Wall clock time and date at job start Tue Mar 31 2020 05:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38257 * 119.99681 * 2 1 4 4 C 1.38213 * 120.00239 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99686 * 359.97438 * 4 3 2 6 6 C 1.38212 * 120.00220 * 0.08730 * 5 4 3 7 7 C 1.50702 * 119.99978 * 179.97438 * 6 5 4 8 8 H 1.09001 * 115.54544 * 205.60703 * 7 6 5 9 9 C 1.52995 * 117.50154 * 351.30958 * 7 6 5 10 10 C 1.52990 * 117.49981 * 59.93593 * 7 6 5 11 11 H 1.08996 * 117.50137 * 0.02562 * 10 7 6 12 12 C 1.50708 * 117.50006 * 145.02004 * 10 7 6 13 13 O 1.20817 * 119.99573 * 359.97438 * 12 10 7 14 14 O 1.34223 * 119.99752 * 179.97438 * 12 10 7 15 15 C 1.45210 * 116.99703 * 179.97438 * 14 12 10 16 16 C 1.53040 * 109.45866 * 270.07138 * 15 14 12 17 17 C 1.53199 * 109.30758 * 178.61322 * 16 15 14 18 18 N 1.46927 * 108.77411 * 54.63670 * 17 16 15 19 19 C 1.36938 * 120.63145 * 126.41410 * 18 17 16 20 20 H 1.07990 * 119.99776 * 207.66175 * 19 18 17 21 21 C 1.38814 * 119.99827 * 27.65502 * 19 18 17 22 22 N 1.31619 * 119.99746 * 17.37445 * 21 19 18 23 23 Si 1.86793 * 119.99936 * 197.36754 * 21 19 18 24 24 H 1.48500 * 109.47462 * 60.00317 * 23 21 19 25 25 H 1.48502 * 109.47377 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47377 * 300.00367 * 23 21 19 27 27 C 1.46925 * 118.73855 * 306.38430 * 18 17 16 28 28 C 1.53036 * 109.45839 * 150.00113 * 15 14 12 29 29 C 1.38212 * 120.00467 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47177 * 269.97650 * 1 2 3 31 31 H 1.08996 * 109.47111 * 29.98079 * 1 2 3 32 32 H 1.09002 * 109.46694 * 149.98049 * 1 2 3 33 33 H 1.08006 * 120.00366 * 359.97438 * 3 2 1 34 34 H 1.07994 * 120.00669 * 179.97438 * 4 3 2 35 35 H 1.08003 * 120.00124 * 179.97438 * 5 4 3 36 36 H 1.09001 * 117.50255 * 214.97959 * 9 7 6 37 37 H 1.09010 * 117.49717 * 0.02562 * 9 7 6 38 38 H 1.08998 * 109.45490 * 30.03215 * 15 14 12 39 39 H 1.09000 * 109.49736 * 298.56211 * 16 15 14 40 40 H 1.09000 * 109.49809 * 58.66557 * 16 15 14 41 41 H 1.08997 * 109.58471 * 294.84545 * 17 16 15 42 42 H 1.09006 * 109.58096 * 174.42173 * 17 16 15 43 43 H 0.97005 * 119.99257 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.58978 * 293.83013 * 27 18 17 45 45 H 1.08999 * 109.70286 * 173.46569 * 27 18 17 46 46 H 1.09008 * 109.49926 * 301.34010 * 28 15 14 47 47 H 1.08995 * 109.49993 * 61.43731 * 28 15 14 48 48 H 1.07995 * 119.99490 * 359.69589 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 3.5807 -1.1968 -0.0018 7 6 4.3343 -2.5019 -0.0024 8 1 3.8016 -3.3521 -0.4284 9 6 5.8495 -2.4427 -0.2066 10 6 5.2757 -2.7745 1.1724 11 1 5.3497 -2.0103 1.9459 12 6 5.3960 -4.1983 1.6518 13 8 4.7614 -5.0731 1.1117 14 8 6.2080 -4.4942 2.6787 15 6 6.2737 -5.8861 3.0872 16 6 5.2083 -6.1557 4.1523 17 6 5.2576 -7.6328 4.5556 18 7 6.6266 -7.9633 4.9743 19 6 6.8631 -8.5425 6.1923 20 1 7.8088 -8.3865 6.6899 21 6 5.8872 -9.3301 6.7875 22 7 4.8932 -9.8033 6.0662 23 14 5.9849 -9.7185 8.6120 24 1 5.9490 -8.4541 9.3899 25 1 4.8322 -10.5711 8.9991 26 1 7.2513 -10.4395 8.8976 27 6 7.7371 -7.6609 4.0609 28 6 7.6600 -6.1835 3.6631 29 6 2.1982 -1.1969 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6582 2.1327 -0.0004 34 1 4.1203 2.1328 -0.0010 35 1 5.3517 0.0002 -0.0014 36 1 6.3139 -3.2540 -0.7670 37 1 6.3013 -1.4596 -0.3401 38 1 6.0941 -6.5267 2.2238 39 1 5.4017 -5.5334 5.0260 40 1 4.2231 -5.9214 3.7490 41 1 4.9757 -8.2534 3.7050 42 1 4.5699 -7.8088 5.3829 43 1 4.2114 -10.3540 6.4821 44 1 7.6574 -8.2838 3.1699 45 1 8.6865 -7.8560 4.5595 46 1 8.4199 -5.9689 2.9116 47 1 7.8303 -5.5610 4.5414 48 1 1.6582 -2.1321 0.0040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089669413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:34 Heat of formation + Delta-G solvation = -39.347335 kcal Electronic energy + Delta-G solvation = -27231.273035 eV Core-core repulsion = 23444.420946 eV Total energy + Delta-G solvation = -3786.852089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.90681 -40.60472 -39.28975 -37.94117 -37.06271 -34.61997 -33.41130 -32.17536 -31.79101 -31.53044 -27.86677 -27.46166 -26.10209 -24.58244 -24.00760 -23.68631 -22.98211 -21.56116 -21.04930 -20.51736 -19.00575 -18.89829 -17.88589 -17.52558 -16.95589 -16.85059 -16.20554 -15.93659 -15.75067 -15.45143 -15.05248 -14.98771 -14.76736 -14.62934 -14.50731 -14.22755 -14.03129 -13.62444 -13.29527 -13.21003 -13.09213 -13.02081 -12.94116 -12.82622 -12.59746 -12.42567 -12.27270 -12.15841 -12.00928 -11.91856 -11.87819 -11.75412 -11.57610 -11.50320 -11.38963 -11.10400 -10.57185 -9.67082 -9.44781 -8.79321 -7.92085 -5.38174 0.32337 0.48153 1.03034 1.46546 1.49283 1.55871 1.57116 2.49262 2.56342 2.99699 3.23798 3.40504 3.51061 3.57211 3.69684 3.75661 3.83699 3.89096 3.98853 4.06800 4.12330 4.16826 4.24322 4.34532 4.50114 4.52045 4.53036 4.66102 4.68888 4.76841 4.80841 4.84086 4.86091 4.90332 4.92767 4.99850 5.01791 5.03507 5.15413 5.21571 5.30941 5.33550 5.48103 5.58261 5.60056 5.62828 5.66892 5.71242 6.12286 6.33643 6.68010 7.07850 7.77546 8.30528 9.15641 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.002172 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.413912 B =12886.693951 C =13652.433831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.096 4.096 3 C -0.130 4.130 4 C -0.116 4.116 5 C -0.128 4.128 6 C -0.062 4.062 7 C -0.085 4.085 8 H 0.109 0.891 9 C -0.116 4.116 10 C -0.162 4.162 11 H 0.151 0.849 12 C 0.484 3.516 13 O -0.541 6.541 14 O -0.349 6.349 15 C 0.104 3.896 16 C -0.140 4.140 17 C 0.184 3.816 18 N -0.611 5.611 19 C -0.265 4.265 20 H 0.075 0.925 21 C -0.053 4.053 22 N -0.938 5.938 23 Si 0.972 3.028 24 H -0.277 1.277 25 H -0.296 1.296 26 H -0.272 1.272 27 C 0.143 3.857 28 C -0.114 4.114 29 C -0.131 4.131 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.107 0.893 37 H 0.146 0.854 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.052 0.948 41 H -0.004 1.004 42 H 0.063 0.937 43 H 0.251 0.749 44 H 0.018 0.982 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 25.194 -14.716 29.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.134 4.134 5 C -0.146 4.146 6 C -0.062 4.062 7 C -0.103 4.103 8 H 0.127 0.873 9 C -0.152 4.152 10 C -0.181 4.181 11 H 0.169 0.831 12 C 0.329 3.671 13 O -0.432 6.432 14 O -0.265 6.265 15 C 0.050 3.950 16 C -0.179 4.179 17 C 0.058 3.942 18 N -0.334 5.334 19 C -0.395 4.395 20 H 0.093 0.907 21 C -0.249 4.249 22 N -0.584 5.584 23 Si 0.799 3.201 24 H -0.203 1.203 25 H -0.222 1.222 26 H -0.197 1.197 27 C 0.018 3.982 28 C -0.153 4.153 29 C -0.149 4.149 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.126 0.874 37 H 0.164 0.836 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.014 0.986 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.036 0.964 45 H 0.094 0.906 46 H 0.112 0.888 47 H 0.091 0.909 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.696 24.779 -14.792 28.908 hybrid contribution -0.599 -1.208 0.985 1.670 sum -2.295 23.570 -13.807 27.413 Atomic orbital electron populations 1.20842 0.89987 1.03532 1.02853 1.20191 0.97231 0.93004 0.99150 1.21383 0.94855 0.97954 1.00596 1.21457 0.94400 0.98715 0.98831 1.21312 1.01188 0.91431 1.00634 1.19092 0.93290 0.92908 1.00927 1.21110 0.93103 0.97129 0.98988 0.87259 1.23406 0.94102 1.05616 0.92088 1.21946 1.10084 0.90717 0.95338 0.83100 1.23269 0.75442 0.91620 0.76743 1.90646 1.44515 1.50779 1.57224 1.86525 1.60552 1.31786 1.47636 1.22662 0.97829 0.78206 0.96295 1.22417 0.97473 0.99706 0.98330 1.20475 0.87427 0.89238 0.97093 1.44376 1.01916 1.70400 1.16718 1.19536 1.02232 1.22972 0.94769 0.90745 1.25891 0.98882 0.97313 1.02767 1.70192 1.15698 1.36669 1.35806 0.85278 0.77059 0.77624 0.80115 1.20306 1.22195 1.19718 1.21064 0.91986 0.92436 0.92762 1.22048 0.93637 0.98180 1.01401 1.21044 0.93844 0.98294 1.01745 0.90823 0.90064 0.91499 0.84147 0.83455 0.83694 0.87417 0.83631 0.91759 0.91602 0.92912 0.98572 0.91876 0.94006 0.96414 0.90586 0.88846 0.90855 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 10.01 71.24 0.71 -0.70 16 2 C -0.10 -1.57 5.88 -19.87 -0.12 -1.68 16 3 C -0.13 -1.78 9.70 22.27 0.22 -1.56 16 4 C -0.12 -1.47 10.05 22.27 0.22 -1.24 16 5 C -0.13 -1.81 9.30 22.27 0.21 -1.61 16 6 C -0.06 -1.14 5.61 -19.87 -0.11 -1.25 16 7 C -0.09 -1.69 5.55 -11.54 -0.06 -1.75 16 8 H 0.11 2.58 7.67 -2.39 -0.02 2.57 16 9 C -0.12 -1.75 9.56 30.59 0.29 -1.46 16 10 C -0.16 -3.46 5.93 -11.54 -0.07 -3.53 16 11 H 0.15 2.74 8.14 -2.39 -0.02 2.72 16 12 C 0.48 15.06 7.71 71.24 0.55 15.61 16 13 O -0.54 -20.42 15.48 21.99 0.34 -20.08 16 14 O -0.35 -11.54 9.88 -51.35 -0.51 -12.05 16 15 C 0.10 3.92 2.41 30.62 0.07 3.99 16 16 C -0.14 -5.94 5.72 30.67 0.18 -5.76 16 17 C 0.18 9.44 5.31 86.36 0.46 9.90 16 18 N -0.61 -31.38 2.99 -699.08 -2.09 -33.47 16 19 C -0.27 -14.65 9.59 84.03 0.81 -13.84 16 20 H 0.07 3.92 7.89 -2.92 -0.02 3.89 16 21 C -0.05 -3.01 4.91 84.86 0.42 -2.59 16 22 N -0.94 -56.64 11.19 21.65 0.24 -56.40 16 23 Si 0.97 45.08 29.59 68.60 2.03 47.11 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 27 C 0.14 5.92 6.51 86.36 0.56 6.48 16 28 C -0.11 -3.91 5.74 30.67 0.18 -3.74 16 29 C -0.13 -2.55 9.39 22.27 0.21 -2.34 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 32 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 33 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 34 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 35 H 0.15 1.34 6.02 -2.91 -0.02 1.32 16 36 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.15 1.25 6.18 -2.38 -0.01 1.24 16 38 H 0.06 2.61 7.16 -2.39 -0.02 2.59 16 39 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.06 3.61 6.04 -2.38 -0.01 3.60 16 43 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 2.94 7.94 -2.39 -0.02 2.92 16 46 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 47 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 48 H 0.12 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -70.01 390.16 5.67 -64.34 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.94 Total: 17.62 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 4.72 Total: -7.08 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -1.85 Total: -89.87 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.17 Total: -32.12 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -70.01 5.67 -64.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089669413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.989 kcal (2) G-P(sol) polarization free energy of solvation -70.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds