Wall clock time and date at job start Tue Mar 31 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21300 * 120.00401 * 2 1 4 4 C 1.46791 * 119.99783 * 180.02562 * 2 1 3 5 5 C 1.40062 * 120.21310 * 0.29260 * 4 2 1 6 6 C 1.37734 * 119.91427 * 180.29519 * 5 4 2 7 7 Br 1.89098 * 119.83137 * 179.72365 * 6 5 4 8 8 C 1.38708 * 120.33448 * 359.71181 * 6 5 4 9 9 C 1.38200 * 120.42575 * 359.97438 * 8 6 5 10 10 F 1.35095 * 119.95992 * 180.02562 * 9 8 6 11 11 C 1.38901 * 120.07666 * 0.02562 * 9 8 6 12 12 O 1.35668 * 120.16448 * 180.02562 * 11 9 8 13 13 C 1.42895 * 117.00102 * 89.99673 * 12 11 9 14 14 C 1.53006 * 109.47036 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47454 * 59.99696 * 19 17 15 21 21 H 1.48506 * 109.47297 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47261 * 299.99689 * 19 17 15 23 23 H 1.09004 * 109.47538 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47020 * 299.99648 * 1 2 3 25 25 H 1.08999 * 109.47225 * 59.99675 * 1 2 3 26 26 H 1.08001 * 120.04277 * 0.02562 * 5 4 2 27 27 H 1.08005 * 119.78653 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.47626 * 60.00109 * 13 12 11 29 29 H 1.09001 * 109.47255 * 299.99850 * 13 12 11 30 30 H 1.09001 * 109.47002 * 299.99477 * 14 13 12 31 31 H 1.08993 * 109.46955 * 59.99914 * 14 13 12 32 32 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2409 -1.2713 -0.0006 5 6 1.5450 -2.4868 -0.0073 6 6 2.2398 -3.6760 -0.0016 7 35 1.2980 -5.3158 -0.0028 8 6 3.6269 -3.6770 0.0047 9 6 4.3276 -2.4858 0.0048 10 9 5.6785 -2.4977 0.0105 11 6 3.6445 -1.2764 -0.0008 12 8 4.3306 -0.1059 -0.0012 13 6 4.6635 0.4505 -1.2746 14 6 5.4293 1.7600 -1.0745 15 6 5.7798 2.3471 -2.4173 16 1 5.4862 1.8371 -3.3230 17 6 6.4763 3.5348 -2.4898 18 7 6.8342 4.1556 -1.3871 19 14 6.9115 4.2622 -4.1544 20 1 5.6666 4.5291 -4.9188 21 1 7.6546 5.5333 -3.9602 22 1 7.7588 3.3030 -4.9076 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.4651 -2.4916 -0.0125 27 1 4.1628 -4.6147 0.0087 28 1 3.7498 0.6465 -1.8356 29 1 5.2854 -0.2536 -1.8274 30 1 4.8070 2.4639 -0.5219 31 1 6.3429 1.5644 -0.5133 32 1 7.3245 4.9910 -1.4380 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096501885.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:18 Heat of formation + Delta-G solvation = -93.499522 kcal Electronic energy + Delta-G solvation = -19873.813507 eV Core-core repulsion = 16374.907512 eV Total energy + Delta-G solvation = -3498.905996 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 330.005 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.93303 -40.41936 -38.25323 -37.47394 -33.37440 -32.43503 -31.86863 -30.31162 -29.34239 -28.57237 -24.93610 -24.32909 -22.36123 -21.01890 -20.11911 -18.10790 -17.27808 -17.06886 -16.17344 -15.89763 -15.66072 -15.07780 -14.95983 -14.64578 -14.59477 -14.32385 -13.87663 -13.42474 -13.00296 -12.87498 -12.42625 -12.24722 -12.14916 -11.91582 -11.20680 -11.14795 -10.75490 -10.74742 -10.58623 -10.57767 -9.71075 -9.60454 -9.30145 -9.27260 -9.24445 -8.67906 -8.36610 -6.02960 -4.07297 0.22877 0.62854 1.15184 2.19193 3.13044 3.32660 3.36612 3.38900 3.64090 3.90898 4.10715 4.44945 4.48066 4.56862 4.89801 4.94646 5.12811 5.30746 5.32383 5.33023 5.50205 5.59190 5.66920 5.95830 6.04322 6.15742 6.23247 6.73984 7.51575 7.58931 7.76954 7.79819 8.07110 8.31418 8.97848 9.55829 11.08612 Molecular weight = 330.01amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.003170 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.471408 B = 8830.804605 C = 9466.457320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.380 3.620 3 O -0.405 6.405 4 C -0.167 4.167 5 C -0.045 4.045 6 C -0.097 4.097 7 Br -0.036 7.036 8 C -0.088 4.088 9 C 0.072 3.928 10 F -0.118 7.118 11 C 0.157 3.843 12 O -0.318 6.318 13 C 0.087 3.913 14 C 0.030 3.970 15 C -0.525 4.525 16 H 0.056 0.944 17 C 0.061 3.939 18 N -0.889 5.889 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.033 0.967 31 H 0.026 0.974 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.621 -20.833 3.925 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.253 3.747 3 O -0.277 6.277 4 C -0.169 4.169 5 C -0.065 4.065 6 C -0.177 4.177 7 Br 0.050 6.950 8 C -0.109 4.109 9 C 0.051 3.949 10 F -0.096 7.096 11 C 0.110 3.890 12 O -0.235 6.235 13 C 0.015 3.985 14 C -0.007 4.007 15 C -0.563 4.563 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.527 5.527 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.098 0.902 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.170 0.830 27 H 0.169 0.831 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.419 -20.577 4.132 26.043 hybrid contribution 0.708 0.462 -0.993 1.304 sum -14.711 -20.115 3.139 25.117 Atomic orbital electron populations 1.22216 0.93409 1.04381 1.05312 1.22164 0.91522 0.87194 0.73775 1.90770 1.71368 1.33151 1.32374 1.20952 0.92919 0.96001 1.07061 1.21394 1.00699 0.89239 0.95212 1.21302 0.93768 0.92414 1.10183 1.96749 1.74624 1.25861 1.97810 1.21156 0.92844 0.97964 0.98949 1.17946 0.78189 0.93249 1.05533 1.91575 1.27242 1.97132 1.93684 1.19297 0.89772 0.86813 0.93159 1.86073 1.72326 1.32236 1.32862 1.23291 0.98224 0.97110 0.79892 1.19083 0.95107 0.88612 0.97934 1.20924 1.36645 1.07015 0.91704 0.92606 1.24969 0.95629 0.96721 0.96782 1.69970 1.38607 1.17152 1.26988 0.86563 0.78592 0.78426 0.83861 1.20131 1.21107 1.20129 0.90198 0.88604 0.88537 0.83030 0.83087 0.93663 0.94127 0.94852 0.95589 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.72 10.19 36.00 0.37 -1.35 16 2 C 0.38 5.43 7.22 -30.85 -0.22 5.21 16 3 O -0.41 -7.98 14.80 -16.39 -0.24 -8.23 16 4 C -0.17 -2.30 5.88 -104.96 -0.62 -2.92 16 5 C -0.05 -0.46 9.17 -39.08 -0.36 -0.82 16 6 C -0.10 -0.98 6.21 -39.59 -0.25 -1.23 16 7 Br -0.04 -0.29 33.68 -68.01 -2.29 -2.58 16 8 C -0.09 -1.00 9.74 -39.42 -0.38 -1.39 16 9 C 0.07 1.08 7.30 -39.35 -0.29 0.79 16 10 F -0.12 -1.98 17.11 2.25 0.04 -1.94 16 11 C 0.16 2.68 5.75 -38.54 -0.22 2.46 16 12 O -0.32 -6.88 8.33 -40.63 -0.34 -7.22 16 13 C 0.09 2.01 5.37 37.16 0.20 2.21 16 14 C 0.03 0.83 5.34 -27.88 -0.15 0.68 16 15 C -0.52 -15.28 9.11 -34.44 -0.31 -15.59 16 16 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 19 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H 0.08 0.46 5.60 -51.93 -0.29 0.17 16 24 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.15 1.03 5.92 -52.49 -0.31 0.72 16 27 H 0.15 1.37 8.06 -52.48 -0.42 0.94 16 28 H 0.05 1.02 7.53 -51.93 -0.39 0.63 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.03 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 308.67 15.07 4.65 4.65 Total: -1.00 -33.27 308.67 -7.87 -41.13 By element: Atomic # 1 Polarization: -2.77 SS G_CDS: -3.07 Total: -5.84 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -2.33 Total: -10.27 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: 0.74 Total: -26.57 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.58 Total: -15.44 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -2.29 Total: -2.58 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.27 -7.87 -41.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096501885.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.367 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds