Wall clock time and date at job start Tue Mar 31 2020 05:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86797 * 120.00275 * 2 1 4 4 H 1.48501 * 109.47340 * 240.00406 * 3 2 1 5 5 H 1.48507 * 109.46962 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47089 * 120.00079 * 3 2 1 7 7 C 1.40053 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00266 * 180.02562 * 7 2 1 9 9 C 1.46375 * 119.99770 * 359.97438 * 7 2 1 10 10 O 1.21682 * 120.00502 * 354.49503 * 9 7 2 11 11 N 1.34783 * 119.99752 * 174.49964 * 9 7 2 12 12 C 1.46928 * 120.65546 * 5.46487 * 11 9 7 13 13 C 1.53191 * 108.81090 * 126.07600 * 12 11 9 14 14 C 1.53085 * 109.30874 * 54.98890 * 13 12 11 15 15 C 1.52741 * 109.60185 * 299.17311 * 14 13 12 16 16 C 1.53737 * 109.88193 * 299.34662 * 15 14 13 17 17 C 1.54661 * 105.03787 * 239.38895 * 16 15 14 18 18 C 1.54963 * 102.93020 * 338.07494 * 17 16 15 19 19 N 1.47644 * 109.88492 * 181.45754 * 15 14 13 20 20 C 1.46898 * 110.99937 * 265.08700 * 19 15 14 21 21 C 1.50697 * 109.46828 * 177.48435 * 20 19 15 22 22 C 1.38656 * 120.78764 * 95.32025 * 21 20 19 23 23 C 1.38200 * 119.16430 * 179.74920 * 22 21 20 24 24 N 1.31874 * 120.76239 * 0.24789 * 23 22 21 25 25 C 1.31864 * 121.72880 * 0.02562 * 24 23 22 26 26 C 1.38213 * 120.76407 * 359.97438 * 25 24 23 27 27 C 1.46980 * 120.65621 * 185.48474 * 11 9 7 28 28 H 0.97002 * 119.99592 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.57439 * 245.87581 * 12 11 9 30 30 H 1.08995 * 109.58144 * 6.27556 * 12 11 9 31 31 H 1.09007 * 109.49455 * 174.93467 * 13 12 11 32 32 H 1.09001 * 109.50225 * 294.99911 * 13 12 11 33 33 H 1.09004 * 109.44576 * 179.14265 * 14 13 12 34 34 H 1.08997 * 109.45153 * 59.21484 * 14 13 12 35 35 H 1.09000 * 110.32900 * 120.49921 * 16 15 14 36 36 H 1.09004 * 110.32597 * 358.28203 * 16 15 14 37 37 H 1.08999 * 110.72431 * 219.71049 * 17 16 15 38 38 H 1.09005 * 110.87693 * 96.50495 * 17 16 15 39 39 H 1.08991 * 110.65991 * 278.82680 * 18 17 16 40 40 H 1.09003 * 110.80485 * 155.77745 * 18 17 16 41 41 H 1.09001 * 109.46759 * 57.49203 * 20 19 15 42 42 H 1.08992 * 109.47263 * 297.48835 * 20 19 15 43 43 H 1.07995 * 120.41625 * 0.02562 * 22 21 20 44 44 H 1.07998 * 119.62355 * 180.27509 * 23 22 21 45 45 H 1.08001 * 119.62259 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.41638 * 180.02562 * 26 25 24 47 47 H 1.09003 * 109.58010 * 113.25271 * 27 11 9 48 48 H 1.09001 * 109.57688 * 352.85712 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 0.0006 6 1 3.0946 1.6963 1.2124 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2130 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0625 -2.4830 0.1010 11 7 1.9442 -3.6451 -0.1129 12 6 3.4134 -3.6676 -0.1162 13 6 3.8949 -4.6372 0.9677 14 6 3.2519 -6.0081 0.7425 15 6 1.7324 -5.8825 0.8337 16 6 1.3326 -5.3747 2.2286 17 6 0.4202 -6.4791 2.8115 18 6 -0.0802 -7.2195 1.5455 19 7 1.1072 -7.2077 0.6522 20 6 0.7148 -7.4173 -0.7478 21 6 0.1384 -8.8006 -0.9062 22 6 -1.2311 -9.0097 -0.8485 23 6 -1.7238 -10.2916 -1.0033 24 7 -0.9077 -11.3088 -1.1988 25 6 0.4000 -11.1481 -1.2539 26 6 0.9651 -9.8953 -1.1077 27 6 1.2188 -4.9175 -0.2351 28 1 -0.4849 0.8401 0.0004 29 1 3.7713 -4.0013 -1.0902 30 1 3.7945 -2.6680 0.0924 31 1 4.9797 -4.7312 0.9158 32 1 3.6092 -4.2574 1.9486 33 1 3.6049 -6.7039 1.5037 34 1 3.5267 -6.3801 -0.2445 35 1 0.7854 -4.4355 2.1472 36 1 2.2171 -5.2457 2.8525 37 1 -0.4152 -6.0410 3.3576 38 1 0.9876 -7.1531 3.4534 39 1 -0.9106 -6.6816 1.0885 40 1 -0.3712 -8.2423 1.7848 41 1 1.5894 -7.3125 -1.3898 42 1 -0.0339 -6.6771 -1.0300 43 1 -1.9046 -8.1806 -0.6892 44 1 -2.7895 -10.4622 -0.9641 45 1 1.0369 -12.0053 -1.4152 46 1 2.0368 -9.7700 -1.1542 47 1 1.3907 -5.3425 -1.2241 48 1 0.1523 -4.7453 -0.0898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096071496.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:01 Heat of formation + Delta-G solvation = 13.524947 kcal Electronic energy + Delta-G solvation = -29288.030284 eV Core-core repulsion = 25535.763660 eV Total energy + Delta-G solvation = -3752.266624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.69893 -39.83675 -37.38974 -35.29300 -33.93343 -32.62837 -31.43938 -31.28514 -31.14330 -29.83778 -26.67717 -26.14991 -24.71683 -24.28584 -23.53027 -22.20710 -21.84635 -20.41301 -19.79595 -17.84513 -16.80613 -16.63529 -16.39960 -15.88029 -15.76868 -15.57191 -15.33558 -14.60792 -14.31748 -14.23817 -13.90127 -13.82242 -13.51082 -13.30367 -13.17694 -12.70879 -12.53223 -12.34263 -12.17463 -11.92014 -11.80653 -11.66620 -11.33497 -11.20834 -11.05862 -11.00085 -10.77517 -10.60604 -10.43920 -10.29859 -10.27618 -10.10100 -9.86052 -9.66045 -9.56605 -9.23935 -8.90582 -8.42075 -7.64716 -7.20725 -6.25459 -4.70201 1.04762 1.14297 3.11117 3.16661 3.17852 3.64757 3.99698 4.09575 4.35245 4.48135 4.49759 4.57638 4.67457 4.78956 4.96840 5.03161 5.04871 5.13317 5.27794 5.33974 5.42056 5.45459 5.48738 5.54994 5.63630 5.68330 5.69715 5.71935 5.77654 5.89620 5.94539 6.02934 6.09065 6.11234 6.21162 6.25027 6.28548 6.32442 6.37222 6.47533 6.51489 6.60023 6.62025 6.72999 7.04782 7.07740 7.40359 7.56779 7.86212 8.07823 8.29162 8.96741 9.37352 10.51496 10.69986 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.020192 B = 0.003134 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.384495 B = 8933.164479 C = 9284.795207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.561 3.439 10 O -0.579 6.579 11 N -0.636 5.636 12 C 0.121 3.879 13 C -0.138 4.138 14 C -0.088 4.088 15 C 0.085 3.915 16 C -0.115 4.115 17 C -0.122 4.122 18 C 0.036 3.964 19 N -0.499 5.499 20 C 0.076 3.924 21 C -0.026 4.026 22 C -0.167 4.167 23 C 0.095 3.905 24 N -0.491 5.491 25 C 0.093 3.907 26 C -0.152 4.152 27 C 0.106 3.894 28 H 0.269 0.731 29 H 0.040 0.960 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.132 0.868 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.135 0.865 47 H 0.044 0.956 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.016 -15.868 0.685 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.367 3.633 10 O -0.462 6.462 11 N -0.375 5.375 12 C -0.003 4.003 13 C -0.177 4.177 14 C -0.126 4.126 15 C -0.006 4.006 16 C -0.153 4.153 17 C -0.160 4.160 18 C -0.092 4.092 19 N -0.222 5.222 20 C -0.051 4.051 21 C -0.035 4.035 22 C -0.187 4.187 23 C -0.062 4.062 24 N -0.201 5.201 25 C -0.064 4.064 26 C -0.172 4.172 27 C -0.019 4.019 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.150 0.850 44 H 0.170 0.830 45 H 0.170 0.830 46 H 0.153 0.847 47 H 0.062 0.938 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.162 -16.988 0.758 17.296 hybrid contribution 0.328 2.251 -0.210 2.285 sum 3.490 -14.737 0.548 15.154 Atomic orbital electron populations 1.70002 1.07063 1.27432 1.35166 1.25723 0.94606 1.00283 0.92559 0.86463 0.79885 0.81130 0.79495 1.19241 1.20554 1.19221 1.20946 0.93554 0.89224 1.54349 0.90942 1.18229 0.86861 0.82157 0.76057 1.90587 1.14486 1.86052 1.55057 1.48134 1.04694 1.05336 1.79308 1.21430 0.82392 1.00315 0.96205 1.22052 0.99265 0.95563 1.00788 1.21322 0.93048 0.96876 1.01400 1.21963 0.95275 0.86970 0.96349 1.22425 0.99691 0.98864 0.94323 1.22472 0.99354 0.97454 0.96758 1.23228 0.92260 1.00121 0.93555 1.64893 1.23530 1.29567 1.04217 1.21317 1.00260 0.91720 0.91853 1.20273 0.93245 0.95853 0.94123 1.22132 0.95710 0.98967 1.01884 1.22694 0.99771 0.88285 0.95415 1.67646 1.04977 1.34910 1.12538 1.22732 0.91275 0.96603 0.95782 1.22029 1.01260 0.93097 1.00799 1.21751 0.98573 0.85806 0.95815 0.92032 0.94150 0.88936 0.91745 0.91451 0.91922 0.92546 0.90112 0.91201 0.91283 0.91326 0.93489 0.90642 0.89299 0.92422 0.85007 0.82974 0.82994 0.84750 0.93836 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.49 11.84 55.55 0.66 -21.83 16 2 C 0.09 2.39 5.50 -17.36 -0.10 2.30 16 3 Si 0.91 19.61 29.56 -169.99 -5.02 14.58 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.54 -14.76 8.86 -35.63 -0.32 -15.07 16 8 H 0.07 1.79 5.69 -52.49 -0.30 1.49 16 9 C 0.56 15.33 7.61 -12.98 -0.10 15.23 16 10 O -0.58 -18.07 14.46 5.20 0.08 -18.00 16 11 N -0.64 -13.74 2.67 -174.57 -0.47 -14.21 16 12 C 0.12 2.14 6.31 -3.71 -0.02 2.12 16 13 C -0.14 -1.99 5.84 -26.59 -0.16 -2.15 16 14 C -0.09 -1.22 4.90 -26.82 -0.13 -1.35 16 15 C 0.08 1.29 0.59 -131.00 -0.08 1.21 16 16 C -0.11 -1.84 5.42 -25.47 -0.14 -1.98 16 17 C -0.12 -1.65 7.07 -24.82 -0.18 -1.82 16 18 C 0.04 0.48 5.50 -1.85 -0.01 0.47 16 19 N -0.50 -6.68 4.91 -216.92 -1.06 -7.74 16 20 C 0.08 0.96 3.74 -4.98 -0.02 0.94 16 21 C -0.03 -0.30 4.88 -104.32 -0.51 -0.81 16 22 C -0.17 -1.83 9.20 -39.44 -0.36 -2.19 16 23 C 0.09 1.02 11.18 -17.55 -0.20 0.83 16 24 N -0.49 -5.87 10.36 -13.25 -0.14 -6.01 16 25 C 0.09 0.97 11.18 -17.55 -0.20 0.77 16 26 C -0.15 -1.59 9.84 -39.44 -0.39 -1.98 16 27 C 0.11 1.99 3.67 -3.84 -0.01 1.97 16 28 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.74 5.37 -51.93 -0.28 1.46 16 31 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.07 1.05 6.54 -51.93 -0.34 0.71 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.63 7.58 -51.93 -0.39 1.23 16 36 H 0.07 1.06 6.47 -51.93 -0.34 0.73 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.66 7.92 -51.93 -0.41 0.25 16 40 H 0.08 0.93 7.99 -51.93 -0.41 0.52 16 41 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 42 H 0.06 0.80 6.42 -51.93 -0.33 0.47 16 43 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 44 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 47 H 0.04 0.77 6.13 -51.93 -0.32 0.45 16 48 H 0.08 1.77 6.81 -51.93 -0.35 1.41 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -32.90 370.26 -10.52 -43.42 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.23 Total: 5.73 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -2.91 Total: -1.52 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -1.01 Total: -49.79 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.08 Total: -18.00 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.90 -10.52 -43.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096071496.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.941 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds