Wall clock time and date at job start Tue Mar 31 2020 05:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46497 * 119.99958 * 2 1 4 4 C 1.34770 * 119.99719 * 179.97438 * 2 1 3 5 5 O 1.21590 * 120.00363 * 354.71216 * 4 2 1 6 6 N 1.34776 * 119.99868 * 174.71161 * 4 2 1 7 7 C 1.46636 * 124.99786 * 5.01910 * 6 4 2 8 8 C 1.53409 * 105.05348 * 179.89281 * 7 6 4 9 9 C 1.52616 * 110.24238 * 119.00599 * 8 7 6 10 10 C 1.53260 * 109.37386 * 61.82519 * 9 8 7 11 11 N 1.46925 * 108.75149 * 53.92743 * 10 9 8 12 12 C 1.36941 * 120.58670 * 125.99553 * 11 10 9 13 13 H 1.08002 * 120.00133 * 329.62472 * 12 11 10 14 14 C 1.38814 * 119.99742 * 149.62497 * 12 11 10 15 15 N 1.31617 * 120.00198 * 349.89543 * 14 12 11 16 16 Si 1.86803 * 119.99843 * 169.89828 * 14 12 11 17 17 H 1.48500 * 109.47005 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47022 * 299.99988 * 16 14 12 19 19 H 1.48502 * 109.46856 * 59.99728 * 16 14 12 20 20 C 1.46920 * 118.82632 * 306.26891 * 11 10 9 21 21 C 1.52639 * 110.18873 * 241.35125 * 8 7 6 22 22 C 1.50884 * 104.93215 * 0.11609 * 8 7 6 23 23 C 1.38195 * 131.20025 * 179.90854 * 22 8 7 24 24 C 1.38221 * 120.19071 * 179.97438 * 23 22 8 25 25 C 1.38301 * 119.83177 * 359.97438 * 24 23 22 26 26 C 1.37838 * 120.20314 * 0.02562 * 25 24 23 27 27 C 1.38656 * 108.39806 * 359.88813 * 22 8 7 28 28 H 1.09000 * 109.47199 * 270.00338 * 1 2 3 29 29 H 1.09000 * 109.46698 * 29.99854 * 1 2 3 30 30 H 1.08996 * 109.47178 * 150.00218 * 1 2 3 31 31 H 1.09003 * 109.47173 * 244.83020 * 3 2 1 32 32 H 1.08998 * 109.47368 * 4.83211 * 3 2 1 33 33 H 1.09001 * 109.47194 * 124.83627 * 3 2 1 34 34 H 1.08994 * 110.32843 * 60.99898 * 7 6 4 35 35 H 1.08998 * 110.40887 * 298.82849 * 7 6 4 36 36 H 1.08997 * 109.48656 * 301.85523 * 9 8 7 37 37 H 1.08995 * 109.48566 * 181.79682 * 9 8 7 38 38 H 1.09002 * 109.58835 * 294.15119 * 10 9 8 39 39 H 1.08994 * 109.71052 * 173.78328 * 10 9 8 40 40 H 0.97002 * 120.00123 * 180.02562 * 15 14 12 41 41 H 1.08994 * 109.59747 * 173.53713 * 20 11 10 42 42 H 1.09005 * 109.59475 * 293.99223 * 20 11 10 43 43 H 1.09001 * 109.48875 * 58.14574 * 21 8 7 44 44 H 1.08998 * 109.48843 * 178.20964 * 21 8 7 45 45 H 1.07997 * 119.91091 * 359.94255 * 23 22 8 46 46 H 1.07992 * 120.08451 * 179.97438 * 24 23 22 47 47 H 1.07999 * 119.89820 * 180.02562 * 25 24 23 48 48 H 1.08001 * 119.84480 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5348 -2.2179 0.0980 6 7 3.4823 -1.1697 -0.1071 7 6 4.3269 0.0288 -0.1252 8 6 5.7619 -0.4969 -0.2589 9 6 6.3974 0.0239 -1.5450 10 6 6.4660 1.5542 -1.4948 11 7 7.1547 1.9558 -0.2607 12 6 8.2396 2.7902 -0.3081 13 1 8.8922 2.7791 -1.1686 14 6 8.5005 3.6502 0.7499 15 7 7.6073 3.8107 1.7031 16 14 10.1193 4.5797 0.8205 17 1 10.1513 5.4259 2.0405 18 1 11.2446 3.6116 0.8593 19 1 10.2484 5.4410 -0.3823 20 6 6.6627 1.4416 1.0247 21 6 6.5897 -0.0830 0.9549 22 6 5.6226 -1.9983 -0.3112 23 6 6.5706 -2.9969 -0.4285 24 6 6.1834 -4.3236 -0.4532 25 6 4.8429 -4.6509 -0.3596 26 6 3.8934 -3.6586 -0.2424 27 6 4.2763 -2.3165 -0.2173 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 2.7577 1.3648 -0.9301 32 1 1.4924 2.0954 0.0866 33 1 2.8876 1.2899 0.8435 34 1 4.2130 0.5864 0.8044 35 1 4.0737 0.6593 -0.9776 36 1 5.7951 -0.2852 -2.3993 37 1 7.4040 -0.3822 -1.6435 38 1 5.4566 1.9656 -1.5004 39 1 7.0170 1.9260 -2.3585 40 1 7.7894 4.4120 2.4422 41 1 7.3446 1.7373 1.8219 42 1 5.6690 1.8433 1.2229 43 1 6.1232 -0.4679 1.8616 44 1 7.5972 -0.4888 0.8634 45 1 7.6171 -2.7401 -0.5017 46 1 6.9257 -5.1025 -0.5454 47 1 4.5392 -5.6871 -0.3784 48 1 2.8483 -3.9208 -0.1692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096241341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:55 Heat of formation + Delta-G solvation = 62.400972 kcal Electronic energy + Delta-G solvation = -29913.300793 eV Core-core repulsion = 26163.153593 eV Total energy + Delta-G solvation = -3750.147200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.60123 -39.32123 -37.63325 -35.78851 -35.56131 -33.41860 -31.33063 -30.17078 -30.03729 -29.48607 -28.06466 -27.17425 -25.69950 -24.27781 -22.95159 -22.26919 -22.11900 -20.71375 -19.80968 -18.53820 -17.38579 -16.83497 -16.68058 -16.43795 -15.56855 -15.31390 -14.86873 -14.68775 -14.62968 -13.89821 -13.82574 -13.77363 -13.52665 -13.33707 -13.27201 -13.09600 -12.88282 -12.43235 -12.31365 -12.28177 -11.83896 -11.77611 -11.66957 -11.52677 -11.19414 -10.88470 -10.78320 -10.64622 -10.35651 -10.25912 -10.06893 -10.02897 -9.91870 -9.71467 -9.47752 -8.81723 -8.59841 -8.47808 -7.51168 -6.69194 -5.83784 -3.31454 1.50650 1.60510 2.41195 3.06413 3.34702 3.40539 3.41365 3.57203 4.01549 4.43984 4.59867 4.73444 4.93182 5.01873 5.11467 5.16854 5.23281 5.31999 5.34934 5.38994 5.43781 5.46192 5.52514 5.61741 5.63538 5.70957 5.74455 5.86911 5.90434 6.00554 6.12482 6.17090 6.22710 6.39074 6.42900 6.47292 6.56568 6.60240 6.66277 6.70415 6.73682 6.77422 6.87382 6.92722 7.25440 7.30311 7.61779 7.72765 7.73924 8.39719 8.41812 9.16680 9.77914 10.34615 11.23899 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.004292 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.526984 B = 6521.602189 C = 8071.291943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.632 5.632 3 C 0.058 3.942 4 C 0.718 3.282 5 O -0.577 6.577 6 N -0.564 5.564 7 C 0.096 3.904 8 C -0.014 4.014 9 C -0.116 4.116 10 C 0.144 3.856 11 N -0.589 5.589 12 C -0.252 4.252 13 H 0.064 0.936 14 C 0.005 3.995 15 N -0.906 5.906 16 Si 0.904 3.096 17 H -0.290 1.290 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.170 3.830 21 C -0.125 4.125 22 C -0.115 4.115 23 C -0.074 4.074 24 C -0.148 4.148 25 C -0.101 4.101 26 C -0.138 4.138 27 C 0.165 3.835 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.016 0.984 39 H 0.057 0.943 40 H 0.255 0.745 41 H 0.095 0.905 42 H 0.017 0.983 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.187 -9.472 -3.938 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.369 5.369 3 C -0.084 4.084 4 C 0.422 3.578 5 O -0.454 6.454 6 N -0.289 5.289 7 C -0.025 4.025 8 C -0.015 4.015 9 C -0.156 4.156 10 C 0.018 3.982 11 N -0.312 5.312 12 C -0.382 4.382 13 H 0.082 0.918 14 C -0.193 4.193 15 N -0.551 5.551 16 Si 0.734 3.266 17 H -0.216 1.216 18 H -0.210 1.210 19 H -0.209 1.209 20 C 0.044 3.956 21 C -0.164 4.164 22 C -0.119 4.119 23 C -0.093 4.093 24 C -0.167 4.167 25 C -0.120 4.120 26 C -0.159 4.159 27 C 0.069 3.931 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.034 0.966 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.113 0.887 42 H 0.035 0.965 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.695 -9.771 -3.716 14.258 hybrid contribution 0.766 0.674 0.158 1.033 sum -8.929 -9.097 -3.558 13.234 Atomic orbital electron populations 1.21549 0.77397 1.02940 1.01784 1.46825 1.07043 1.04898 1.78176 1.22650 0.97843 0.84907 1.03044 1.15545 0.80226 0.84117 0.77876 1.90864 1.67145 1.30308 1.57115 1.45013 1.04202 1.07243 1.72404 1.23213 0.89124 0.86638 1.03496 1.19795 0.93912 0.89113 0.98660 1.22016 1.00283 0.99184 0.94100 1.20966 0.95488 0.90740 0.91027 1.43966 1.33199 1.53839 1.00199 1.19142 1.01280 1.13085 1.04674 0.91826 1.25110 0.97996 0.97344 0.98849 1.69930 1.33347 1.38973 1.12823 0.86347 0.83564 0.79623 0.77057 1.21623 1.20990 1.20895 1.20795 0.98278 0.86365 0.90171 1.22162 0.98741 1.01386 0.94153 1.20136 0.91878 0.95722 1.04131 1.20354 0.98753 0.91403 0.98791 1.20950 0.95940 0.95811 1.04043 1.20825 0.92757 0.98538 0.99854 1.20861 1.01046 0.89717 1.04272 1.18181 0.89457 0.87079 0.98393 0.92882 0.91076 0.90666 0.91132 0.90330 0.90463 0.88897 0.89051 0.92999 0.91457 0.96577 0.92447 0.93531 0.88702 0.96548 0.93148 0.91846 0.85906 0.86089 0.86035 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.08 10.35 59.85 0.62 1.70 16 2 N -0.63 -8.28 3.27 -195.34 -0.64 -8.92 16 3 C 0.06 0.65 8.85 59.85 0.53 1.18 16 4 C 0.72 11.76 8.29 -86.92 -0.72 11.04 16 5 O -0.58 -10.71 14.17 5.29 0.07 -10.63 16 6 N -0.56 -9.15 3.13 -118.34 -0.37 -9.52 16 7 C 0.10 1.47 3.62 -3.76 -0.01 1.46 16 8 C -0.01 -0.23 0.69 -155.74 -0.11 -0.34 16 9 C -0.12 -1.92 4.79 -26.79 -0.13 -2.04 16 10 C 0.14 2.73 6.20 -3.68 -0.02 2.71 16 11 N -0.59 -13.50 2.99 -172.53 -0.52 -14.01 16 12 C -0.25 -6.49 9.59 -15.06 -0.14 -6.64 16 13 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 14 C 0.01 0.14 5.07 -17.43 -0.09 0.06 16 15 N -0.91 -24.77 10.95 55.49 0.61 -24.16 16 16 Si 0.90 20.83 29.57 -169.99 -5.03 15.80 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.17 3.70 4.93 -3.92 -0.02 3.68 16 21 C -0.13 -2.28 4.77 -27.02 -0.13 -2.41 16 22 C -0.12 -1.84 4.85 -104.39 -0.51 -2.34 16 23 C -0.07 -1.06 10.03 -39.60 -0.40 -1.46 16 24 C -0.15 -1.88 10.06 -39.56 -0.40 -2.28 16 25 C -0.10 -1.33 10.02 -39.70 -0.40 -1.73 16 26 C -0.14 -2.16 9.46 -39.22 -0.37 -2.53 16 27 C 0.16 2.74 6.62 -83.51 -0.55 2.19 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.53 7.96 -51.93 -0.41 0.11 16 30 H 0.07 0.83 7.50 -51.93 -0.39 0.44 16 31 H 0.07 0.80 5.68 -51.93 -0.29 0.51 16 32 H 0.08 0.70 7.84 -51.93 -0.41 0.29 16 33 H 0.08 0.96 5.45 -51.93 -0.28 0.67 16 34 H 0.09 1.46 4.23 -51.93 -0.22 1.24 16 35 H 0.09 1.33 3.99 -51.93 -0.21 1.12 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.02 0.30 6.79 -51.93 -0.35 -0.05 16 39 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 40 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.09 2.39 5.99 -51.93 -0.31 2.08 16 42 H 0.02 0.37 6.78 -51.93 -0.35 0.01 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 46 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 47 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 48 H 0.14 2.22 6.29 -52.49 -0.33 1.89 16 LS Contribution 361.07 15.07 5.44 5.44 Total: -1.00 -30.21 361.07 -10.18 -40.39 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.90 Total: 3.37 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -2.85 Total: 2.24 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.92 Total: -56.61 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.07 Total: -10.63 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.21 -10.18 -40.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096241341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.789 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds