969 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6582 2.1327 -0.0004 34 1 4.1203 2.1328 -0.0010 35 1 5.3517 0.0002 -0.0014 36 1 6.3139 -3.2540 -0.7670 37 1 6.3013 -1.4596 -0.3401 38 1 6.0941 -6.5267 2.2238 39 1 5.4017 -5.5334 5.0260 40 1 4.2231 -5.9214 3.7490 41 1 4.9757 -8.2534 3.7050 42 1 4.5699 -7.8088 5.3829 43 1 4.2114 -10.3540 6.4821 44 1 7.6574 -8.2838 3.1699 45 1 8.6865 -7.8560 4.5595 46 1 8.4199 -5.9689 2.9116 47 1 7.8303 -5.5610 4.5414 48 1 1.6582 -2.1321 0.0040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089669413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:35 Heat of formation + Delta-G solvation = -25.419747 kcal Electronic energy + Delta-G solvation = -27230.669089 eV Core-core repulsion = 23444.420946 eV Total energy + Delta-G solvation = -3786.248144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.70972 -39.78114 -37.89835 -36.72940 -35.66564 -32.84640 -32.68607 -31.16856 -30.29486 -29.71564 -27.23578 -25.95617 -24.61281 -23.84473 -22.44862 -22.25635 -21.94067 -20.45233 -19.74447 -19.27197 -17.87679 -16.99765 -16.94913 -16.40074 -15.65296 -15.43100 -15.22401 -14.84773 -14.31800 -14.15848 -14.07173 -13.66188 -13.51411 -13.38821 -13.13226 -12.87382 -12.63316 -12.60595 -12.50889 -12.37681 -12.17852 -11.63284 -11.53098 -11.28727 -11.24080 -11.16999 -10.95912 -10.76711 -10.73100 -10.69067 -10.33527 -10.28288 -10.21464 -9.90690 -9.68621 -9.41045 -9.03077 -8.81015 -8.48688 -6.74154 -5.81602 -3.24312 0.97941 1.10380 2.22732 2.78806 3.31335 3.38087 3.43874 3.45164 3.74706 4.22810 4.41035 4.47753 4.50118 4.58111 4.62636 4.81539 4.84570 4.98433 5.04839 5.14115 5.24421 5.29871 5.33086 5.37150 5.41182 5.43519 5.51960 5.53255 5.64243 5.71192 5.73298 5.78885 5.86178 6.01796 6.17870 6.20410 6.29070 6.29640 6.34721 6.45959 6.51437 6.59012 6.69032 6.71659 6.86624 6.94878 7.30725 7.60624 7.77103 7.99280 8.41350 9.17175 9.80292 10.36609 11.27394 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.002172 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.413912 B =12886.693951 C =13652.433831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.114 4.114 5 C -0.125 4.125 6 C -0.049 4.049 7 C -0.084 4.084 8 H 0.129 0.871 9 C -0.141 4.141 10 C -0.152 4.152 11 H 0.135 0.865 12 C 0.488 3.512 13 O -0.508 6.508 14 O -0.353 6.353 15 C 0.098 3.902 16 C -0.153 4.153 17 C 0.175 3.825 18 N -0.592 5.592 19 C -0.256 4.256 20 H 0.067 0.933 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.905 3.095 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.148 3.852 28 C -0.128 4.128 29 C -0.108 4.108 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.022 0.978 42 H 0.094 0.906 43 H 0.255 0.745 44 H 0.021 0.979 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.032 22.168 -14.437 26.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.132 4.132 5 C -0.142 4.142 6 C -0.049 4.049 7 C -0.102 4.102 8 H 0.147 0.853 9 C -0.178 4.178 10 C -0.171 4.171 11 H 0.153 0.847 12 C 0.331 3.669 13 O -0.396 6.396 14 O -0.270 6.270 15 C 0.044 3.956 16 C -0.193 4.193 17 C 0.049 3.951 18 N -0.315 5.315 19 C -0.385 4.385 20 H 0.085 0.915 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.734 3.266 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.208 1.208 27 C 0.021 3.979 28 C -0.167 4.167 29 C -0.126 4.126 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.112 0.888 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.340 21.724 -14.496 26.329 hybrid contribution -0.069 -0.306 0.996 1.044 sum -3.409 21.418 -13.500 25.546 Atomic orbital electron populations 1.20809 0.91074 1.02825 1.02537 1.19924 0.96184 0.93018 0.99295 1.21051 0.94325 0.97490 1.01369 1.21098 0.94283 0.97871 0.99920 1.21060 1.00079 0.91888 1.01212 1.19062 0.93319 0.92733 0.99771 1.21179 0.92047 0.97203 0.99783 0.85299 1.23205 0.95389 1.04076 0.95122 1.21869 1.07786 0.93567 0.93871 0.84700 1.22353 0.76717 0.90063 0.77781 1.90653 1.43348 1.49300 1.56344 1.86513 1.60058 1.33506 1.46882 1.22958 0.98014 0.77039 0.97558 1.22669 0.96470 1.02600 0.97559 1.20776 0.87770 0.87217 0.99375 1.44121 1.00936 1.70194 1.16251 1.19146 1.02035 1.23573 0.93777 0.91500 1.25069 0.98960 0.96944 0.98665 1.70025 1.14844 1.35566 1.34201 0.86339 0.77126 0.77860 0.85258 1.20970 1.21607 1.20813 1.20885 0.92935 0.90466 0.93581 1.22234 0.93432 1.00627 1.00414 1.20912 0.93311 0.97939 1.00449 0.91009 0.91551 0.91381 0.86153 0.85953 0.85772 0.87418 0.86909 0.90365 0.91688 0.92808 0.95967 0.88777 0.93455 0.96115 0.91767 0.92273 0.91114 0.85741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.08 -0.73 5.88 -104.62 -0.62 -1.34 16 3 C -0.12 -0.99 9.70 -39.58 -0.38 -1.37 16 4 C -0.11 -0.89 10.05 -39.58 -0.40 -1.28 16 5 C -0.12 -1.05 9.30 -39.58 -0.37 -1.42 16 6 C -0.05 -0.48 5.61 -104.62 -0.59 -1.06 16 7 C -0.08 -0.87 5.55 -91.78 -0.51 -1.38 16 8 H 0.13 1.46 7.67 -51.93 -0.40 1.07 16 9 C -0.14 -1.25 9.56 -26.73 -0.26 -1.51 16 10 C -0.15 -1.74 5.93 -91.77 -0.54 -2.29 16 11 H 0.14 1.39 8.14 -51.93 -0.42 0.97 16 12 C 0.49 7.72 7.71 36.01 0.28 8.00 16 13 O -0.51 -9.40 15.48 -18.74 -0.29 -9.69 16 14 O -0.35 -6.06 9.88 -39.24 -0.39 -6.45 16 15 C 0.10 1.86 2.41 -26.69 -0.06 1.80 16 16 C -0.15 -3.20 5.72 -26.61 -0.15 -3.35 16 17 C 0.17 4.31 5.31 -3.71 -0.02 4.29 16 18 N -0.59 -15.03 2.99 -172.31 -0.52 -15.55 16 19 C -0.26 -7.03 9.59 -15.06 -0.14 -7.17 16 20 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 21 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 22 N -0.90 -26.37 11.19 55.49 0.62 -25.75 16 23 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.15 3.12 6.51 -3.71 -0.02 3.09 16 28 C -0.13 -2.31 5.74 -26.61 -0.15 -2.47 16 29 C -0.11 -1.05 9.39 -39.58 -0.37 -1.42 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 34 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.12 0.83 6.02 -52.48 -0.32 0.51 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.11 0.73 6.18 -51.92 -0.32 0.41 16 38 H 0.08 1.57 7.16 -51.93 -0.37 1.20 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 2.57 6.04 -51.93 -0.31 2.25 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 1.29 7.94 -51.93 -0.41 0.87 16 46 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 47 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 390.16 15.07 5.88 5.88 Total: -1.00 -31.57 390.16 -11.36 -42.93 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.59 Total: 1.25 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -4.04 Total: -9.30 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.10 Total: -41.30 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.68 Total: -16.14 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.57 -11.36 -42.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089669413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.506 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds