Wall clock time and date at job start Tue Mar 31 2020 05:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 120.00368 * 2 1 4 4 C 1.38207 * 119.99934 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00229 * 0.02562 * 4 3 2 6 6 C 1.38220 * 119.99985 * 0.08591 * 5 4 3 7 7 C 1.50702 * 119.99955 * 179.97438 * 6 5 4 8 8 H 1.09004 * 115.54415 * 205.60269 * 7 6 5 9 9 C 1.53003 * 117.49925 * 351.30545 * 7 6 5 10 10 C 1.52994 * 117.49974 * 59.93083 * 7 6 5 11 11 H 1.09001 * 117.49876 * 145.00029 * 10 7 6 12 12 C 1.50695 * 117.50189 * 0.02562 * 10 7 6 13 13 O 1.20826 * 119.99899 * 359.97438 * 12 10 7 14 14 O 1.34233 * 120.00206 * 180.02562 * 12 10 7 15 15 C 1.45196 * 117.00103 * 179.97438 * 14 12 10 16 16 C 1.53043 * 109.46503 * 270.02888 * 15 14 12 17 17 C 1.53190 * 109.31467 * 178.60243 * 16 15 14 18 18 N 1.46927 * 108.76637 * 54.65453 * 17 16 15 19 19 C 1.36928 * 120.62831 * 126.36549 * 18 17 16 20 20 H 1.08004 * 119.99826 * 207.98150 * 19 18 17 21 21 C 1.38812 * 120.00499 * 27.98120 * 19 18 17 22 22 N 1.31613 * 120.00038 * 17.50280 * 21 19 18 23 23 Si 1.86803 * 120.00233 * 197.50522 * 21 19 18 24 24 H 1.48502 * 109.47241 * 94.06133 * 23 21 19 25 25 H 1.48499 * 109.47167 * 214.06624 * 23 21 19 26 26 H 1.48503 * 109.46838 * 334.06648 * 23 21 19 27 27 C 1.46925 * 118.73487 * 306.38071 * 18 17 16 28 28 C 1.53043 * 109.46118 * 149.97193 * 15 14 12 29 29 C 1.38218 * 119.99591 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47075 * 89.99730 * 1 2 3 31 31 H 1.09002 * 109.47477 * 210.00182 * 1 2 3 32 32 H 1.09004 * 109.46612 * 330.00467 * 1 2 3 33 33 H 1.07996 * 119.99918 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.00132 * 179.72045 * 4 3 2 35 35 H 1.07997 * 120.00295 * 180.02562 * 5 4 3 36 36 H 1.08992 * 117.49825 * 214.98098 * 9 7 6 37 37 H 1.08998 * 117.49951 * 0.02562 * 9 7 6 38 38 H 1.09005 * 109.46073 * 30.00276 * 15 14 12 39 39 H 1.09000 * 109.49306 * 298.57029 * 16 15 14 40 40 H 1.09006 * 109.49385 * 58.66104 * 16 15 14 41 41 H 1.09006 * 109.59572 * 294.86328 * 17 16 15 42 42 H 1.08995 * 109.58659 * 174.43743 * 17 16 15 43 43 H 0.96997 * 120.00447 * 180.02562 * 22 21 19 44 44 H 1.08992 * 109.59182 * 293.82356 * 27 18 17 45 45 H 1.09001 * 109.58146 * 173.39693 * 27 18 17 46 46 H 1.09000 * 109.49446 * 301.34038 * 28 15 14 47 47 H 1.08998 * 109.49293 * 61.40490 * 28 15 14 48 48 H 1.08007 * 120.00041 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 3.5805 -1.1972 -0.0018 7 6 4.3340 -2.5023 -0.0024 8 1 3.8015 -3.3523 -0.4291 9 6 5.8494 -2.4431 -0.2055 10 6 5.2746 -2.7756 1.1730 11 1 5.3609 -3.8054 1.5196 12 6 5.3763 -1.7193 2.2430 13 8 4.7289 -0.7032 2.1522 14 8 6.1868 -1.9069 3.2964 15 6 6.2350 -0.8473 4.2879 16 6 7.3335 0.1508 3.9147 17 6 7.3581 1.2854 4.9437 18 7 7.5022 0.7037 6.2852 19 6 8.5032 1.1193 7.1219 20 1 8.8993 0.4448 7.8668 21 6 9.0092 2.4073 7.0130 22 7 8.3262 3.3303 6.3697 23 14 10.6594 2.8306 7.7792 24 1 11.7303 2.6831 6.7611 25 1 10.6324 4.2319 8.2699 26 1 10.9273 1.9131 8.9158 27 6 6.5518 -0.3324 6.7116 28 6 6.5360 -1.4488 5.6627 29 6 2.1980 -1.1971 -0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.6585 2.1326 -0.0004 34 1 4.1205 2.1324 -0.0040 35 1 5.3517 -0.0003 0.0014 36 1 6.3140 -3.2543 -0.7659 37 1 6.3014 -1.4602 -0.3383 38 1 5.2736 -0.3346 4.3186 39 1 8.2985 -0.3559 3.9083 40 1 7.1311 0.5614 2.9254 41 1 6.4272 1.8497 4.8880 42 1 8.2009 1.9457 4.7394 43 1 8.6799 4.2303 6.2932 44 1 5.5552 0.0999 6.8002 45 1 6.8625 -0.7396 7.6738 46 1 5.7659 -2.1768 5.9177 47 1 7.5084 -1.9407 5.6395 48 1 1.6579 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089669417.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:51 Heat of formation + Delta-G solvation = -12.777907 kcal Electronic energy + Delta-G solvation = -28428.102122 eV Core-core repulsion = 24642.402170 eV Total energy + Delta-G solvation = -3785.699952 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.83243 -39.35359 -37.75385 -36.62877 -35.54600 -32.73653 -32.46488 -30.82680 -30.28738 -29.70767 -26.91392 -25.89838 -24.53425 -23.73247 -22.29963 -22.19223 -21.88511 -20.47083 -19.52300 -19.20049 -17.82642 -17.01614 -16.64111 -15.87560 -15.73717 -15.26550 -14.88969 -14.62818 -14.47009 -14.03048 -13.81618 -13.63586 -13.48186 -13.18304 -13.07547 -12.79848 -12.68873 -12.50244 -12.32593 -12.31155 -11.98905 -11.52795 -11.33327 -11.16565 -11.06269 -11.01773 -10.76486 -10.74783 -10.69088 -10.62350 -10.32562 -10.19588 -10.13120 -9.90972 -9.66897 -9.39418 -8.62610 -8.49461 -8.15579 -6.73999 -5.81920 -3.24855 1.37979 1.55708 2.33681 2.86408 3.36967 3.43911 3.45370 3.52533 3.96525 4.32282 4.47320 4.55436 4.61153 4.81474 4.92617 4.97099 5.04561 5.16494 5.25767 5.33599 5.36607 5.38750 5.44496 5.45934 5.50994 5.52950 5.60641 5.74793 5.75417 5.75962 5.81598 6.02659 6.14055 6.20509 6.21055 6.31776 6.47809 6.51904 6.58609 6.59560 6.66614 6.69312 6.72577 6.88677 6.99321 7.14312 7.30228 7.59837 7.77366 8.08585 8.41068 9.16997 9.80019 10.36656 11.27005 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.016646 B = 0.002903 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.635025 B = 9643.166739 C =10304.668136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.059 4.059 6 C -0.052 4.052 7 C -0.081 4.081 8 H 0.125 0.875 9 C -0.145 4.145 10 C -0.157 4.157 11 H 0.136 0.864 12 C 0.479 3.521 13 O -0.486 6.486 14 O -0.357 6.357 15 C 0.100 3.900 16 C -0.151 4.151 17 C 0.176 3.824 18 N -0.592 5.592 19 C -0.255 4.255 20 H 0.068 0.932 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.904 3.096 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.148 3.852 28 C -0.128 4.128 29 C -0.110 4.110 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.022 0.978 42 H 0.092 0.908 43 H 0.255 0.745 44 H 0.021 0.979 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.959 -11.935 -15.860 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.135 4.135 4 C -0.138 4.138 5 C -0.078 4.078 6 C -0.052 4.052 7 C -0.099 4.099 8 H 0.142 0.858 9 C -0.182 4.182 10 C -0.176 4.176 11 H 0.154 0.846 12 C 0.321 3.679 13 O -0.374 6.374 14 O -0.274 6.274 15 C 0.046 3.954 16 C -0.191 4.191 17 C 0.050 3.950 18 N -0.315 5.315 19 C -0.385 4.385 20 H 0.085 0.915 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.734 3.266 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.203 1.203 27 C 0.022 3.978 28 C -0.167 4.167 29 C -0.128 4.128 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.110 0.890 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.094 -11.415 -15.828 22.448 hybrid contribution 0.896 0.347 0.557 1.110 sum -10.198 -11.069 -15.271 21.441 Atomic orbital electron populations 1.20731 0.91611 1.02516 1.01791 1.19731 0.95643 0.93156 1.01454 1.20937 0.94282 0.97200 1.01107 1.20989 0.94225 0.97868 1.00672 1.20717 0.99172 0.91874 0.95987 1.18796 0.93116 0.92540 1.00718 1.21177 0.91826 0.97700 0.99169 0.85761 1.23213 0.95563 1.04396 0.95024 1.21856 1.08178 0.99283 0.88278 0.84643 1.22458 0.76814 0.86439 0.82186 1.90757 1.42494 1.28606 1.75513 1.86505 1.60239 1.48595 1.32053 1.22890 1.00436 0.86268 0.85780 1.22642 0.97704 0.98400 1.00332 1.20749 1.01266 0.91238 0.81777 1.44124 1.31745 1.43465 1.12171 1.19209 1.10147 0.94737 1.14399 0.91454 1.25069 0.99323 0.95166 1.00033 1.70036 1.36471 1.01997 1.46044 0.86254 0.84082 0.77422 0.78886 1.21428 1.21744 1.20325 1.20885 0.93295 0.88938 0.94730 1.22224 1.01759 0.99588 0.93137 1.20626 0.93049 0.97268 1.01900 0.91635 0.91889 0.91783 0.86647 0.86421 0.87085 0.86813 0.87592 0.90423 0.91812 0.92967 0.96027 0.88951 0.93545 0.96134 0.91822 0.92366 0.91199 0.86717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.10 -1.19 5.88 -104.62 -0.62 -1.80 16 3 C -0.12 -1.48 9.70 -39.59 -0.38 -1.86 16 4 C -0.12 -1.62 10.05 -39.59 -0.40 -2.02 16 5 C -0.06 -0.81 6.18 -39.58 -0.24 -1.06 16 6 C -0.05 -0.64 4.37 -104.62 -0.46 -1.10 16 7 C -0.08 -0.79 6.04 -91.77 -0.55 -1.34 16 8 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 9 C -0.15 -1.29 9.58 -26.73 -0.26 -1.55 16 10 C -0.16 -1.71 6.30 -91.77 -0.58 -2.29 16 11 H 0.14 1.19 8.14 -51.93 -0.42 0.76 16 12 C 0.48 7.38 7.58 36.00 0.27 7.65 16 13 O -0.49 -8.58 10.93 -18.75 -0.20 -8.79 16 14 O -0.36 -6.06 9.88 -39.26 -0.39 -6.45 16 15 C 0.10 1.89 2.42 -26.69 -0.06 1.82 16 16 C -0.15 -3.11 5.72 -26.61 -0.15 -3.26 16 17 C 0.18 4.32 5.31 -3.71 -0.02 4.30 16 18 N -0.59 -15.03 2.99 -172.33 -0.52 -15.55 16 19 C -0.26 -7.02 9.58 -15.06 -0.14 -7.17 16 20 H 0.07 1.81 7.89 -52.48 -0.41 1.39 16 21 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 22 N -0.90 -26.30 11.22 55.49 0.62 -25.68 16 23 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 28 C -0.13 -2.33 5.74 -26.61 -0.15 -2.49 16 29 C -0.11 -1.31 9.39 -39.58 -0.37 -1.69 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.11 1.50 5.78 -52.49 -0.30 1.19 16 36 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.11 1.04 6.18 -51.93 -0.32 0.72 16 38 H 0.08 1.58 7.16 -51.93 -0.37 1.21 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 2.51 6.06 -51.93 -0.31 2.19 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.11 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 382.26 15.07 5.76 5.76 Total: -1.00 -31.60 382.26 -11.23 -42.83 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.61 Total: 2.57 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -3.87 Total: -11.36 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.11 Total: -41.23 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.59 Total: -15.24 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.60 -11.23 -42.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089669417.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.055 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds