Wall clock time and date at job start Tue Mar 31 2020 05:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47180 * 2 1 4 4 N 1.46497 * 109.47324 * 180.02562 * 3 2 1 5 5 C 1.36536 * 124.76991 * 90.02386 * 4 3 2 6 6 C 1.50705 * 125.38303 * 359.97438 * 5 4 3 7 7 C 1.34320 * 109.23206 * 180.02562 * 5 4 3 8 8 C 1.46970 * 106.38471 * 0.02562 * 7 5 4 9 9 C 1.41836 * 127.08563 * 179.97438 * 8 7 5 10 10 C 1.38080 * 119.99892 * 343.13994 * 9 8 7 11 11 C 1.43197 * 119.99894 * 351.89111 * 10 9 8 12 12 N 6.76216 * 168.39536 * 276.43370 * 2 1 3 13 13 C 1.46952 * 119.99904 * 171.89668 * 10 9 8 14 14 O 1.21671 * 119.99811 * 359.97438 * 13 10 9 15 15 N 1.34772 * 120.00128 * 179.97438 * 13 10 9 16 16 C 1.46495 * 120.00349 * 179.97438 * 15 13 10 17 17 H 1.09001 * 109.47432 * 34.99541 * 16 15 13 18 18 C 1.52998 * 109.46902 * 275.00110 * 16 15 13 19 19 C 1.50699 * 109.47342 * 155.00166 * 16 15 13 20 20 H 1.08002 * 120.00140 * 6.13862 * 19 16 15 21 21 C 1.37882 * 120.00134 * 186.14542 * 19 16 15 22 22 N 1.31509 * 120.00032 * 193.06669 * 21 19 16 23 23 Si 1.86804 * 119.99839 * 13.33384 * 21 19 16 24 24 H 1.48499 * 109.47292 * 269.73137 * 23 21 19 25 25 H 1.48503 * 109.47181 * 29.72939 * 23 21 19 26 26 H 1.48500 * 109.46979 * 149.72745 * 23 21 19 27 27 C 1.34569 * 124.77569 * 270.30594 * 4 3 2 28 28 C 1.50698 * 125.95166 * 0.03212 * 27 4 3 29 29 H 1.09001 * 109.46644 * 299.99133 * 1 2 3 30 30 H 1.09000 * 109.47434 * 59.99339 * 1 2 3 31 31 H 1.08999 * 109.47257 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46431 * 240.00389 * 2 1 3 33 33 H 1.09000 * 109.47434 * 120.00661 * 2 1 3 34 34 H 1.09000 * 109.47174 * 60.00334 * 3 2 1 35 35 H 1.09000 * 109.47477 * 300.00635 * 3 2 1 36 36 H 1.09002 * 109.46614 * 269.99260 * 6 5 4 37 37 H 1.08996 * 109.47140 * 29.99250 * 6 5 4 38 38 H 1.08995 * 109.46963 * 149.99839 * 6 5 4 39 39 H 1.08000 * 126.81427 * 180.02562 * 7 5 4 40 40 H 1.08002 * 120.00304 * 163.13755 * 9 8 7 41 41 H 0.97005 * 119.99734 * 0.02562 * 15 13 10 42 42 H 1.09002 * 109.47154 * 176.61156 * 18 16 15 43 43 H 1.09008 * 109.47131 * 296.60269 * 18 16 15 44 44 H 1.08994 * 109.47739 * 56.60872 * 18 16 15 45 45 H 0.96993 * 120.00007 * 356.28738 * 22 21 19 46 46 H 1.09003 * 109.47161 * 270.15142 * 28 27 4 47 47 H 1.08996 * 109.47473 * 30.15353 * 28 27 4 48 48 H 1.09007 * 109.46835 * 150.15564 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2832 1.4431 -1.1225 6 6 3.7709 1.4434 -2.5398 7 6 5.5774 1.4424 -0.7633 8 6 5.5998 1.4406 0.7063 9 6 6.7441 1.4387 1.5443 10 6 7.9770 1.0917 1.0284 11 6 8.0753 0.5680 -0.3008 12 7 8.1540 0.1524 -1.3517 13 6 9.1882 1.2597 1.8434 14 8 9.1047 1.7051 2.9726 15 7 10.3916 0.9206 1.3401 16 6 11.5991 1.0886 2.1524 17 1 11.3655 0.8842 3.1973 18 6 12.1101 2.5242 2.0155 19 6 12.6609 0.1301 1.6782 20 1 12.4936 -0.4667 0.7937 21 6 13.8459 0.0148 2.3736 22 7 14.8663 -0.6153 1.8340 23 14 13.9995 0.7474 4.0851 24 1 14.4899 2.1453 3.9831 25 1 12.6714 0.7360 4.7495 26 1 14.9592 -0.0569 4.8835 27 6 4.2730 1.4364 1.1044 28 6 3.7762 1.4279 2.5271 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.6480 0.4157 -2.8818 37 1 2.8102 1.9567 -2.5788 38 1 4.4842 1.9577 -3.1838 39 1 6.4323 1.4430 -1.4233 40 1 6.6512 1.7088 2.5858 41 1 10.4582 0.5659 0.4397 42 1 12.9730 2.6663 2.6661 43 1 12.4005 2.7094 0.9813 44 1 11.3211 3.2196 2.3014 45 1 14.7689 -1.0455 0.9702 46 1 3.6534 2.4536 2.8752 47 1 2.8178 0.9110 2.5742 48 1 4.4983 0.9131 3.1610 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096402150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:11 Heat of formation + Delta-G solvation = 36.736200 kcal Electronic energy + Delta-G solvation = -27311.332511 eV Core-core repulsion = 23560.072403 eV Total energy + Delta-G solvation = -3751.260108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.77186 -39.14409 -36.82075 -35.67305 -34.98123 -33.85766 -32.76962 -32.35675 -30.91464 -29.60907 -29.40907 -26.61687 -25.45517 -24.74260 -23.26765 -22.30782 -21.48232 -20.42715 -19.78906 -19.12297 -17.94530 -17.03395 -16.60115 -15.89444 -15.74531 -15.31217 -14.87877 -14.47236 -14.35634 -14.30631 -13.92445 -13.66428 -13.61387 -13.34628 -13.14313 -13.06772 -12.97362 -12.80321 -12.70377 -12.60435 -12.53317 -12.44469 -12.14162 -12.05172 -11.82979 -11.74038 -11.59117 -11.47101 -11.37755 -11.34760 -10.46902 -10.12918 -10.06630 -9.72493 -9.31210 -8.90696 -8.53178 -8.34558 -8.15669 -7.67556 -6.50337 -4.14705 0.54332 1.99602 2.43187 2.80689 2.97229 3.21102 3.42155 3.50813 3.65321 4.00081 4.07493 4.12247 4.17148 4.28149 4.30649 4.47978 4.48380 4.55412 4.65300 4.74811 4.81466 4.93271 5.03688 5.12804 5.18079 5.23175 5.26574 5.27185 5.36564 5.40534 5.45834 5.48043 5.58016 5.63873 5.76009 5.85449 6.19641 6.27468 6.47449 6.57084 6.64926 6.71868 6.85784 6.96819 6.99446 7.36987 7.43069 7.72549 7.77143 8.30899 8.52976 8.76727 9.00930 9.55083 10.90733 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.024100 B = 0.002389 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.566246 B =11718.698420 C =12305.519115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.142 4.142 3 C 0.096 3.904 4 N -0.430 5.430 5 C 0.007 3.993 6 C -0.083 4.083 7 C -0.161 4.161 8 C -0.197 4.197 9 C 0.100 3.900 10 C -0.154 4.154 11 C 0.271 3.729 12 N -0.437 5.437 13 C 0.562 3.438 14 O -0.554 6.554 15 N -0.696 5.696 16 C 0.235 3.765 17 H 0.051 0.949 18 C -0.157 4.157 19 C -0.612 4.612 20 H 0.061 0.939 21 C 0.036 3.964 22 N -0.903 5.903 23 Si 1.049 2.951 24 H -0.280 1.280 25 H -0.273 1.273 26 H -0.286 1.286 27 C 0.088 3.912 28 C -0.096 4.096 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.392 0.608 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.034 0.966 45 H 0.268 0.732 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.313 5.376 -3.175 32.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C -0.026 4.026 4 N -0.105 5.105 5 C -0.099 4.099 6 C -0.141 4.141 7 C -0.184 4.184 8 C -0.204 4.204 9 C 0.076 3.924 10 C -0.162 4.162 11 C -0.042 4.042 12 N -0.114 5.114 13 C 0.348 3.652 14 O -0.435 6.435 15 N -0.342 5.342 16 C 0.132 3.868 17 H 0.069 0.931 18 C -0.216 4.216 19 C -0.650 4.650 20 H 0.079 0.921 21 C -0.170 4.170 22 N -0.536 5.536 23 Si 0.877 3.123 24 H -0.207 1.207 25 H -0.198 1.198 26 H -0.212 1.212 27 C -0.029 4.029 28 C -0.154 4.154 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.167 0.833 40 H 0.170 0.830 41 H 0.225 0.775 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.088 0.912 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -31.448 5.274 -2.806 32.010 hybrid contribution -0.962 -0.331 -1.570 1.871 sum -32.410 4.944 -4.376 33.076 Atomic orbital electron populations 1.21703 0.94244 1.02638 1.02194 1.21922 0.96782 0.95597 1.03670 1.22025 0.77214 0.98713 1.04634 1.43602 1.06123 1.55619 1.05189 1.20171 0.90330 1.10904 0.88535 1.20331 1.01240 1.02661 0.89840 1.22347 0.95672 1.06574 0.93810 1.18586 0.91262 1.17415 0.93142 1.21231 0.88264 0.84505 0.98428 1.18361 0.95621 1.13284 0.88883 1.25406 0.92898 0.93238 0.92650 1.81037 1.08069 1.10448 1.11844 1.17562 0.82871 0.78755 0.86050 1.90754 1.86599 1.47581 1.18597 1.46228 1.06818 1.62608 1.18558 1.19233 0.81652 0.93332 0.92610 0.93093 1.22386 0.99607 0.98420 1.01163 1.22130 1.02219 1.25935 1.14683 0.92109 1.25715 0.91328 0.96199 1.03771 1.70835 1.30019 1.33528 1.19242 0.83919 0.76491 0.76320 0.75604 1.20698 1.19818 1.21247 1.20937 0.89827 1.03039 0.89091 1.20531 1.02130 1.03554 0.89151 0.92268 0.92335 0.91853 0.91045 0.90992 0.88944 0.88975 0.91081 0.91906 0.90069 0.83348 0.83006 0.77526 0.92862 0.93351 0.94720 0.92160 0.89930 0.91214 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.45 9.91 37.16 0.37 -0.09 16 2 C -0.14 -0.65 6.26 -26.73 -0.17 -0.82 16 3 C 0.10 0.47 5.36 -4.05 -0.02 0.44 16 4 N -0.43 -3.64 2.68 -107.51 -0.29 -3.93 16 5 C 0.01 0.08 6.84 -81.88 -0.56 -0.48 16 6 C -0.08 -0.61 10.04 36.01 0.36 -0.25 16 7 C -0.16 -2.08 9.37 -37.43 -0.35 -2.43 16 8 C -0.20 -2.42 5.90 -104.88 -0.62 -3.04 16 9 C 0.10 1.34 9.18 -38.26 -0.35 0.99 16 10 C -0.15 -2.53 5.90 -104.50 -0.62 -3.15 16 11 C 0.27 4.61 10.93 -22.58 -0.25 4.37 16 12 N -0.44 -7.81 17.29 41.72 0.72 -7.09 16 13 C 0.56 11.35 7.71 -12.73 -0.10 11.25 16 14 O -0.55 -12.28 15.97 5.21 0.08 -12.20 16 15 N -0.70 -15.40 5.02 -56.16 -0.28 -15.68 16 16 C 0.23 5.89 2.14 -69.09 -0.15 5.74 16 17 H 0.05 1.36 5.85 -51.93 -0.30 1.05 16 18 C -0.16 -3.65 9.15 37.16 0.34 -3.31 16 19 C -0.61 -17.29 9.03 -34.44 -0.31 -17.60 16 20 H 0.06 1.82 7.96 -52.49 -0.42 1.40 16 21 C 0.04 1.04 5.38 -17.82 -0.10 0.94 16 22 N -0.90 -27.71 13.70 55.43 0.76 -26.95 16 23 Si 1.05 25.77 25.76 -169.99 -4.38 21.40 16 24 H -0.28 -6.52 6.76 56.52 0.38 -6.14 16 25 H -0.27 -6.45 6.41 56.52 0.36 -6.09 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 27 C 0.09 0.83 6.95 -81.29 -0.56 0.27 16 28 C -0.10 -0.58 9.62 36.00 0.35 -0.23 16 29 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 34 H 0.09 0.32 7.51 -51.93 -0.39 -0.07 16 35 H 0.09 0.35 6.87 -51.93 -0.36 -0.01 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.33 6.92 -51.93 -0.36 -0.03 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.15 2.15 5.26 -52.49 -0.28 1.87 16 40 H 0.15 1.78 7.50 -52.49 -0.39 1.39 16 41 H 0.39 8.37 7.40 -40.82 -0.30 8.07 16 42 H 0.05 1.23 5.11 -51.93 -0.27 0.97 16 43 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.27 8.20 8.72 -40.82 -0.36 7.85 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.30 7.57 -51.93 -0.39 -0.09 16 48 H 0.09 0.55 7.84 -51.93 -0.41 0.14 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -34.27 396.25 -7.45 -41.72 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.30 Total: 4.15 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -2.73 Total: -7.38 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.91 Total: -53.65 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -4.38 Total: 21.40 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.27 -7.45 -41.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096402150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.457 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds