Wall clock time and date at job start Tue Mar 31 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99907 * 2 1 4 4 H 1.48500 * 109.47187 * 270.00395 * 3 2 1 5 5 H 1.48503 * 109.47167 * 29.99898 * 3 2 1 6 6 H 1.48498 * 109.47018 * 150.00147 * 3 2 1 7 7 C 1.37876 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99938 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00209 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46776 * 180.02562 * 10 9 7 12 12 S 1.81000 * 109.46804 * 180.02562 * 11 10 9 13 13 C 1.76200 * 99.99837 * 180.02562 * 12 11 10 14 14 N 1.31367 * 126.26626 * 359.97362 * 13 12 11 15 15 N 1.28645 * 109.46426 * 179.78476 * 14 13 12 16 16 C 1.31328 * 109.38817 * 0.38671 * 15 14 13 17 17 C 1.46994 * 126.32046 * 179.87960 * 16 15 14 18 18 C 1.35841 * 125.12337 * 359.71987 * 17 16 15 19 19 C 1.46372 * 106.07151 * 179.97438 * 18 17 16 20 20 C 1.39629 * 134.17766 * 179.97438 * 19 18 17 21 21 C 1.36703 * 119.70849 * 179.97438 * 20 19 18 22 22 C 1.38763 * 120.41543 * 0.02562 * 21 20 19 23 23 C 1.37917 * 120.72442 * 0.02562 * 22 21 20 24 24 C 1.38890 * 119.86032 * 359.97438 * 23 22 21 25 25 O 1.34854 * 125.12594 * 179.71194 * 17 16 15 26 26 O 1.34691 * 126.26153 * 179.97438 * 13 12 11 27 27 H 0.96994 * 120.00196 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46572 * 60.00494 * 9 7 2 29 29 H 1.08995 * 109.47411 * 300.00811 * 9 7 2 30 30 H 1.09002 * 109.46719 * 60.00308 * 10 9 7 31 31 H 1.08998 * 109.47059 * 300.00119 * 10 9 7 32 32 H 1.08999 * 109.46971 * 60.00399 * 11 10 9 33 33 H 1.08998 * 109.47196 * 299.99756 * 11 10 9 34 34 H 1.08000 * 126.96422 * 359.96807 * 18 17 16 35 35 H 1.07998 * 120.14469 * 0.02562 * 20 19 18 36 36 H 1.07993 * 119.79185 * 180.02562 * 21 20 19 37 37 H 1.07993 * 119.63795 * 179.97438 * 22 21 20 38 38 H 1.07995 * 120.06460 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6366 0.0001 11 6 5.5516 -2.6365 0.0001 12 16 6.1549 -4.3430 -0.0005 13 6 7.8929 -4.0530 0.0005 14 7 8.4851 -2.8803 0.0009 15 7 9.7610 -3.0444 0.0061 16 6 10.0354 -4.3287 0.0009 17 6 11.3755 -4.9327 0.0017 18 6 12.5446 -4.2409 0.0026 19 6 13.6096 -5.2449 0.0038 20 6 15.0046 -5.1838 0.0046 21 6 15.7334 -6.3403 0.0062 22 6 15.0955 -7.5727 0.0065 23 6 13.7187 -7.6535 0.0046 24 6 12.9578 -6.4915 0.0030 25 8 11.6297 -6.2571 0.0018 26 8 8.8574 -4.9931 0.0009 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6797 0.8895 29 1 3.8746 -0.6807 -0.8904 30 1 3.6579 -3.1505 -0.8897 31 1 3.6586 -3.1502 0.8903 32 1 5.9148 -2.1226 0.8901 33 1 5.9149 -2.1227 -0.8899 34 1 12.6640 -3.1675 0.0024 35 1 15.5055 -4.2270 0.0048 36 1 16.8124 -6.2946 0.0072 37 1 15.6836 -8.4784 0.0073 38 1 13.2334 -8.6182 0.0044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089873084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:39 Heat of formation + Delta-G solvation = 46.412790 kcal Electronic energy + Delta-G solvation = -22946.337241 eV Core-core repulsion = 19268.864761 eV Total energy + Delta-G solvation = -3677.472480 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.43324 -43.65711 -38.96151 -37.65149 -36.46615 -34.68881 -34.19829 -32.96826 -31.51030 -30.35184 -29.85278 -26.35766 -25.52555 -25.00723 -23.87732 -23.00686 -22.48555 -22.09329 -20.00574 -19.09039 -18.93595 -18.69099 -18.55026 -17.40200 -17.28215 -16.99697 -16.53361 -16.35766 -15.70361 -15.46763 -15.05468 -14.72115 -14.30458 -14.24320 -14.04709 -13.99580 -13.87394 -13.47195 -13.41190 -13.18447 -12.92070 -12.86019 -12.78140 -12.37446 -12.08411 -12.00024 -11.81009 -11.61428 -11.47415 -11.35927 -11.20572 -10.75379 -9.80482 -9.52166 -8.94282 -8.28326 -6.32830 -1.04559 -0.76736 -0.01079 0.27281 0.68032 0.68723 0.84575 1.36755 1.38603 1.40336 1.47743 1.51609 2.37265 2.66539 2.92209 3.07658 3.40229 3.45072 3.52101 3.61946 3.76671 3.85837 3.91261 4.03674 4.11430 4.28490 4.41147 4.42763 4.52911 4.69054 4.72677 4.80065 5.00087 5.00600 5.17505 5.32348 5.41338 5.44312 5.50652 5.51451 5.64437 5.94523 6.27168 6.66400 6.75377 7.31934 8.88076 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.039756 B = 0.001774 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.118887 B =15782.182315 C =16460.551748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.533 4.533 8 H 0.037 0.963 9 C -0.006 4.006 10 C -0.082 4.082 11 C -0.110 4.110 12 S 0.102 5.898 13 C 0.144 3.856 14 N -0.300 5.300 15 N -0.254 5.254 16 C 0.230 3.770 17 C 0.055 3.945 18 C -0.088 4.088 19 C -0.160 4.160 20 C -0.060 4.060 21 C -0.133 4.133 22 C -0.067 4.067 23 C -0.126 4.126 24 C 0.048 3.952 25 O -0.203 6.203 26 O -0.205 6.205 27 H 0.266 0.734 28 H 0.027 0.973 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.193 0.807 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.174 0.826 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.808 -15.262 0.023 39.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.571 4.571 8 H 0.055 0.945 9 C -0.045 4.045 10 C -0.121 4.121 11 C -0.259 4.259 12 S 0.334 5.666 13 C -0.171 4.171 14 N -0.153 5.153 15 N -0.103 5.103 16 C 0.019 3.981 17 C 0.007 3.993 18 C -0.110 4.110 19 C -0.161 4.161 20 C -0.078 4.078 21 C -0.150 4.150 22 C -0.084 4.084 23 C -0.144 4.144 24 C 0.000 4.000 25 O -0.106 6.106 26 O -0.087 6.087 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.210 0.790 35 H 0.175 0.825 36 H 0.185 0.815 37 H 0.191 0.809 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 35.954 -15.127 0.029 39.007 hybrid contribution -0.271 0.706 -0.024 0.756 sum 35.683 -14.421 0.005 38.487 Atomic orbital electron populations 1.70060 1.08296 1.28143 1.52581 1.25972 0.95557 1.03426 0.94149 0.85709 0.79651 0.78421 0.79211 1.19248 1.21219 1.16723 1.21458 0.91913 0.93303 1.50470 0.94474 1.19503 0.93927 0.93682 0.97411 1.21133 0.89012 0.99011 1.02984 1.23993 1.00241 0.93430 1.08229 1.86119 0.78704 1.12649 1.89132 1.30591 1.00033 0.84720 1.01744 1.75021 0.98716 1.20782 1.20806 1.74533 1.06950 1.12394 1.16443 1.23984 0.84348 0.86878 1.02892 1.17535 0.87193 0.81836 1.12770 1.22981 0.87629 1.01376 0.98976 1.20057 0.95804 0.91245 1.08968 1.20792 0.89488 1.01381 0.96125 1.21337 1.02222 0.91245 1.00220 1.21570 0.91942 1.00228 0.94704 1.20416 0.93584 0.95154 1.05294 1.20237 0.79402 0.97590 1.02728 1.83978 1.25645 1.23315 1.77653 1.85118 1.14609 1.37961 1.71019 0.92520 0.95476 0.95606 0.91190 0.91211 0.87717 0.87658 0.78988 0.82540 0.81498 0.80903 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.07 13.96 21.45 0.30 -58.78 16 2 C 0.01 0.34 5.47 84.65 0.46 0.81 16 3 Si 0.95 43.61 27.47 68.60 1.88 45.49 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 7 C -0.53 -29.85 9.66 25.60 0.25 -29.60 16 8 H 0.04 2.27 7.99 -2.91 -0.02 2.25 16 9 C -0.01 -0.25 4.04 29.85 0.12 -0.13 16 10 C -0.08 -2.86 5.16 30.60 0.16 -2.71 16 11 C -0.11 -3.20 5.22 71.98 0.38 -2.82 16 12 S 0.10 2.68 22.31 -56.49 -1.26 1.42 16 13 C 0.14 4.31 8.53 130.31 1.11 5.42 16 14 N -0.30 -9.66 11.62 -171.78 -2.00 -11.66 16 15 N -0.25 -7.79 12.20 -166.36 -2.03 -9.82 16 16 C 0.23 6.59 8.25 87.07 0.72 7.31 16 17 C 0.05 1.34 7.15 24.01 0.17 1.51 16 18 C -0.09 -1.64 11.02 23.83 0.26 -1.38 16 19 C -0.16 -2.63 6.38 -20.23 -0.13 -2.76 16 20 C -0.06 -0.57 10.06 22.25 0.22 -0.35 16 21 C -0.13 -0.76 9.98 22.04 0.22 -0.54 16 22 C -0.07 -0.42 10.01 22.32 0.22 -0.19 16 23 C -0.13 -1.53 10.07 22.35 0.23 -1.30 16 24 C 0.05 0.90 7.40 23.02 0.17 1.07 16 25 O -0.20 -4.98 10.60 -13.55 -0.14 -5.12 16 26 O -0.21 -6.19 10.92 -15.80 -0.17 -6.36 16 27 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 29 H 0.03 1.09 7.57 -2.39 -0.02 1.08 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.10 2.98 8.14 -2.40 -0.02 2.96 16 33 H 0.10 2.98 8.14 -2.40 -0.02 2.96 16 34 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 36 H 0.17 -0.13 8.06 -2.91 -0.02 -0.15 16 37 H 0.17 -0.12 8.06 -2.91 -0.02 -0.14 16 38 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -71.58 352.16 2.18 -69.39 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: 1.04 Total: 1.09 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 4.56 Total: -25.66 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -3.73 Total: -80.26 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.32 Total: -11.48 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.49 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.26 Total: 1.42 kcal Total: -71.58 2.18 -69.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089873084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.806 kcal (2) G-P(sol) polarization free energy of solvation -71.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds