Wall clock time and date at job start Tue Mar 31 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39868 * 120.06647 * 209.27837 * 3 2 1 5 5 C 1.37584 * 119.92843 * 180.30108 * 4 3 2 6 6 C 1.39281 * 120.06974 * 359.44150 * 5 4 3 7 7 S 1.76195 * 119.93070 * 180.25972 * 6 5 4 8 8 C 1.81405 * 103.00168 * 0.29357 * 7 6 5 9 9 C 1.50696 * 109.47224 * 179.97438 * 8 7 6 10 10 O 1.21290 * 119.99956 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99791 * 180.02562 * 9 8 7 12 12 C 1.37095 * 119.99951 * 180.02562 * 11 9 8 13 13 H 1.08000 * 119.99824 * 359.97438 * 12 11 9 14 14 C 1.38952 * 120.00096 * 180.02562 * 12 11 9 15 15 N 1.31404 * 119.99854 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99967 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47112 * 89.99746 * 16 14 12 18 18 H 1.48498 * 109.47070 * 209.99704 * 16 14 12 19 19 H 1.48499 * 109.47098 * 329.99587 * 16 14 12 20 20 C 1.39235 * 120.14067 * 0.55814 * 6 5 4 21 21 C 1.37635 * 120.06983 * 359.72149 * 20 6 5 22 22 C 1.50693 * 120.03621 * 179.97438 * 21 20 6 23 23 F 1.39910 * 109.47152 * 0.02562 * 22 21 20 24 24 F 1.39903 * 109.47163 * 120.02434 * 22 21 20 25 25 F 1.39896 * 109.47389 * 240.02583 * 22 21 20 26 26 H 1.08002 * 120.03260 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.96712 * 179.72142 * 5 4 3 28 28 H 1.08999 * 109.47031 * 300.00663 * 8 7 6 29 29 H 1.09006 * 109.46286 * 60.00034 * 8 7 6 30 30 H 0.96999 * 120.00367 * 0.02562 * 11 9 8 31 31 H 0.97001 * 120.00186 * 179.97438 * 15 14 12 32 32 H 1.07998 * 119.96664 * 179.74847 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 1.0568 0.5920 5 6 4.6441 1.0576 0.5849 6 6 5.3395 0.0025 -0.0007 7 16 7.1015 0.0039 -0.0016 8 6 7.5088 1.5457 0.8630 9 6 9.0061 1.6947 0.9459 10 8 9.7275 0.8447 0.4682 11 7 9.5436 2.7725 1.5508 12 6 10.9058 2.9084 1.6257 13 1 11.5481 2.1515 1.2003 14 6 11.4599 4.0193 2.2498 15 7 10.6783 4.9400 2.7677 16 14 13.3159 4.2040 2.3525 17 1 13.8070 4.9389 1.1592 18 1 13.6709 4.9602 3.5802 19 1 13.9453 2.8598 2.3997 20 6 4.6454 -1.0504 -0.5908 21 6 3.2691 -1.0543 -0.5921 22 6 2.5186 -2.1939 -1.2315 23 9 3.4302 -3.1194 -1.7510 24 9 1.7146 -2.8193 -0.2724 25 9 1.7143 -1.7013 -2.2646 26 1 2.7295 1.8730 1.0502 27 1 5.1854 1.8750 1.0379 28 1 7.0888 2.3904 0.3169 29 1 7.0904 1.5193 1.8692 30 1 8.9667 3.4522 1.9331 31 1 11.0651 5.7153 3.2037 32 1 5.1875 -1.8652 -1.0476 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096007249.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:18 Heat of formation + Delta-G solvation = -145.174468 kcal Electronic energy + Delta-G solvation = -23887.480331 eV Core-core repulsion = 19524.010169 eV Total energy + Delta-G solvation = -4363.470162 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 330.039 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.34127 -48.83882 -48.81784 -40.68578 -40.09304 -37.68144 -36.05354 -33.68885 -33.32131 -32.65527 -30.93268 -27.48960 -26.66542 -25.31720 -23.40838 -21.46684 -20.61189 -20.05133 -19.66797 -19.60354 -19.41939 -18.03825 -17.39230 -16.81677 -16.45572 -16.27134 -15.98380 -15.83743 -15.78000 -15.57205 -15.26932 -15.22740 -15.14733 -14.94270 -14.91045 -14.48485 -14.28103 -14.12152 -14.09896 -13.77783 -13.53945 -13.53260 -13.01386 -12.89659 -12.49059 -12.42651 -12.10636 -11.54560 -11.19992 -11.01900 -10.54998 -10.49086 -10.06381 -8.53100 -8.49704 -5.98242 -0.77673 -0.11334 0.20983 1.31826 1.37984 1.38073 1.43877 1.45525 1.56623 1.60473 1.94721 2.29738 2.40599 2.42550 2.62307 2.82179 3.07941 3.17685 3.20937 3.62260 3.89194 4.02840 4.09757 4.16065 4.19197 4.42040 4.59740 4.61790 4.88893 4.94323 5.34820 5.41126 5.93618 6.21462 6.51780 7.07745 7.46886 8.00891 8.66886 Molecular weight = 330.04amu Principal moments of inertia in cm(-1) A = 0.029447 B = 0.002319 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.620261 B =12071.295829 C =12842.119838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.259 3.741 3 C -0.006 4.006 4 C -0.024 4.024 5 C -0.105 4.105 6 C -0.072 4.072 7 S -0.032 6.032 8 C -0.130 4.130 9 C 0.449 3.551 10 O -0.621 6.621 11 N -0.558 5.558 12 C -0.335 4.335 13 H 0.081 0.919 14 C -0.006 4.006 15 N -0.913 5.913 16 Si 0.989 3.011 17 H -0.271 1.271 18 H -0.272 1.272 19 H -0.273 1.273 20 C -0.058 4.058 21 C -0.121 4.121 22 C 0.505 3.495 23 F -0.168 7.168 24 F -0.178 7.178 25 F -0.178 7.178 26 H 0.180 0.820 27 H 0.168 0.832 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.401 0.599 31 H 0.279 0.721 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.811 -6.384 -3.585 17.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.056 4.056 3 C -0.014 4.014 4 C -0.046 4.046 5 C -0.130 4.130 6 C -0.187 4.187 7 S 0.216 5.784 8 C -0.281 4.281 9 C 0.236 3.764 10 O -0.509 6.509 11 N -0.194 5.194 12 C -0.464 4.464 13 H 0.099 0.901 14 C -0.207 4.207 15 N -0.553 5.553 16 Si 0.813 3.187 17 H -0.197 1.197 18 H -0.196 1.196 19 H -0.198 1.198 20 C -0.082 4.082 21 C -0.127 4.127 22 C 0.450 3.550 23 F -0.149 7.149 24 F -0.159 7.159 25 F -0.159 7.159 26 H 0.198 0.802 27 H 0.186 0.814 28 H 0.158 0.842 29 H 0.157 0.843 30 H 0.236 0.764 31 H 0.089 0.911 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.101 -7.549 -4.236 18.280 hybrid contribution 0.032 1.077 0.600 1.233 sum -16.069 -6.472 -3.636 17.701 Atomic orbital electron populations 1.81271 1.12767 1.07685 1.08752 1.25675 0.92669 0.93752 0.93514 1.15659 0.83634 0.97444 1.04628 1.21387 0.93397 0.95899 0.93937 1.21714 0.94488 0.98019 0.98784 1.22541 0.98976 0.97482 0.99662 1.86749 0.94542 1.27356 1.69740 1.23755 0.96632 1.00724 1.06951 1.19806 0.89431 0.83587 0.83617 1.90567 1.63374 1.43878 1.53062 1.41776 1.07290 1.20265 1.50073 1.19660 0.82920 1.07187 1.36667 0.90080 1.25974 1.04510 0.94661 0.95527 1.69636 1.37342 1.11028 1.37336 0.84979 0.77191 0.78372 0.78178 1.19689 1.19646 1.19790 1.20488 0.90950 0.98633 0.98123 1.19701 0.94344 0.94722 1.03940 1.18324 0.77544 0.82523 0.76570 1.93209 1.66343 1.68079 1.87309 1.93239 1.74856 1.84025 1.63816 1.93237 1.74833 1.87592 1.60271 0.80239 0.81446 0.84238 0.84253 0.76384 0.91105 0.82382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -10.46 18.54 19.00 0.35 -10.11 16 2 C 0.26 5.13 13.18 88.33 1.16 6.30 16 3 C -0.01 -0.10 5.72 -21.26 -0.12 -0.22 16 4 C -0.02 -0.26 9.75 22.51 0.22 -0.04 16 5 C -0.11 -1.31 9.34 22.37 0.21 -1.10 16 6 C -0.07 -1.26 6.13 22.76 0.14 -1.12 16 7 S -0.03 -0.82 21.06 -56.49 -1.19 -2.01 16 8 C -0.13 -3.32 4.81 71.23 0.34 -2.98 16 9 C 0.45 18.47 7.80 87.66 0.68 19.15 16 10 O -0.62 -31.12 15.44 -3.06 -0.05 -31.17 16 11 N -0.56 -25.22 5.29 -306.99 -1.62 -26.84 16 12 C -0.33 -17.44 9.68 84.04 0.81 -16.62 16 13 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 14 C -0.01 -0.28 5.50 84.93 0.47 0.19 16 15 N -0.91 -45.30 13.05 21.66 0.28 -45.02 16 16 Si 0.99 40.04 29.55 68.60 2.03 42.06 16 17 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 C -0.06 -0.99 9.16 22.37 0.20 -0.78 16 21 C -0.12 -2.09 5.40 -19.63 -0.11 -2.20 16 22 C 0.50 9.79 2.89 71.23 0.21 9.99 16 23 F -0.17 -3.18 15.97 44.97 0.72 -2.46 16 24 F -0.18 -3.78 16.52 44.97 0.74 -3.04 16 25 F -0.18 -3.78 16.52 44.97 0.74 -3.04 16 26 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 27 H 0.17 1.42 5.86 -2.91 -0.02 1.40 16 28 H 0.14 2.70 7.73 -2.39 -0.02 2.68 16 29 H 0.14 2.70 7.75 -2.39 -0.02 2.69 16 30 H 0.40 16.72 7.90 -92.71 -0.73 15.99 16 31 H 0.28 13.03 8.31 -92.71 -0.77 12.26 16 32 H 0.16 2.53 7.14 -2.91 -0.02 2.50 16 Total: -1.00 -65.17 322.52 6.73 -58.44 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.50 Total: 12.62 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 4.22 Total: 10.57 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -0.99 Total: -81.97 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.05 Total: -31.17 kcal Atomic # 9 Polarization: -10.74 SS G_CDS: 2.20 Total: -8.54 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.06 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -1.19 Total: -2.01 kcal Total: -65.17 6.73 -58.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096007249.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.731 kcal (2) G-P(sol) polarization free energy of solvation -65.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds