Wall clock time and date at job start Tue Mar 31 2020 05:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 N 1.46506 * 109.46796 * 180.02562 * 3 2 1 5 5 C 1.36528 * 124.77640 * 90.02195 * 4 3 2 6 6 C 1.50702 * 125.38369 * 359.95393 * 5 4 3 7 7 C 1.34330 * 109.23160 * 179.97438 * 5 4 3 8 8 C 1.46963 * 106.37975 * 359.97438 * 7 5 4 9 9 C 1.41843 * 127.07703 * 179.97438 * 8 7 5 10 10 C 1.38080 * 120.00373 * 345.29561 * 9 8 7 11 11 C 1.43194 * 119.99531 * 353.27600 * 10 9 8 12 12 N 6.81176 * 167.77609 * 283.03035 * 2 1 3 13 13 C 1.46944 * 120.00080 * 173.27900 * 10 9 8 14 14 O 1.21673 * 120.00242 * 359.97438 * 13 10 9 15 15 N 1.34783 * 120.00144 * 180.02562 * 13 10 9 16 16 C 1.46492 * 120.00156 * 179.97438 * 15 13 10 17 17 H 1.09003 * 109.47264 * 325.00038 * 16 15 13 18 18 C 1.52999 * 109.46986 * 84.99729 * 16 15 13 19 19 C 1.50692 * 109.47347 * 204.99898 * 16 15 13 20 20 H 1.07999 * 119.99985 * 332.86802 * 19 16 15 21 21 C 1.37878 * 120.00539 * 152.87199 * 19 16 15 22 22 N 1.31510 * 120.00220 * 174.07663 * 21 19 16 23 23 Si 1.86798 * 119.99573 * 354.07337 * 21 19 16 24 24 H 1.48502 * 109.47521 * 275.32929 * 23 21 19 25 25 H 1.48504 * 109.47212 * 35.33195 * 23 21 19 26 26 H 1.48507 * 109.47181 * 155.32970 * 23 21 19 27 27 C 1.34573 * 124.76618 * 270.28359 * 4 3 2 28 28 C 1.50697 * 125.95890 * 0.02562 * 27 4 3 29 29 H 1.09000 * 109.46707 * 60.00509 * 1 2 3 30 30 H 1.09002 * 109.46774 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47327 * 300.00703 * 1 2 3 32 32 H 1.08992 * 109.47309 * 239.99565 * 2 1 3 33 33 H 1.09007 * 109.47018 * 119.99333 * 2 1 3 34 34 H 1.08992 * 109.47494 * 59.99679 * 3 2 1 35 35 H 1.09000 * 109.47025 * 299.99296 * 3 2 1 36 36 H 1.08998 * 109.47073 * 270.00739 * 6 5 4 37 37 H 1.09005 * 109.46809 * 30.00339 * 6 5 4 38 38 H 1.09000 * 109.47073 * 149.99774 * 6 5 4 39 39 H 1.08004 * 126.80610 * 180.02562 * 7 5 4 40 40 H 1.08002 * 119.99598 * 165.29370 * 9 8 7 41 41 H 0.96995 * 119.99419 * 359.97438 * 15 13 10 42 42 H 1.08993 * 109.47744 * 294.85262 * 18 16 15 43 43 H 1.09004 * 109.47425 * 54.85493 * 18 16 15 44 44 H 1.09002 * 109.47479 * 174.85141 * 18 16 15 45 45 H 0.97001 * 119.99842 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.47392 * 270.20428 * 28 27 4 47 47 H 1.08999 * 109.47026 * 30.20345 * 28 27 4 48 48 H 1.08999 * 109.47336 * 150.20176 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2833 1.4431 -1.1224 6 6 3.7712 1.4428 -2.5397 7 6 5.5776 1.4434 -0.7629 8 6 5.5996 1.4436 0.7066 9 6 6.7440 1.4435 1.5446 10 6 7.9843 1.1397 1.0196 11 6 8.0971 0.6853 -0.3337 12 7 8.1873 0.3252 -1.4051 13 6 9.1886 1.2825 1.8494 14 8 9.0928 1.6690 2.9992 15 7 10.3994 0.9864 1.3367 16 6 11.6000 1.1293 2.1639 17 1 11.4820 1.9832 2.8310 18 6 11.8027 -0.1409 2.9923 19 6 12.7984 1.3469 1.2766 20 1 12.8012 0.9598 0.2684 21 6 13.8914 2.0402 1.7518 22 7 14.9813 2.1302 1.0214 23 14 13.8238 2.8515 3.4330 24 1 13.1968 4.1921 3.3109 25 1 13.0197 2.0111 4.3563 26 1 15.2014 2.9964 3.9684 27 6 4.2729 1.4368 1.1045 28 6 3.7760 1.4290 2.5272 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.6483 0.4151 -2.8815 37 1 2.8104 1.9561 -2.5789 38 1 4.4844 1.9572 -3.1838 39 1 6.4325 1.4443 -1.4230 40 1 6.6451 1.6812 2.5935 41 1 10.4757 0.6786 0.4201 42 1 10.9798 -0.2492 3.6988 43 1 11.8292 -1.0063 2.3301 44 1 12.7436 -0.0724 3.5383 45 1 15.7501 2.6183 1.3556 46 1 3.6524 2.4548 2.8746 47 1 2.8179 0.9115 2.5746 48 1 4.4983 0.9152 3.1616 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096402149.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:06 Heat of formation + Delta-G solvation = 18.820093 kcal Electronic energy + Delta-G solvation = -27315.490723 eV Core-core repulsion = 23563.453714 eV Total energy + Delta-G solvation = -3752.037009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.54739 -40.67778 -38.04689 -36.80928 -36.21365 -34.76244 -34.35751 -33.51088 -32.06903 -31.02126 -30.06776 -27.41622 -27.24353 -26.19423 -24.18879 -23.03240 -22.73423 -21.71108 -21.15643 -20.39161 -19.14552 -18.11943 -17.62574 -17.09989 -16.40275 -16.36279 -16.16140 -15.92800 -15.83968 -15.17497 -15.11741 -14.81750 -14.55277 -14.30988 -14.24077 -14.15115 -14.12627 -14.06795 -13.88088 -13.46908 -13.28005 -13.25816 -13.08632 -13.02172 -12.90922 -12.79605 -12.73870 -12.60546 -12.36900 -12.31979 -12.12455 -11.81618 -11.72515 -11.24519 -11.11356 -10.87566 -10.78482 -9.86281 -9.37056 -8.62686 -8.36413 -6.43645 -0.51632 1.21143 1.35213 1.37781 1.50051 1.68898 1.77697 1.77901 1.85669 2.31313 2.50084 2.82096 3.03096 3.10417 3.62903 3.67917 3.75808 3.88948 3.95055 4.04881 4.26746 4.30233 4.36788 4.42765 4.49500 4.53473 4.64534 4.67082 4.75645 4.77929 4.78791 4.79929 4.84896 4.91919 4.98536 5.09595 5.11099 5.13918 5.16621 5.23507 5.33742 5.38279 5.38735 5.49182 5.70969 5.75687 6.05212 6.12792 6.27443 6.54028 6.58531 6.85236 7.20331 7.39230 8.79222 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.023841 B = 0.002431 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.170120 B =11515.930069 C =12144.247420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.088 3.912 4 N -0.424 5.424 5 C 0.010 3.990 6 C -0.083 4.083 7 C -0.198 4.198 8 C -0.244 4.244 9 C 0.153 3.847 10 C -0.205 4.205 11 C 0.287 3.713 12 N -0.471 5.471 13 C 0.570 3.430 14 O -0.581 6.581 15 N -0.708 5.708 16 C 0.238 3.762 17 H 0.039 0.961 18 C -0.143 4.143 19 C -0.534 4.534 20 H 0.043 0.957 21 C 0.027 3.973 22 N -0.934 5.934 23 Si 0.934 3.066 24 H -0.271 1.271 25 H -0.243 1.243 26 H -0.277 1.277 27 C 0.126 3.874 28 C -0.102 4.102 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.172 0.828 41 H 0.394 0.606 42 H 0.046 0.954 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.271 0.729 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.823 -1.345 1.175 36.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C -0.031 4.031 4 N -0.097 5.097 5 C -0.097 4.097 6 C -0.140 4.140 7 C -0.221 4.221 8 C -0.251 4.251 9 C 0.129 3.871 10 C -0.213 4.213 11 C -0.024 4.024 12 N -0.149 5.149 13 C 0.359 3.641 14 O -0.464 6.464 15 N -0.355 5.355 16 C 0.134 3.866 17 H 0.057 0.943 18 C -0.202 4.202 19 C -0.572 4.572 20 H 0.061 0.939 21 C -0.173 4.173 22 N -0.573 5.573 23 Si 0.757 3.243 24 H -0.197 1.197 25 H -0.167 1.167 26 H -0.202 1.202 27 C 0.005 3.995 28 C -0.158 4.158 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.145 0.855 40 H 0.189 0.811 41 H 0.227 0.773 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.122 0.878 47 H 0.114 0.886 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -36.866 -1.569 0.244 36.900 hybrid contribution 1.231 0.303 -0.098 1.271 sum -35.635 -1.266 0.146 35.658 Atomic orbital electron populations 1.21679 0.92860 1.02790 1.03091 1.21867 0.97854 0.94996 1.02778 1.22416 0.74518 0.99461 1.06749 1.43965 1.07731 1.53667 1.04367 1.20499 0.89868 1.09168 0.90198 1.20409 1.02293 1.03313 0.88015 1.22470 0.96548 1.08588 0.94471 1.18682 0.92372 1.21099 0.92899 1.21504 0.87463 0.78776 0.99374 1.17825 0.95046 1.20808 0.87659 1.25492 0.92023 0.92310 0.92599 1.81051 1.08858 1.12477 1.12546 1.17865 0.83042 0.76943 0.86296 1.90711 1.86896 1.50234 1.18548 1.46268 1.06590 1.66292 1.16371 1.18892 0.82165 0.95164 0.90354 0.94284 1.22163 1.00274 0.98606 0.99114 1.21195 0.99735 1.36232 1.00080 0.93900 1.25704 0.94468 0.95769 1.01339 1.70013 1.04465 1.42672 1.40142 0.85959 0.77944 0.79889 0.80512 1.19659 1.16675 1.20213 1.21528 0.88860 0.98178 0.90915 1.20785 1.03415 1.05312 0.86327 0.91707 0.92124 0.91138 0.92420 0.91488 0.86444 0.87428 0.90537 0.89252 0.90643 0.85492 0.81071 0.77310 0.93509 0.93092 0.92845 0.92017 0.87845 0.88648 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.33 9.91 71.98 0.71 0.38 16 2 C -0.14 -0.75 6.26 30.59 0.19 -0.56 16 3 C 0.09 0.47 5.36 86.38 0.46 0.94 16 4 N -0.42 -5.83 2.68 -494.05 -1.33 -7.15 16 5 C 0.01 0.19 6.84 40.94 0.28 0.47 16 6 C -0.08 -1.11 10.04 71.24 0.72 -0.39 16 7 C -0.20 -5.19 9.39 23.66 0.22 -4.96 16 8 C -0.24 -5.71 5.94 -20.03 -0.12 -5.83 16 9 C 0.15 3.96 9.20 23.12 0.21 4.17 16 10 C -0.21 -6.89 5.90 -19.79 -0.12 -7.01 16 11 C 0.29 10.27 10.95 88.35 0.97 11.24 16 12 N -0.47 -17.85 17.12 18.98 0.32 -17.53 16 13 C 0.57 23.30 7.71 86.52 0.67 23.96 16 14 O -0.58 -25.58 15.97 -4.26 -0.07 -25.64 16 15 N -0.71 -32.03 5.02 -449.83 -2.26 -34.29 16 16 C 0.24 11.97 2.12 44.24 0.09 12.06 16 17 H 0.04 2.06 5.18 -2.39 -0.01 2.05 16 18 C -0.14 -6.45 9.18 71.98 0.66 -5.79 16 19 C -0.53 -31.04 9.05 25.60 0.23 -30.80 16 20 H 0.04 2.72 8.03 -2.91 -0.02 2.70 16 21 C 0.03 1.59 5.47 84.66 0.46 2.05 16 22 N -0.93 -58.20 13.96 21.45 0.30 -57.90 16 23 Si 0.93 45.28 26.33 68.60 1.81 47.08 16 24 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.24 -11.17 6.36 99.48 0.63 -10.54 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 27 C 0.13 1.96 6.95 42.20 0.29 2.25 16 28 C -0.10 -0.72 9.61 71.23 0.68 -0.04 16 29 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.45 8.11 -2.38 -0.02 0.43 16 34 H 0.12 0.14 7.51 -2.39 -0.02 0.12 16 35 H 0.11 0.33 6.87 -2.39 -0.02 0.31 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 0.69 6.92 -2.38 -0.02 0.68 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.13 3.98 4.96 -2.91 -0.01 3.97 16 40 H 0.17 3.63 7.42 -2.91 -0.02 3.61 16 41 H 0.39 17.52 7.45 -92.71 -0.69 16.83 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 44 H 0.05 2.39 7.12 -2.39 -0.02 2.38 16 45 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 46 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.09 0.26 7.57 -2.39 -0.02 0.24 16 48 H 0.10 0.70 7.80 -2.39 -0.02 0.68 16 Total: -1.00 -77.66 398.04 5.62 -72.05 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.22 Total: 21.24 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 6.62 Total: 2.15 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -2.96 Total: -116.87 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.07 Total: -25.64 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.81 Total: 47.08 kcal Total: -77.66 5.62 -72.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096402149.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.866 kcal (2) G-P(sol) polarization free energy of solvation -77.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds