Wall clock time and date at job start Tue Mar 31 2020 05:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38253 * 119.99850 * 2 1 4 4 C 1.38212 * 119.99687 * 179.72796 * 3 2 1 5 5 C 1.38251 * 120.00080 * 0.27390 * 4 3 2 6 6 C 1.38212 * 120.00012 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.99967 * 179.97438 * 6 5 4 8 8 H 1.08996 * 115.55331 * 154.32474 * 7 6 5 9 9 C 1.52999 * 117.49773 * 8.61166 * 7 6 5 10 10 C 1.52994 * 60.00059 * 252.51495 * 9 7 6 11 11 H 1.09001 * 117.49803 * 107.49661 * 10 9 7 12 12 C 1.50703 * 117.51877 * 252.51606 * 10 9 7 13 13 O 1.20821 * 119.99706 * 68.63624 * 12 10 9 14 14 O 1.34227 * 120.00464 * 248.63230 * 12 10 9 15 15 C 1.45197 * 117.00163 * 180.02562 * 14 12 10 16 16 C 1.53035 * 109.45787 * 270.02617 * 15 14 12 17 17 C 1.53202 * 109.31097 * 178.60211 * 16 15 14 18 18 N 1.46925 * 108.76462 * 54.65558 * 17 16 15 19 19 C 1.36932 * 120.63199 * 126.40310 * 18 17 16 20 20 H 1.08006 * 120.00241 * 331.83050 * 19 18 17 21 21 C 1.38811 * 120.00006 * 151.81706 * 19 18 17 22 22 N 1.31619 * 120.00262 * 343.08865 * 21 19 18 23 23 Si 1.86806 * 119.99868 * 163.08364 * 21 19 18 24 24 H 1.48505 * 109.47058 * 60.00449 * 23 21 19 25 25 H 1.48498 * 109.47388 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47160 * 300.00397 * 23 21 19 27 27 C 1.46927 * 118.73808 * 306.38401 * 18 17 16 28 28 C 1.53045 * 109.45674 * 149.97367 * 15 14 12 29 29 C 1.38211 * 119.99869 * 180.19772 * 2 1 3 30 30 H 1.09003 * 109.47693 * 89.99578 * 1 2 3 31 31 H 1.09001 * 109.47153 * 209.99975 * 1 2 3 32 32 H 1.09001 * 109.47061 * 329.99177 * 1 2 3 33 33 H 1.08007 * 120.00246 * 0.02562 * 3 2 1 34 34 H 1.08009 * 119.99687 * 180.26327 * 4 3 2 35 35 H 1.08004 * 119.99854 * 179.97438 * 5 4 3 36 36 H 1.08998 * 117.50099 * 0.02562 * 9 7 6 37 37 H 1.09006 * 117.49668 * 145.02084 * 9 7 6 38 38 H 1.08993 * 109.45857 * 30.00350 * 15 14 12 39 39 H 1.08998 * 109.50259 * 298.56166 * 16 15 14 40 40 H 1.08994 * 109.49783 * 58.66249 * 16 15 14 41 41 H 1.08994 * 109.59544 * 294.86729 * 17 16 15 42 42 H 1.08998 * 109.70168 * 174.50360 * 17 16 15 43 43 H 0.97005 * 119.99780 * 179.97438 * 22 21 19 44 44 H 1.08995 * 109.58743 * 293.82045 * 27 18 17 45 45 H 1.09003 * 109.70358 * 173.46338 * 27 18 17 46 46 H 1.09002 * 109.49864 * 301.33473 * 28 15 14 47 47 H 1.08993 * 109.50299 * 61.43800 * 28 15 14 48 48 H 1.07999 * 120.00425 * 0.03435 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1973 0.0057 5 6 4.2716 0.0000 0.0056 6 6 3.5805 -1.1969 0.0005 7 6 4.3341 -2.5021 -0.0002 8 1 3.8002 -3.3534 0.4221 9 6 5.8487 -2.4434 0.2082 10 6 5.2787 -2.7717 -1.1731 11 1 5.3553 -2.0052 -1.9443 12 6 5.3999 -4.1941 -1.6562 13 8 4.7638 -5.0704 -1.1202 14 8 6.2143 -4.4874 -2.6820 15 6 6.2807 -5.8781 -3.0942 16 6 7.3885 -6.5889 -2.3135 17 6 7.4325 -8.0638 -2.7256 18 7 7.5776 -8.1425 -4.1855 19 6 8.5879 -8.8762 -4.7477 20 1 9.5139 -9.0204 -4.2108 21 6 8.4219 -9.4348 -6.0075 22 7 7.2159 -9.5536 -6.5211 23 14 9.9103 -10.0180 -6.9741 24 1 10.6182 -11.0725 -6.2045 25 1 9.4675 -10.5703 -8.2795 26 1 10.8285 -8.8743 -7.2069 27 6 6.6178 -7.4194 -5.0308 28 6 6.5828 -5.9518 -4.5928 29 6 2.1980 -1.1969 -0.0041 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5140 33 1 1.6582 2.1327 0.0004 34 1 4.1203 2.1327 0.0100 35 1 5.3516 0.0000 0.0097 36 1 6.3000 -1.4610 0.3462 37 1 6.3115 -3.2563 0.7680 38 1 5.3256 -6.3627 -2.8921 39 1 8.3476 -6.1205 -2.5347 40 1 7.1851 -6.5157 -1.2452 41 1 6.5079 -8.5555 -2.4232 42 1 8.2804 -8.5539 -2.2471 43 1 7.1000 -9.9437 -7.4017 44 1 5.6268 -7.8586 -4.9165 45 1 6.9270 -7.4819 -6.0742 46 1 5.8058 -5.4251 -5.1469 47 1 7.5495 -5.4895 -4.7922 48 1 1.6581 -2.1323 -0.0079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089669415.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:43 Heat of formation + Delta-G solvation = -25.789208 kcal Electronic energy + Delta-G solvation = -27153.804801 eV Core-core repulsion = 23367.540637 eV Total energy + Delta-G solvation = -3786.264165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.72640 -39.80005 -37.90558 -36.73966 -35.67821 -32.86482 -32.68116 -31.18541 -30.37436 -29.65567 -27.25736 -25.96642 -24.62105 -23.85157 -22.48546 -22.28974 -21.91710 -20.43943 -19.75883 -19.29183 -17.91736 -17.01520 -16.95355 -16.32282 -15.70617 -15.46081 -15.25447 -14.84224 -14.35181 -14.18534 -14.08565 -13.60128 -13.58520 -13.42396 -13.12138 -12.86966 -12.67816 -12.62420 -12.50505 -12.43266 -12.16916 -11.64304 -11.53249 -11.26800 -11.23903 -11.11860 -10.94836 -10.77361 -10.74408 -10.73486 -10.46288 -10.25764 -10.19225 -9.90121 -9.67213 -9.45271 -9.05156 -8.82836 -8.50086 -6.73999 -5.82646 -3.25467 0.96083 1.08386 2.20731 2.77813 3.30139 3.37781 3.43350 3.44706 3.73591 4.21599 4.39886 4.47235 4.48653 4.56496 4.61214 4.79766 4.83256 4.97084 5.02530 5.12287 5.25214 5.27001 5.32464 5.35600 5.39812 5.41936 5.49763 5.52460 5.64049 5.69528 5.73363 5.77080 5.84002 5.99591 6.16313 6.22038 6.27559 6.32567 6.37123 6.40370 6.50017 6.57722 6.69693 6.71452 6.85296 6.95396 7.27479 7.57018 7.76478 7.97697 8.40852 9.16689 9.79431 10.36252 11.26575 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.029501 B = 0.001977 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.904282 B =14157.377977 C =14376.069633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.113 4.113 5 C -0.124 4.124 6 C -0.049 4.049 7 C -0.084 4.084 8 H 0.129 0.871 9 C -0.141 4.141 10 C -0.152 4.152 11 H 0.135 0.865 12 C 0.488 3.512 13 O -0.510 6.510 14 O -0.352 6.352 15 C 0.098 3.902 16 C -0.145 4.145 17 C 0.149 3.851 18 N -0.592 5.592 19 C -0.255 4.255 20 H 0.067 0.933 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.905 3.095 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.174 3.826 28 C -0.135 4.135 29 C -0.108 4.108 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.021 0.979 42 H 0.061 0.939 43 H 0.256 0.744 44 H 0.022 0.978 45 H 0.097 0.903 46 H 0.057 0.943 47 H 0.067 0.933 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.193 22.056 13.815 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.131 4.131 5 C -0.142 4.142 6 C -0.049 4.049 7 C -0.102 4.102 8 H 0.147 0.853 9 C -0.177 4.177 10 C -0.171 4.171 11 H 0.153 0.847 12 C 0.331 3.669 13 O -0.399 6.399 14 O -0.268 6.268 15 C 0.044 3.956 16 C -0.185 4.185 17 C 0.022 3.978 18 N -0.315 5.315 19 C -0.384 4.384 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.548 5.548 23 Si 0.735 3.265 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.048 3.952 28 C -0.175 4.175 29 C -0.126 4.126 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.040 0.960 45 H 0.115 0.885 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.407 21.646 13.771 27.326 hybrid contribution 0.690 -0.388 -0.612 1.000 sum -8.717 21.258 13.159 26.477 Atomic orbital electron populations 1.20807 0.91085 1.02826 1.02503 1.19919 0.96170 0.93024 0.99346 1.21051 0.94328 0.97492 1.01365 1.21104 0.94283 0.97889 0.99868 1.21068 1.00117 0.91886 1.01143 1.19064 0.93311 0.92743 0.99757 1.21179 0.92059 0.97180 0.99822 0.85321 1.23205 0.95339 1.04143 0.95037 1.21870 1.07781 0.93607 0.93884 0.84709 1.22373 0.76379 0.90011 0.78131 1.90642 1.43992 1.49264 1.55982 1.86540 1.59765 1.33538 1.46963 1.22977 1.00014 0.76338 0.96234 1.22460 0.98413 0.99420 0.98198 1.20861 0.99090 0.91314 0.86515 1.44105 1.33115 1.55187 0.99080 1.19148 0.92684 1.25907 1.00692 0.91561 1.25075 0.96290 0.98398 0.99848 1.70011 1.19726 1.47282 1.17744 0.86333 0.82347 0.78552 0.79313 1.20831 1.21601 1.20953 1.20812 0.92414 0.84578 0.97411 1.22467 1.01550 1.02200 0.91273 1.20901 0.93302 0.97906 1.00536 0.91036 0.91400 0.91546 0.86149 0.85935 0.85744 0.86890 0.87381 0.90334 0.91333 0.92737 0.96063 0.92062 0.93450 0.95986 0.88532 0.92386 0.91429 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.01 36.01 0.36 -0.34 16 2 C -0.08 -0.70 5.88 -104.63 -0.62 -1.32 16 3 C -0.12 -0.96 9.70 -39.59 -0.38 -1.34 16 4 C -0.11 -0.86 10.05 -39.59 -0.40 -1.26 16 5 C -0.12 -1.03 9.30 -39.59 -0.37 -1.40 16 6 C -0.05 -0.46 5.61 -104.62 -0.59 -1.05 16 7 C -0.08 -0.85 5.55 -91.77 -0.51 -1.36 16 8 H 0.13 1.42 7.67 -51.93 -0.40 1.02 16 9 C -0.14 -1.25 9.56 -26.73 -0.26 -1.51 16 10 C -0.15 -1.72 5.93 -91.77 -0.54 -2.27 16 11 H 0.14 1.36 8.14 -51.93 -0.42 0.94 16 12 C 0.49 7.60 7.71 36.01 0.28 7.88 16 13 O -0.51 -9.19 15.48 -18.75 -0.29 -9.48 16 14 O -0.35 -6.04 9.88 -39.25 -0.39 -6.42 16 15 C 0.10 1.86 2.42 -26.69 -0.06 1.80 16 16 C -0.15 -2.76 5.72 -26.61 -0.15 -2.91 16 17 C 0.15 3.23 6.52 -3.71 -0.02 3.20 16 18 N -0.59 -15.00 2.99 -172.31 -0.52 -15.51 16 19 C -0.25 -6.99 9.58 -15.06 -0.14 -7.13 16 20 H 0.07 1.78 7.89 -52.48 -0.41 1.36 16 21 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 22 N -0.90 -26.11 11.19 55.49 0.62 -25.48 16 23 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16 28 C -0.14 -2.70 5.74 -26.61 -0.15 -2.85 16 29 C -0.11 -1.01 9.39 -39.59 -0.37 -1.38 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 32 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 33 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 34 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 35 H 0.12 0.82 6.02 -52.48 -0.32 0.51 16 36 H 0.11 0.75 6.18 -51.93 -0.32 0.43 16 37 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.59 7.15 -51.93 -0.37 1.21 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.10 2.55 6.07 -51.93 -0.31 2.23 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 390.19 15.07 5.88 5.88 Total: -1.00 -31.18 390.19 -11.36 -42.54 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.60 Total: 1.03 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -4.04 Total: -9.09 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.11 Total: -41.00 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.68 Total: -15.91 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.18 -11.36 -42.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089669415.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.747 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds