Wall clock time and date at job start Tue Mar 31 2020 05:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 N 1.46506 * 109.46796 * 180.02562 * 3 2 1 5 5 C 1.36528 * 124.77640 * 90.02195 * 4 3 2 6 6 C 1.50702 * 125.38369 * 359.95393 * 5 4 3 7 7 C 1.34330 * 109.23160 * 179.97438 * 5 4 3 8 8 C 1.46963 * 106.37975 * 359.97438 * 7 5 4 9 9 C 1.41843 * 127.07703 * 179.97438 * 8 7 5 10 10 C 1.38080 * 120.00373 * 345.29561 * 9 8 7 11 11 C 1.43194 * 119.99531 * 353.27600 * 10 9 8 12 12 N 6.81176 * 167.77609 * 283.03035 * 2 1 3 13 13 C 1.46944 * 120.00080 * 173.27900 * 10 9 8 14 14 O 1.21673 * 120.00242 * 359.97438 * 13 10 9 15 15 N 1.34783 * 120.00144 * 180.02562 * 13 10 9 16 16 C 1.46492 * 120.00156 * 179.97438 * 15 13 10 17 17 H 1.09003 * 109.47264 * 325.00038 * 16 15 13 18 18 C 1.52999 * 109.46986 * 84.99729 * 16 15 13 19 19 C 1.50692 * 109.47347 * 204.99898 * 16 15 13 20 20 H 1.07999 * 119.99985 * 332.86802 * 19 16 15 21 21 C 1.37878 * 120.00539 * 152.87199 * 19 16 15 22 22 N 1.31510 * 120.00220 * 174.07663 * 21 19 16 23 23 Si 1.86798 * 119.99573 * 354.07337 * 21 19 16 24 24 H 1.48502 * 109.47521 * 275.32929 * 23 21 19 25 25 H 1.48504 * 109.47212 * 35.33195 * 23 21 19 26 26 H 1.48507 * 109.47181 * 155.32970 * 23 21 19 27 27 C 1.34573 * 124.76618 * 270.28359 * 4 3 2 28 28 C 1.50697 * 125.95890 * 0.02562 * 27 4 3 29 29 H 1.09000 * 109.46707 * 60.00509 * 1 2 3 30 30 H 1.09002 * 109.46774 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47327 * 300.00703 * 1 2 3 32 32 H 1.08992 * 109.47309 * 239.99565 * 2 1 3 33 33 H 1.09007 * 109.47018 * 119.99333 * 2 1 3 34 34 H 1.08992 * 109.47494 * 59.99679 * 3 2 1 35 35 H 1.09000 * 109.47025 * 299.99296 * 3 2 1 36 36 H 1.08998 * 109.47073 * 270.00739 * 6 5 4 37 37 H 1.09005 * 109.46809 * 30.00339 * 6 5 4 38 38 H 1.09000 * 109.47073 * 149.99774 * 6 5 4 39 39 H 1.08004 * 126.80610 * 180.02562 * 7 5 4 40 40 H 1.08002 * 119.99598 * 165.29370 * 9 8 7 41 41 H 0.96995 * 119.99419 * 359.97438 * 15 13 10 42 42 H 1.08993 * 109.47744 * 294.85262 * 18 16 15 43 43 H 1.09004 * 109.47425 * 54.85493 * 18 16 15 44 44 H 1.09002 * 109.47479 * 174.85141 * 18 16 15 45 45 H 0.97001 * 119.99842 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.47392 * 270.20428 * 28 27 4 47 47 H 1.08999 * 109.47026 * 30.20345 * 28 27 4 48 48 H 1.08999 * 109.47336 * 150.20176 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2833 1.4431 -1.1224 6 6 3.7712 1.4428 -2.5397 7 6 5.5776 1.4434 -0.7629 8 6 5.5996 1.4436 0.7066 9 6 6.7440 1.4435 1.5446 10 6 7.9843 1.1397 1.0196 11 6 8.0971 0.6853 -0.3337 12 7 8.1873 0.3252 -1.4051 13 6 9.1886 1.2825 1.8494 14 8 9.0928 1.6690 2.9992 15 7 10.3994 0.9864 1.3367 16 6 11.6000 1.1293 2.1639 17 1 11.4820 1.9832 2.8310 18 6 11.8027 -0.1409 2.9923 19 6 12.7984 1.3469 1.2766 20 1 12.8012 0.9598 0.2684 21 6 13.8914 2.0402 1.7518 22 7 14.9813 2.1302 1.0214 23 14 13.8238 2.8515 3.4330 24 1 13.1968 4.1921 3.3109 25 1 13.0197 2.0111 4.3563 26 1 15.2014 2.9964 3.9684 27 6 4.2729 1.4368 1.1045 28 6 3.7760 1.4290 2.5272 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.6483 0.4151 -2.8815 37 1 2.8104 1.9561 -2.5789 38 1 4.4844 1.9572 -3.1838 39 1 6.4325 1.4443 -1.4230 40 1 6.6451 1.6812 2.5935 41 1 10.4757 0.6786 0.4201 42 1 10.9798 -0.2492 3.6988 43 1 11.8292 -1.0063 2.3301 44 1 12.7436 -0.0724 3.5383 45 1 15.7501 2.6183 1.3556 46 1 3.6524 2.4548 2.8746 47 1 2.8179 0.9115 2.5746 48 1 4.4983 0.9152 3.1616 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096402149.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:07 Heat of formation + Delta-G solvation = 39.518421 kcal Electronic energy + Delta-G solvation = -27314.593176 eV Core-core repulsion = 23563.453714 eV Total energy + Delta-G solvation = -3751.139462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.74961 -39.11859 -36.80824 -35.64456 -34.92882 -33.83226 -32.73864 -32.28822 -30.91948 -29.63920 -29.42054 -26.59562 -25.43083 -25.16779 -23.27130 -22.29548 -21.51796 -20.40995 -19.82745 -19.11290 -17.74949 -16.84971 -16.25617 -15.90093 -15.73148 -15.34910 -14.83829 -14.54543 -14.37810 -14.22050 -14.02182 -13.76343 -13.60242 -13.34241 -13.22519 -13.01027 -12.92594 -12.75735 -12.66829 -12.57963 -12.48609 -12.43406 -12.26622 -12.07096 -11.79862 -11.65917 -11.45698 -11.42074 -11.32629 -11.07453 -10.77300 -10.43518 -10.10874 -9.81849 -9.24556 -9.14473 -8.61583 -8.50472 -8.09990 -7.64018 -6.14749 -4.17432 0.56681 2.02344 2.45224 2.84374 2.98667 3.23433 3.33199 3.40149 3.47232 4.01951 4.09023 4.15126 4.18838 4.29682 4.32285 4.40095 4.50622 4.56895 4.66373 4.76341 4.82785 4.95423 5.04640 5.13227 5.18215 5.24680 5.25626 5.29342 5.37125 5.41994 5.47641 5.50513 5.60575 5.65115 5.79192 5.89319 6.21831 6.30331 6.43341 6.62044 6.67847 6.75958 6.88366 6.99170 7.00706 7.27475 7.43604 7.60298 7.79784 8.20433 8.62626 8.84976 8.99450 9.46647 10.97275 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.023841 B = 0.002431 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.170120 B =11515.930069 C =12144.247420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.095 3.905 4 N -0.430 5.430 5 C 0.007 3.993 6 C -0.083 4.083 7 C -0.164 4.164 8 C -0.197 4.197 9 C 0.099 3.901 10 C -0.153 4.153 11 C 0.272 3.728 12 N -0.436 5.436 13 C 0.562 3.438 14 O -0.556 6.556 15 N -0.697 5.697 16 C 0.234 3.766 17 H 0.051 0.949 18 C -0.150 4.150 19 C -0.531 4.531 20 H 0.078 0.922 21 C 0.080 3.920 22 N -0.890 5.890 23 Si 0.873 3.127 24 H -0.273 1.273 25 H -0.257 1.257 26 H -0.287 1.287 27 C 0.088 3.912 28 C -0.096 4.096 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.393 0.607 42 H 0.031 0.969 43 H 0.045 0.955 44 H 0.055 0.945 45 H 0.267 0.733 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.234 -1.885 -0.877 32.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C -0.026 4.026 4 N -0.105 5.105 5 C -0.100 4.100 6 C -0.141 4.141 7 C -0.187 4.187 8 C -0.204 4.204 9 C 0.075 3.925 10 C -0.161 4.161 11 C -0.041 4.041 12 N -0.114 5.114 13 C 0.348 3.652 14 O -0.438 6.438 15 N -0.344 5.344 16 C 0.131 3.869 17 H 0.069 0.931 18 C -0.208 4.208 19 C -0.569 4.569 20 H 0.096 0.904 21 C -0.124 4.124 22 N -0.527 5.527 23 Si 0.699 3.301 24 H -0.198 1.198 25 H -0.182 1.182 26 H -0.213 1.213 27 C -0.030 4.030 28 C -0.153 4.153 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.170 0.830 40 H 0.170 0.830 41 H 0.226 0.774 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -32.231 -2.093 -1.779 32.348 hybrid contribution 0.198 0.462 0.628 0.804 sum -32.034 -1.631 -1.151 32.096 Atomic orbital electron populations 1.21704 0.94265 1.02616 1.02202 1.21920 0.96763 0.95613 1.03646 1.22024 0.77253 0.98692 1.04632 1.43605 1.06102 1.55625 1.05204 1.20185 0.90342 1.10924 0.88523 1.20333 1.01250 1.02634 0.89858 1.22489 0.95828 1.06430 0.93915 1.18586 0.91247 1.17369 0.93149 1.21227 0.88345 0.84269 0.98689 1.18354 0.95504 1.14375 0.87862 1.25432 0.92741 0.93237 0.92661 1.81075 1.08107 1.10455 1.11720 1.17579 0.82921 0.78371 0.86360 1.90752 1.86505 1.48984 1.17532 1.46420 1.06474 1.64986 1.16481 1.19114 0.82348 0.94609 0.90786 0.93126 1.22277 0.99892 0.99569 0.99112 1.21016 0.98182 1.36743 1.00998 0.90424 1.24896 0.94952 0.95149 0.97424 1.69894 1.03557 1.41279 1.37973 0.86927 0.77352 0.80915 0.84859 1.19818 1.18160 1.21282 1.20930 0.89851 1.03114 0.89069 1.20524 1.02082 1.03546 0.89179 0.92331 0.91867 0.92276 0.91038 0.91013 0.88965 0.88977 0.91097 0.91931 0.90029 0.83047 0.83044 0.77362 0.94984 0.93597 0.92601 0.92331 0.89951 0.91243 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.45 9.91 37.16 0.37 -0.08 16 2 C -0.14 -0.64 6.26 -26.73 -0.17 -0.81 16 3 C 0.10 0.47 5.36 -4.04 -0.02 0.45 16 4 N -0.43 -3.68 2.68 -107.51 -0.29 -3.97 16 5 C 0.01 0.07 6.84 -81.88 -0.56 -0.49 16 6 C -0.08 -0.63 10.04 36.01 0.36 -0.27 16 7 C -0.16 -2.15 9.39 -37.43 -0.35 -2.50 16 8 C -0.20 -2.44 5.94 -104.88 -0.62 -3.06 16 9 C 0.10 1.34 9.20 -38.26 -0.35 0.98 16 10 C -0.15 -2.52 5.90 -104.51 -0.62 -3.13 16 11 C 0.27 4.61 10.95 -22.54 -0.25 4.36 16 12 N -0.44 -7.74 17.12 41.76 0.71 -7.03 16 13 C 0.56 11.30 7.71 -12.73 -0.10 11.20 16 14 O -0.56 -12.33 15.97 5.21 0.08 -12.25 16 15 N -0.70 -15.23 5.02 -56.16 -0.28 -15.51 16 16 C 0.23 5.79 2.12 -69.09 -0.15 5.64 16 17 H 0.05 1.33 5.18 -51.93 -0.27 1.06 16 18 C -0.15 -3.39 9.18 37.16 0.34 -3.05 16 19 C -0.53 -14.88 9.05 -34.44 -0.31 -15.19 16 20 H 0.08 2.32 8.03 -52.49 -0.42 1.90 16 21 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 22 N -0.89 -26.92 13.96 55.43 0.77 -26.14 16 23 Si 0.87 21.78 26.33 -169.99 -4.48 17.30 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.26 -6.22 6.36 56.52 0.36 -5.86 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C 0.09 0.83 6.95 -81.29 -0.56 0.27 16 28 C -0.10 -0.58 9.61 36.00 0.35 -0.23 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.37 8.11 -51.92 -0.42 -0.05 16 34 H 0.09 0.33 7.51 -51.93 -0.39 -0.06 16 35 H 0.09 0.36 6.87 -51.93 -0.36 0.01 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.34 6.92 -51.93 -0.36 -0.01 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.15 2.24 4.96 -52.48 -0.26 1.98 16 40 H 0.15 1.79 7.42 -52.49 -0.39 1.40 16 41 H 0.39 8.23 7.45 -40.82 -0.30 7.93 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.27 7.12 -51.93 -0.37 0.90 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.30 7.57 -51.93 -0.39 -0.09 16 48 H 0.09 0.54 7.80 -51.93 -0.40 0.13 16 LS Contribution 398.04 15.07 6.00 6.00 Total: -1.00 -34.06 398.04 -7.54 -41.60 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.32 Total: 3.72 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.74 Total: -3.71 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.92 Total: -52.66 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.08 Total: -12.25 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.48 Total: 17.30 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.06 -7.54 -41.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096402149.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.119 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds