Wall clock time and date at job start Tue Mar 31 2020 05:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86803 * 119.99886 * 2 1 4 4 H 1.48496 * 109.47071 * 239.99755 * 3 2 1 5 5 H 1.48491 * 109.47181 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47038 * 120.00214 * 3 2 1 7 7 C 1.40049 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00313 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99497 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00169 * 5.34056 * 9 7 2 11 11 N 1.34779 * 119.99722 * 185.34343 * 9 7 2 12 12 C 1.46916 * 120.65984 * 5.43685 * 11 9 7 13 13 C 1.53193 * 108.85536 * 233.84654 * 12 11 9 14 14 C 1.53081 * 109.30411 * 305.09146 * 13 12 11 15 15 C 1.52765 * 109.55705 * 60.86314 * 14 13 12 16 16 C 1.54107 * 109.60195 * 59.91118 * 15 14 13 17 17 C 1.55190 * 102.94960 * 141.82568 * 16 15 14 18 18 C 1.54923 * 101.67802 * 324.53373 * 17 16 15 19 19 N 1.47183 * 110.11498 * 177.95459 * 15 14 13 20 20 C 1.46897 * 111.00021 * 3.88808 * 19 15 14 21 21 C 1.50695 * 109.47224 * 174.00083 * 20 19 15 22 22 C 1.38649 * 120.79562 * 265.11384 * 21 20 19 23 23 C 1.38200 * 119.16490 * 179.79664 * 22 21 20 24 24 N 1.31869 * 120.76785 * 0.49151 * 23 22 21 25 25 C 1.31877 * 121.72158 * 359.73848 * 24 23 22 26 26 C 1.38205 * 120.76348 * 0.02745 * 25 24 23 27 27 C 1.46989 * 120.65465 * 185.41439 * 11 9 7 28 28 H 0.96995 * 120.00096 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.57604 * 114.03393 * 12 11 9 30 30 H 1.09004 * 109.57404 * 353.65460 * 12 11 9 31 31 H 1.08997 * 109.49585 * 185.13959 * 13 12 11 32 32 H 1.08998 * 109.49570 * 65.04002 * 13 12 11 33 33 H 1.09010 * 109.45725 * 300.84217 * 14 13 12 34 34 H 1.08995 * 109.45996 * 180.89581 * 14 13 12 35 35 H 1.09003 * 110.71791 * 260.19628 * 16 15 14 36 36 H 1.09002 * 110.71625 * 23.28450 * 16 15 14 37 37 H 1.08998 * 110.98363 * 206.43627 * 17 16 15 38 38 H 1.09001 * 110.98627 * 82.62807 * 17 16 15 39 39 H 1.09002 * 110.37212 * 278.10029 * 18 17 16 40 40 H 1.09003 * 110.37158 * 155.76183 * 18 17 16 41 41 H 1.08999 * 109.47466 * 294.00648 * 20 19 15 42 42 H 1.09005 * 109.46866 * 54.00237 * 20 19 15 43 43 H 1.07999 * 120.41292 * 0.02562 * 22 21 20 44 44 H 1.08003 * 119.61891 * 180.20767 * 23 22 21 45 45 H 1.07999 * 119.61621 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.41667 * 179.97438 * 26 25 24 47 47 H 1.09001 * 109.59103 * 7.10288 * 27 11 9 48 48 H 1.09008 * 109.58610 * 246.67148 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6964 -1.2124 5 1 1.2757 2.7464 0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4804 -0.0005 10 8 0.0621 -2.4827 -0.0982 11 7 1.9447 -3.6451 0.1076 12 6 3.3944 -3.6565 0.3453 13 6 4.0660 -4.5140 -0.7320 14 6 3.4262 -5.9047 -0.7435 15 6 1.9388 -5.7806 -1.0692 16 6 1.7656 -5.1249 -2.4531 17 6 0.5629 -5.8983 -3.0562 18 6 0.7958 -7.3247 -2.4984 19 7 1.3212 -7.1151 -1.1317 20 6 2.2893 -8.1604 -0.7738 21 6 1.5879 -9.4925 -0.7052 22 6 1.1148 -9.9843 0.5017 23 6 0.4728 -11.2079 0.5251 24 7 0.3169 -11.9092 -0.5808 25 6 0.7580 -11.4748 -1.7452 26 6 1.4055 -10.2581 -1.8467 27 6 1.2387 -4.9291 -0.0093 28 1 -0.4850 0.8400 0.0004 29 1 3.6000 -4.0789 1.3289 30 1 3.7808 -2.6385 0.2950 31 1 5.1300 -4.6048 -0.5137 32 1 3.9328 -4.0441 -1.7064 33 1 3.5459 -6.3676 0.2361 34 1 3.9129 -6.5221 -1.4984 35 1 1.5308 -4.0654 -2.3511 36 1 2.6602 -5.2635 -3.0601 37 1 0.6026 -5.8938 -4.1454 38 1 -0.3826 -5.4894 -2.6998 39 1 1.5262 -7.8561 -3.1084 40 1 -0.1437 -7.8765 -2.4631 41 1 3.0749 -8.2018 -1.5282 42 1 2.7294 -7.9311 0.1968 43 1 1.2432 -9.4166 1.4114 44 1 0.0984 -11.5965 1.4606 45 1 0.6123 -12.0774 -2.6296 46 1 1.7648 -9.9080 -2.8031 47 1 0.2052 -4.7521 -0.3069 48 1 1.2616 -5.4474 0.9494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096071497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:06 Heat of formation + Delta-G solvation = 16.490495 kcal Electronic energy + Delta-G solvation = -29176.634983 eV Core-core repulsion = 25424.496955 eV Total energy + Delta-G solvation = -3752.138028 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75739 -39.85310 -37.45567 -35.21161 -33.96681 -32.59542 -31.64653 -31.33820 -30.75288 -30.03266 -26.73625 -26.14714 -24.83974 -24.12665 -23.60529 -22.25430 -21.64190 -20.83529 -19.50804 -17.82609 -16.82528 -16.60802 -16.46679 -15.93411 -15.86579 -15.55222 -15.37307 -14.54870 -14.42020 -14.12181 -13.94398 -13.88788 -13.62402 -13.47261 -13.12680 -12.79068 -12.45870 -12.41812 -12.17089 -11.93207 -11.66162 -11.62443 -11.37112 -11.11945 -11.08109 -10.93148 -10.89883 -10.66587 -10.51208 -10.31602 -10.25466 -10.00978 -9.83834 -9.68852 -9.60707 -9.27949 -8.86790 -8.29063 -7.58293 -7.18547 -6.20816 -4.65991 1.00385 1.09990 3.13135 3.18689 3.19873 3.58780 3.95403 4.11796 4.31254 4.45683 4.55568 4.57492 4.69147 4.74629 4.88252 4.95035 4.99935 5.03233 5.19329 5.25410 5.33184 5.35174 5.42385 5.51906 5.57445 5.61755 5.66669 5.75637 5.80542 5.82011 5.87966 5.98595 6.01428 6.11292 6.15338 6.22451 6.30627 6.38208 6.42542 6.49789 6.55810 6.57012 6.72763 6.73463 7.08395 7.15256 7.44068 7.64301 7.82649 8.13071 8.35396 9.00756 9.43814 10.56912 10.75630 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.024821 B = 0.002912 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.825646 B = 9614.418170 C = 9720.190510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.904 3.096 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.561 3.439 10 O -0.576 6.576 11 N -0.640 5.640 12 C 0.120 3.880 13 C -0.134 4.134 14 C -0.125 4.125 15 C 0.093 3.907 16 C -0.125 4.125 17 C -0.131 4.131 18 C 0.046 3.954 19 N -0.511 5.511 20 C 0.084 3.916 21 C -0.027 4.027 22 C -0.153 4.153 23 C 0.096 3.904 24 N -0.491 5.491 25 C 0.095 3.905 26 C -0.168 4.168 27 C 0.148 3.852 28 H 0.269 0.731 29 H 0.040 0.960 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.136 0.864 44 H 0.154 0.846 45 H 0.152 0.848 46 H 0.130 0.870 47 H 0.086 0.914 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.503 -17.088 -3.559 18.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.367 3.633 10 O -0.458 6.458 11 N -0.378 5.378 12 C -0.004 4.004 13 C -0.173 4.173 14 C -0.163 4.163 15 C 0.003 3.997 16 C -0.164 4.164 17 C -0.169 4.169 18 C -0.082 4.082 19 N -0.235 5.235 20 C -0.043 4.043 21 C -0.036 4.036 22 C -0.174 4.174 23 C -0.061 4.061 24 N -0.200 5.200 25 C -0.062 4.062 26 C -0.188 4.188 27 C 0.023 3.977 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.109 0.891 43 H 0.153 0.847 44 H 0.171 0.829 45 H 0.169 0.831 46 H 0.148 0.852 47 H 0.104 0.896 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.796 -17.791 -3.197 18.982 hybrid contribution 1.700 1.561 -0.628 2.391 sum 7.495 -16.230 -3.826 18.282 Atomic orbital electron populations 1.69996 1.07029 1.27381 1.35213 1.25711 0.94583 1.00214 0.92633 0.86488 0.79892 0.81290 0.79427 1.19300 1.20574 1.19278 1.20936 0.93474 0.89306 1.54493 0.91028 1.18200 0.86824 0.82113 0.76141 1.90602 1.14269 1.86066 1.54866 1.48196 1.06575 1.05155 1.77872 1.21413 0.82702 1.00921 0.95387 1.21985 0.98717 0.95327 1.01253 1.22040 0.95239 0.97948 1.01103 1.21942 0.92811 0.88010 0.96971 1.22777 0.97220 1.01897 0.94477 1.22714 0.99916 0.94538 0.99690 1.23098 0.99489 0.97461 0.88133 1.63508 1.33455 1.00874 1.25677 1.21325 0.92887 0.87810 1.02291 1.20287 0.94963 0.95214 0.93110 1.22071 0.99229 0.97248 0.98812 1.22750 0.95188 0.91432 0.96711 1.67656 1.18246 1.35071 0.99062 1.22687 0.94074 0.93800 0.95640 1.22076 1.01494 0.96216 0.99059 1.20885 0.97460 0.84122 0.95227 0.92046 0.94160 0.88848 0.91942 0.91460 0.91630 0.92603 0.89270 0.92175 0.91247 0.90311 0.93973 0.90666 0.93249 0.89071 0.84655 0.82871 0.83060 0.85244 0.89606 0.93988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.64 11.84 55.55 0.66 -21.98 16 2 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 3 Si 0.90 19.68 29.56 -169.99 -5.02 14.66 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.55 -14.83 8.85 -35.63 -0.32 -15.14 16 8 H 0.07 1.77 5.69 -52.49 -0.30 1.47 16 9 C 0.56 15.47 7.45 -12.99 -0.10 15.37 16 10 O -0.58 -18.25 14.48 5.20 0.08 -18.17 16 11 N -0.64 -13.95 2.39 -174.55 -0.42 -14.37 16 12 C 0.12 2.13 6.34 -3.72 -0.02 2.11 16 13 C -0.13 -1.90 5.86 -26.59 -0.16 -2.05 16 14 C -0.12 -1.63 3.34 -26.81 -0.09 -1.72 16 15 C 0.09 1.40 0.86 -131.03 -0.11 1.29 16 16 C -0.13 -1.97 4.76 -24.99 -0.12 -2.09 16 17 C -0.13 -1.83 7.08 -24.56 -0.17 -2.00 16 18 C 0.05 0.57 5.38 -2.25 -0.01 0.55 16 19 N -0.51 -6.85 4.82 -217.61 -1.05 -7.90 16 20 C 0.08 0.92 3.90 -4.98 -0.02 0.91 16 21 C -0.03 -0.29 5.13 -104.32 -0.54 -0.83 16 22 C -0.15 -1.59 9.80 -39.44 -0.39 -1.98 16 23 C 0.10 1.00 11.18 -17.55 -0.20 0.80 16 24 N -0.49 -5.71 10.36 -13.25 -0.14 -5.85 16 25 C 0.09 0.95 11.18 -17.54 -0.20 0.75 16 26 C -0.17 -1.64 8.81 -39.44 -0.35 -1.99 16 27 C 0.15 2.89 5.35 -3.82 -0.02 2.87 16 28 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.75 5.31 -51.93 -0.28 1.48 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.03 7.00 -51.93 -0.36 0.67 16 33 H 0.07 0.81 6.56 -51.92 -0.34 0.47 16 34 H 0.06 0.65 6.77 -51.93 -0.35 0.29 16 35 H 0.09 1.77 7.23 -51.93 -0.38 1.40 16 36 H 0.06 0.85 7.54 -51.93 -0.39 0.46 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.04 0.45 6.57 -51.93 -0.34 0.11 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.51 6.65 -51.93 -0.35 0.16 16 42 H 0.09 0.98 6.30 -51.93 -0.33 0.65 16 43 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 44 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 45 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 46 H 0.13 1.05 7.05 -52.49 -0.37 0.68 16 47 H 0.09 1.97 7.05 -51.93 -0.37 1.60 16 48 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 LS Contribution 366.59 15.07 5.52 5.52 Total: -1.00 -33.36 366.59 -10.35 -43.71 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.09 Total: 5.21 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.90 Total: -0.83 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.94 Total: -50.10 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.08 Total: -18.17 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.36 -10.35 -43.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096071497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.202 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds