Wall clock time and date at job start Tue Mar 31 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99907 * 2 1 4 4 H 1.48500 * 109.47187 * 270.00395 * 3 2 1 5 5 H 1.48503 * 109.47167 * 29.99898 * 3 2 1 6 6 H 1.48498 * 109.47018 * 150.00147 * 3 2 1 7 7 C 1.37876 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99938 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00209 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46776 * 180.02562 * 10 9 7 12 12 S 1.81000 * 109.46804 * 180.02562 * 11 10 9 13 13 C 1.76200 * 99.99837 * 180.02562 * 12 11 10 14 14 N 1.31367 * 126.26626 * 359.97362 * 13 12 11 15 15 N 1.28645 * 109.46426 * 179.78476 * 14 13 12 16 16 C 1.31328 * 109.38817 * 0.38671 * 15 14 13 17 17 C 1.46994 * 126.32046 * 179.87960 * 16 15 14 18 18 C 1.35841 * 125.12337 * 359.71987 * 17 16 15 19 19 C 1.46372 * 106.07151 * 179.97438 * 18 17 16 20 20 C 1.39629 * 134.17766 * 179.97438 * 19 18 17 21 21 C 1.36703 * 119.70849 * 179.97438 * 20 19 18 22 22 C 1.38763 * 120.41543 * 0.02562 * 21 20 19 23 23 C 1.37917 * 120.72442 * 0.02562 * 22 21 20 24 24 C 1.38890 * 119.86032 * 359.97438 * 23 22 21 25 25 O 1.34854 * 125.12594 * 179.71194 * 17 16 15 26 26 O 1.34691 * 126.26153 * 179.97438 * 13 12 11 27 27 H 0.96994 * 120.00196 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46572 * 60.00494 * 9 7 2 29 29 H 1.08995 * 109.47411 * 300.00811 * 9 7 2 30 30 H 1.09002 * 109.46719 * 60.00308 * 10 9 7 31 31 H 1.08998 * 109.47059 * 300.00119 * 10 9 7 32 32 H 1.08999 * 109.46971 * 60.00399 * 11 10 9 33 33 H 1.08998 * 109.47196 * 299.99756 * 11 10 9 34 34 H 1.08000 * 126.96422 * 359.96807 * 18 17 16 35 35 H 1.07998 * 120.14469 * 0.02562 * 20 19 18 36 36 H 1.07993 * 119.79185 * 180.02562 * 21 20 19 37 37 H 1.07993 * 119.63795 * 179.97438 * 22 21 20 38 38 H 1.07995 * 120.06460 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5516 -2.6365 0.0001 12 16 6.1549 -4.3430 -0.0005 13 6 7.8929 -4.0530 0.0005 14 7 8.4851 -2.8803 0.0009 15 7 9.7610 -3.0444 0.0061 16 6 10.0354 -4.3287 0.0009 17 6 11.3755 -4.9327 0.0017 18 6 12.5446 -4.2409 0.0026 19 6 13.6096 -5.2449 0.0038 20 6 15.0046 -5.1838 0.0046 21 6 15.7334 -6.3403 0.0062 22 6 15.0955 -7.5727 0.0065 23 6 13.7187 -7.6535 0.0046 24 6 12.9578 -6.4915 0.0030 25 8 11.6297 -6.2571 0.0018 26 8 8.8574 -4.9931 0.0009 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6797 0.8895 29 1 3.8746 -0.6807 -0.8904 30 1 3.6579 -3.1505 -0.8897 31 1 3.6586 -3.1502 0.8903 32 1 5.9148 -2.1226 0.8901 33 1 5.9149 -2.1227 -0.8899 34 1 12.6640 -3.1675 0.0024 35 1 15.5055 -4.2270 0.0048 36 1 16.8124 -6.2946 0.0072 37 1 15.6836 -8.4784 0.0073 38 1 13.2334 -8.6182 0.0044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089873084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:39 Heat of formation + Delta-G solvation = 67.968360 kcal Electronic energy + Delta-G solvation = -22945.402521 eV Core-core repulsion = 19268.864761 eV Total energy + Delta-G solvation = -3676.537760 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.082 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.33617 -42.97038 -38.45512 -36.53122 -34.79982 -33.88542 -32.25137 -32.08971 -31.00680 -29.46245 -28.20281 -25.42427 -24.47200 -23.38725 -23.15920 -22.33698 -21.72751 -20.43986 -18.96281 -18.03883 -17.95337 -17.84729 -16.75964 -16.62069 -16.46930 -16.20279 -14.99940 -14.97633 -14.87907 -14.52942 -14.05569 -13.76774 -13.55486 -12.91383 -12.81258 -12.74190 -12.51338 -12.43983 -12.36423 -12.22917 -11.87492 -11.54371 -11.45580 -11.41686 -10.94953 -10.71924 -10.46458 -10.08997 -9.88875 -9.78230 -9.30206 -9.22384 -8.84142 -8.60072 -7.94054 -6.10433 -4.10188 -0.19546 0.34784 0.75057 0.82001 1.59961 1.60005 1.91490 2.28341 2.42118 3.14557 3.28229 3.36320 3.39298 3.76882 4.02433 4.25117 4.33162 4.40192 4.52287 4.56255 4.64926 4.72753 4.88318 4.92924 5.09139 5.14835 5.20418 5.24561 5.27208 5.52708 5.67814 5.77294 5.78452 5.87760 6.03381 6.17296 6.28098 6.50894 6.63067 7.12007 7.24883 7.68534 7.77315 8.44376 8.92912 9.50834 11.02573 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.039756 B = 0.001774 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.118887 B =15782.182315 C =16460.551748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.525 4.525 8 H 0.074 0.926 9 C -0.005 4.005 10 C -0.090 4.090 11 C -0.112 4.112 12 S 0.066 5.934 13 C 0.155 3.845 14 N -0.282 5.282 15 N -0.232 5.232 16 C 0.216 3.784 17 C 0.097 3.903 18 C -0.114 4.114 19 C -0.137 4.137 20 C -0.058 4.058 21 C -0.136 4.136 22 C -0.082 4.082 23 C -0.108 4.108 24 C 0.071 3.929 25 O -0.182 6.182 26 O -0.197 6.197 27 H 0.264 0.736 28 H 0.021 0.979 29 H 0.017 0.983 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.177 0.823 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.407 -14.938 0.028 35.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.092 0.908 9 C -0.044 4.044 10 C -0.130 4.130 11 C -0.261 4.261 12 S 0.299 5.701 13 C -0.160 4.160 14 N -0.136 5.136 15 N -0.083 5.083 16 C 0.005 3.995 17 C 0.048 3.952 18 C -0.136 4.136 19 C -0.138 4.138 20 C -0.076 4.076 21 C -0.154 4.154 22 C -0.100 4.100 23 C -0.127 4.127 24 C 0.023 3.977 25 O -0.083 6.083 26 O -0.078 6.078 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.195 0.805 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 31.528 -14.805 0.034 34.831 hybrid contribution 0.865 0.824 -0.024 1.195 sum 32.392 -13.981 0.010 35.281 Atomic orbital electron populations 1.69903 1.06306 1.27045 1.50618 1.25003 0.94737 0.99183 0.94358 0.86797 0.80420 0.83575 0.78645 1.20188 1.21286 1.18865 1.21056 0.89043 0.94679 1.51558 0.90819 1.19563 0.97365 0.90502 0.96987 1.21397 0.86919 1.01791 1.02881 1.24251 1.02359 0.91747 1.07712 1.86284 0.79722 1.14946 1.89148 1.30476 0.99551 0.84808 1.01147 1.75109 0.98144 1.20144 1.20174 1.74606 1.07247 1.11864 1.14558 1.23574 0.83882 0.87070 1.04991 1.17516 0.87642 0.81173 1.08835 1.22632 0.87984 1.00525 1.02494 1.19830 0.94713 0.91974 1.07310 1.20403 0.90630 0.99515 0.97101 1.20857 1.00534 0.91936 1.02120 1.21059 0.92702 0.98612 0.97675 1.20030 0.92656 0.95358 1.04617 1.19674 0.80024 0.96088 1.01920 1.84039 1.24157 1.23372 1.76717 1.85125 1.14230 1.37745 1.70679 0.92600 0.96024 0.96468 0.91218 0.91200 0.88114 0.88126 0.80539 0.84813 0.84847 0.84317 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.53 -14.44 9.66 -34.44 -0.33 -14.77 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 10 C -0.09 -1.60 5.16 -26.73 -0.14 -1.74 16 11 C -0.11 -1.69 5.22 37.16 0.19 -1.50 16 12 S 0.07 0.90 22.31 -107.50 -2.40 -1.50 16 13 C 0.15 2.32 8.53 52.56 0.45 2.77 16 14 N -0.28 -4.55 11.62 30.34 0.35 -4.20 16 15 N -0.23 -3.53 12.20 31.96 0.39 -3.14 16 16 C 0.22 3.03 8.25 -14.22 -0.12 2.91 16 17 C 0.10 1.16 7.15 -36.89 -0.26 0.89 16 18 C -0.11 -1.10 11.02 -37.17 -0.41 -1.51 16 19 C -0.14 -1.22 6.38 -105.19 -0.67 -1.89 16 20 C -0.06 -0.37 10.06 -39.62 -0.40 -0.76 16 21 C -0.14 -0.67 9.98 -39.94 -0.40 -1.07 16 22 C -0.08 -0.41 10.01 -39.50 -0.40 -0.80 16 23 C -0.11 -0.75 10.07 -39.46 -0.40 -1.14 16 24 C 0.07 0.69 7.40 -38.42 -0.28 0.40 16 25 O -0.18 -2.15 10.60 2.62 0.03 -2.12 16 26 O -0.20 -2.91 10.92 1.99 0.02 -2.89 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 29 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.10 1.50 8.14 -51.92 -0.42 1.08 16 33 H 0.10 1.49 8.14 -51.92 -0.42 1.07 16 34 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.13 0.31 8.06 -52.49 -0.42 -0.11 16 37 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 38 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 352.16 15.07 5.31 5.31 Total: -1.00 -31.86 352.16 -7.73 -39.59 By element: Atomic # 1 Polarization: -0.45 SS G_CDS: -4.16 Total: -4.61 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -3.37 Total: -16.55 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 1.52 Total: -33.82 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: 0.05 Total: -5.01 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.40 Total: -1.50 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.86 -7.73 -39.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089873084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.560 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds