Wall clock time and date at job start Tue Mar 31 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46946 * 180.02562 * 11 10 9 13 13 O 1.42100 * 109.46600 * 296.38822 * 12 11 10 14 14 C 1.81397 * 103.00143 * 180.02562 * 12 11 10 15 15 C 1.50695 * 109.47452 * 180.02562 * 14 12 11 16 16 C 1.38263 * 119.99554 * 269.72632 * 15 14 12 17 17 C 1.38220 * 120.02269 * 179.72499 * 16 15 14 18 18 C 1.38236 * 120.00622 * 0.54402 * 17 16 15 19 19 C 1.38305 * 119.99055 * 359.72915 * 18 17 16 20 20 Br 1.89106 * 120.01063 * 180.02562 * 19 18 17 21 21 C 1.38198 * 119.99525 * 89.99496 * 15 14 12 22 22 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 24 24 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 25 25 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 26 26 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 28 28 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 29 29 H 1.09007 * 109.46846 * 299.99983 * 14 12 11 30 30 H 1.09007 * 109.47453 * 59.99610 * 14 12 11 31 31 H 1.08002 * 119.98676 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.99187 * 180.27591 * 17 16 15 33 33 H 1.08001 * 120.00460 * 179.75331 * 18 17 16 34 34 H 1.07999 * 120.00336 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 16 2.6589 -6.3660 -0.0019 13 8 3.4183 -6.3390 -1.2027 14 6 1.5806 -7.8247 -0.0019 15 6 2.4244 -9.0732 -0.0018 16 6 2.8067 -9.6491 -1.1992 17 6 3.5854 -10.7911 -1.1999 18 6 3.9730 -11.3642 -0.0032 19 6 3.5861 -10.7917 1.1949 20 35 4.1166 -11.5749 2.8324 21 6 2.8114 -9.6455 1.1951 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8725 -3.6048 0.8878 26 1 2.8712 -3.6040 -0.8921 27 1 0.8543 -5.0449 0.8894 28 1 0.8525 -5.0447 -0.8905 29 1 0.9517 -7.8115 0.8884 30 1 0.9510 -7.8112 -0.8916 31 1 2.5001 -9.2043 -2.1344 32 1 3.8875 -11.2380 -2.1355 33 1 4.5781 -12.2588 -0.0037 34 1 2.5095 -9.1978 2.1304 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097047729.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:02 Heat of formation + Delta-G solvation = -31.437769 kcal Electronic energy + Delta-G solvation = -16825.268397 eV Core-core repulsion = 13895.266777 eV Total energy + Delta-G solvation = -2930.001620 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 330.003 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.62099 -35.52234 -34.45863 -33.48201 -32.26157 -32.04524 -29.61978 -27.79202 -27.19488 -23.50499 -22.78966 -21.72365 -20.26855 -17.49636 -17.01264 -16.34469 -15.89814 -15.46798 -15.32823 -14.80489 -14.45704 -14.23408 -13.82730 -13.53527 -13.33226 -13.19588 -12.41685 -12.16084 -11.99760 -11.67734 -11.49382 -11.38692 -11.15848 -10.88890 -10.81253 -10.70256 -10.58781 -10.27964 -9.82117 -9.52983 -9.18133 -9.07860 -8.78942 -8.37570 -8.00646 -6.02548 -4.05219 0.73043 0.88782 1.31143 1.72259 2.75871 3.31442 3.35089 3.37518 3.41153 3.88062 4.33869 4.44665 4.47979 4.72601 4.90173 4.96334 5.10977 5.32270 5.33209 5.42882 5.48405 5.56705 5.66829 5.84532 6.01443 6.15840 6.17858 6.47750 6.47884 6.66762 7.01508 7.63280 7.75490 7.96738 8.38510 9.01743 9.59195 11.08744 Molecular weight = 330.00amu Principal moments of inertia in cm(-1) A = 0.027417 B = 0.002187 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.033149 B =12799.019765 C =13318.291033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.094 4.094 11 C -0.433 4.433 12 S 1.232 4.768 13 O -0.841 6.841 14 C -0.419 4.419 15 C -0.051 4.051 16 C -0.097 4.097 17 C -0.109 4.109 18 C -0.097 4.097 19 C -0.087 4.087 20 Br -0.052 7.052 21 C -0.089 4.089 22 H 0.261 0.739 23 H 0.014 0.986 24 H 0.020 0.980 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -27.849 6.380 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.572 4.572 12 S 1.433 4.567 13 O -0.836 6.836 14 C -0.552 4.552 15 C -0.053 4.053 16 C -0.116 4.116 17 C -0.128 4.128 18 C -0.117 4.117 19 C -0.166 4.166 20 Br 0.033 6.967 21 C -0.110 4.110 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.133 0.867 28 H 0.100 0.900 29 H 0.147 0.853 30 H 0.116 0.884 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.070 -28.012 6.975 29.721 hybrid contribution -1.247 1.109 -2.276 2.822 sum 5.823 -26.903 4.699 27.924 Atomic orbital electron populations 1.69967 1.06094 1.26657 1.50872 1.25032 0.94868 0.99329 0.95252 0.86578 0.79883 0.83322 0.78148 1.20685 1.21182 1.19734 1.21275 0.93165 0.91023 1.50641 0.92521 1.19095 0.93794 0.90907 0.97352 1.21319 0.98975 0.91814 1.01146 1.27684 1.11547 1.10768 1.07222 1.70749 0.87988 0.85414 1.12570 1.93114 1.55928 1.83757 1.50790 1.26850 1.09915 1.09903 1.08540 1.19148 0.97900 0.95271 0.92979 1.21280 0.96967 0.95252 0.98101 1.21148 0.97776 0.95907 0.97922 1.21112 0.99625 1.00053 0.90946 1.21745 1.04032 0.99016 0.91841 1.96730 1.90651 1.82202 1.27085 1.21044 0.97106 0.94247 0.98600 0.92977 0.96767 0.96213 0.92066 0.92805 0.86745 0.90028 0.85334 0.88429 0.85493 0.85003 0.85002 0.84083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 10 C -0.09 -1.89 5.16 -26.73 -0.14 -2.02 16 11 C -0.43 -6.61 5.92 37.16 0.22 -6.39 16 12 S 1.23 15.31 13.14 -107.50 -1.41 13.90 16 13 O -0.84 -15.66 18.14 -35.23 -0.64 -16.30 16 14 C -0.42 -4.08 6.05 36.00 0.22 -3.86 16 15 C -0.05 -0.53 5.14 -104.63 -0.54 -1.06 16 16 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 17 C -0.11 -0.99 10.05 -39.59 -0.40 -1.39 16 18 C -0.10 -0.85 9.79 -39.56 -0.39 -1.24 16 19 C -0.09 -0.80 6.22 -39.52 -0.25 -1.05 16 20 Br -0.05 -0.43 33.70 -68.01 -2.29 -2.72 16 21 C -0.09 -0.81 9.44 -39.56 -0.37 -1.19 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.11 1.44 8.14 -51.92 -0.42 1.02 16 28 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 29 H 0.13 0.87 8.09 -51.92 -0.42 0.45 16 30 H 0.10 1.01 8.08 -51.92 -0.42 0.59 16 31 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -35.33 329.45 -10.85 -46.18 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -4.61 Total: -3.76 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: -2.58 Total: -32.72 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.64 Total: -16.30 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 15.31 SS G_CDS: -1.41 Total: 13.90 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.29 Total: -2.72 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.33 -10.85 -46.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097047729.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.742 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds