Wall clock time and date at job start Tue Mar 31 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39868 * 120.06647 * 209.27837 * 3 2 1 5 5 C 1.37584 * 119.92843 * 180.30108 * 4 3 2 6 6 C 1.39281 * 120.06974 * 359.44150 * 5 4 3 7 7 S 1.76195 * 119.93070 * 180.25972 * 6 5 4 8 8 C 1.81405 * 103.00168 * 0.29357 * 7 6 5 9 9 C 1.50696 * 109.47224 * 179.97438 * 8 7 6 10 10 O 1.21290 * 119.99956 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99791 * 180.02562 * 9 8 7 12 12 C 1.37095 * 119.99951 * 180.02562 * 11 9 8 13 13 H 1.08000 * 119.99824 * 359.97438 * 12 11 9 14 14 C 1.38952 * 120.00096 * 180.02562 * 12 11 9 15 15 N 1.31404 * 119.99854 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99967 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47112 * 89.99746 * 16 14 12 18 18 H 1.48498 * 109.47070 * 209.99704 * 16 14 12 19 19 H 1.48499 * 109.47098 * 329.99587 * 16 14 12 20 20 C 1.39235 * 120.14067 * 0.55814 * 6 5 4 21 21 C 1.37635 * 120.06983 * 359.72149 * 20 6 5 22 22 C 1.50693 * 120.03621 * 179.97438 * 21 20 6 23 23 F 1.39910 * 109.47152 * 0.02562 * 22 21 20 24 24 F 1.39903 * 109.47163 * 120.02434 * 22 21 20 25 25 F 1.39896 * 109.47389 * 240.02583 * 22 21 20 26 26 H 1.08002 * 120.03260 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.96712 * 179.72142 * 5 4 3 28 28 H 1.08999 * 109.47031 * 300.00663 * 8 7 6 29 29 H 1.09006 * 109.46286 * 60.00034 * 8 7 6 30 30 H 0.96999 * 120.00367 * 0.02562 * 11 9 8 31 31 H 0.97001 * 120.00186 * 179.97438 * 15 14 12 32 32 H 1.07998 * 119.96664 * 179.74847 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 1.0568 0.5920 5 6 4.6441 1.0576 0.5849 6 6 5.3395 0.0025 -0.0007 7 16 7.1015 0.0039 -0.0016 8 6 7.5088 1.5457 0.8630 9 6 9.0061 1.6947 0.9459 10 8 9.7275 0.8447 0.4682 11 7 9.5436 2.7725 1.5508 12 6 10.9058 2.9084 1.6257 13 1 11.5481 2.1515 1.2003 14 6 11.4599 4.0193 2.2498 15 7 10.6783 4.9400 2.7677 16 14 13.3159 4.2040 2.3525 17 1 13.8070 4.9389 1.1592 18 1 13.6709 4.9602 3.5802 19 1 13.9453 2.8598 2.3997 20 6 4.6454 -1.0504 -0.5908 21 6 3.2691 -1.0543 -0.5921 22 6 2.5186 -2.1939 -1.2315 23 9 3.4302 -3.1194 -1.7510 24 9 1.7146 -2.8193 -0.2724 25 9 1.7143 -1.7013 -2.2646 26 1 2.7295 1.8730 1.0502 27 1 5.1854 1.8750 1.0379 28 1 7.0888 2.3904 0.3169 29 1 7.0904 1.5193 1.8692 30 1 8.9667 3.4522 1.9331 31 1 11.0651 5.7153 3.2037 32 1 5.1875 -1.8652 -1.0476 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096007249.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:18 Heat of formation + Delta-G solvation = -128.388850 kcal Electronic energy + Delta-G solvation = -23886.752452 eV Core-core repulsion = 19524.010169 eV Total energy + Delta-G solvation = -4362.742283 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 330.039 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.50757 -48.01628 -47.96095 -39.93737 -38.37636 -36.78812 -34.22893 -32.86987 -31.91575 -31.56052 -29.61327 -26.66524 -24.99302 -24.41895 -22.64829 -20.02427 -19.66577 -18.82832 -18.79347 -18.64829 -18.15110 -16.75069 -16.13380 -16.02449 -15.12090 -15.03912 -14.87799 -14.81942 -14.62491 -14.54466 -14.42617 -14.28774 -14.11597 -14.09977 -14.02023 -13.40957 -13.24293 -13.10396 -13.06203 -12.68451 -12.27854 -12.23972 -11.77370 -11.62925 -11.20609 -10.53771 -10.41094 -10.24546 -10.19325 -9.81555 -9.74261 -8.81428 -8.23019 -7.55007 -6.63323 -4.05319 -0.01399 0.57527 1.21337 2.21300 2.25376 2.30075 2.38761 3.03824 3.16381 3.17913 3.21593 3.23110 3.41874 3.55936 3.62091 3.99777 4.03139 4.29152 4.55518 4.58818 4.75339 4.83409 4.96196 5.21611 5.32291 5.32624 5.34242 5.58805 5.61145 5.93588 6.01692 7.05494 7.35876 7.78580 8.30795 8.92996 9.24018 9.72147 10.53464 Molecular weight = 330.04amu Principal moments of inertia in cm(-1) A = 0.029447 B = 0.002319 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.620261 B =12071.295829 C =12842.119838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C 0.241 3.759 3 C -0.004 4.004 4 C -0.041 4.041 5 C -0.115 4.115 6 C -0.075 4.075 7 S 0.017 5.983 8 C -0.145 4.145 9 C 0.448 3.552 10 O -0.579 6.579 11 N -0.546 5.546 12 C -0.305 4.305 13 H 0.107 0.893 14 C 0.027 3.973 15 N -0.895 5.895 16 Si 0.933 3.067 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.267 1.267 20 C -0.060 4.060 21 C -0.119 4.119 22 C 0.506 3.494 23 F -0.169 7.169 24 F -0.172 7.172 25 F -0.172 7.172 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.395 0.605 31 H 0.275 0.725 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.885 -7.349 -4.110 17.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.068 5.068 2 C -0.074 4.074 3 C -0.012 4.012 4 C -0.063 4.063 5 C -0.140 4.140 6 C -0.190 4.190 7 S 0.267 5.733 8 C -0.296 4.296 9 C 0.232 3.768 10 O -0.464 6.464 11 N -0.181 5.181 12 C -0.434 4.434 13 H 0.125 0.875 14 C -0.176 4.176 15 N -0.535 5.535 16 Si 0.760 3.240 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.192 1.192 20 C -0.084 4.084 21 C -0.125 4.125 22 C 0.451 3.549 23 F -0.150 7.150 24 F -0.153 7.153 25 F -0.153 7.153 26 H 0.165 0.835 27 H 0.164 0.836 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.228 0.772 31 H 0.085 0.915 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.131 -8.521 -4.763 18.007 hybrid contribution -0.147 1.474 0.818 1.692 sum -15.278 -7.047 -3.945 17.282 Atomic orbital electron populations 1.81248 1.11634 1.06461 1.07442 1.25499 0.92509 0.94837 0.94590 1.15519 0.84456 0.96908 1.04324 1.21083 0.93777 0.96060 0.95416 1.21445 0.94190 0.98402 1.00005 1.22788 1.01477 0.96379 0.98347 1.86527 0.91039 1.27097 1.68655 1.23951 1.02007 0.99291 1.04384 1.18770 0.86546 0.85328 0.86156 1.90588 1.61086 1.42685 1.52076 1.41749 1.08091 1.19225 1.49011 1.19755 0.81392 1.06984 1.35294 0.87518 1.25324 1.00912 0.95204 0.96122 1.69594 1.36097 1.10774 1.37043 0.85801 0.81596 0.78791 0.77839 1.20160 1.20737 1.19190 1.20473 0.91067 0.98519 0.98368 1.19794 0.94483 0.94748 1.03460 1.18214 0.77621 0.82267 0.76755 1.93207 1.66483 1.68038 1.87322 1.93251 1.74607 1.83854 1.63620 1.93249 1.74584 1.87526 1.59971 0.83462 0.83563 0.87436 0.87437 0.77157 0.91494 0.82783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.04 18.54 41.84 0.78 -4.26 16 2 C 0.24 2.63 13.18 -22.47 -0.30 2.33 16 3 C 0.00 -0.04 5.72 -106.77 -0.61 -0.65 16 4 C -0.04 -0.31 9.75 -39.21 -0.38 -0.69 16 5 C -0.12 -0.95 9.34 -39.43 -0.37 -1.32 16 6 C -0.07 -0.75 6.13 -38.82 -0.24 -0.99 16 7 S 0.02 0.22 21.06 -107.50 -2.26 -2.04 16 8 C -0.14 -2.03 4.81 36.00 0.17 -1.86 16 9 C 0.45 9.32 7.80 -10.99 -0.09 9.24 16 10 O -0.58 -14.28 15.44 5.55 0.09 -14.20 16 11 N -0.55 -12.38 5.29 -10.96 -0.06 -12.44 16 12 C -0.30 -7.82 9.68 -14.93 -0.14 -7.97 16 13 H 0.11 2.89 7.16 -52.49 -0.38 2.51 16 14 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 15 N -0.89 -22.49 13.05 55.50 0.72 -21.77 16 16 Si 0.93 19.61 29.55 -169.99 -5.02 14.59 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 C -0.06 -0.57 9.16 -39.43 -0.36 -0.93 16 21 C -0.12 -1.14 5.40 -104.25 -0.56 -1.70 16 22 C 0.51 5.19 2.89 36.00 0.10 5.29 16 23 F -0.17 -1.67 15.97 2.25 0.04 -1.64 16 24 F -0.17 -1.90 16.52 2.25 0.04 -1.87 16 25 F -0.17 -1.90 16.52 2.25 0.04 -1.87 16 26 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 27 H 0.15 1.01 5.86 -52.49 -0.31 0.70 16 28 H 0.11 1.25 7.73 -51.92 -0.40 0.84 16 29 H 0.11 1.25 7.75 -51.92 -0.40 0.84 16 30 H 0.39 8.38 7.90 -40.82 -0.32 8.06 16 31 H 0.28 6.55 8.31 -40.82 -0.34 6.21 16 32 H 0.15 1.32 7.14 -52.49 -0.37 0.94 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -29.47 322.52 -5.40 -34.87 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -1.74 Total: 4.43 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.87 Total: 1.33 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 1.44 Total: -38.47 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.09 Total: -14.20 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.11 Total: -5.37 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.26 Total: -2.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.47 -5.40 -34.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096007249.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.519 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds