Wall clock time and date at job start Tue Mar 31 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46946 * 180.02562 * 11 10 9 13 13 O 1.42100 * 109.46600 * 296.38822 * 12 11 10 14 14 C 1.81397 * 103.00143 * 180.02562 * 12 11 10 15 15 C 1.50695 * 109.47452 * 180.02562 * 14 12 11 16 16 C 1.38263 * 119.99554 * 269.72632 * 15 14 12 17 17 C 1.38220 * 120.02269 * 179.72499 * 16 15 14 18 18 C 1.38236 * 120.00622 * 0.54402 * 17 16 15 19 19 C 1.38305 * 119.99055 * 359.72915 * 18 17 16 20 20 Br 1.89106 * 120.01063 * 180.02562 * 19 18 17 21 21 C 1.38198 * 119.99525 * 89.99496 * 15 14 12 22 22 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 24 24 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 25 25 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 26 26 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 28 28 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 29 29 H 1.09007 * 109.46846 * 299.99983 * 14 12 11 30 30 H 1.09007 * 109.47453 * 59.99610 * 14 12 11 31 31 H 1.08002 * 119.98676 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.99187 * 180.27591 * 17 16 15 33 33 H 1.08001 * 120.00460 * 179.75331 * 18 17 16 34 34 H 1.07999 * 120.00336 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 16 2.6589 -6.3660 -0.0019 13 8 3.4183 -6.3390 -1.2027 14 6 1.5806 -7.8247 -0.0019 15 6 2.4244 -9.0732 -0.0018 16 6 2.8067 -9.6491 -1.1992 17 6 3.5854 -10.7911 -1.1999 18 6 3.9730 -11.3642 -0.0032 19 6 3.5861 -10.7917 1.1949 20 35 4.1166 -11.5749 2.8324 21 6 2.8114 -9.6455 1.1951 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8725 -3.6048 0.8878 26 1 2.8712 -3.6040 -0.8921 27 1 0.8543 -5.0449 0.8894 28 1 0.8525 -5.0447 -0.8905 29 1 0.9517 -7.8115 0.8884 30 1 0.9510 -7.8112 -0.8916 31 1 2.5001 -9.2043 -2.1344 32 1 3.8875 -11.2380 -2.1355 33 1 4.5781 -12.2588 -0.0037 34 1 2.5095 -9.1978 2.1304 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097047729.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:02 Heat of formation + Delta-G solvation = -53.294207 kcal Electronic energy + Delta-G solvation = -16826.216163 eV Core-core repulsion = 13895.266777 eV Total energy + Delta-G solvation = -2930.949386 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 330.003 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.32502 -36.81918 -36.30393 -34.22220 -34.01873 -32.95574 -30.30528 -29.46864 -28.17245 -25.37449 -23.49460 -22.66106 -21.86998 -18.73126 -18.28787 -17.75863 -16.70358 -16.69047 -16.30437 -16.20307 -16.10002 -15.35189 -14.69348 -14.45009 -14.31782 -14.26289 -13.98522 -13.83505 -13.35850 -12.98207 -12.71089 -12.55179 -12.48668 -12.37696 -12.11096 -11.96407 -11.74064 -11.59766 -11.31090 -11.23949 -10.93584 -10.57174 -9.86970 -9.71183 -9.08732 -8.21769 -6.33079 -0.06544 0.17166 0.63057 0.76812 1.39668 1.40788 1.52387 1.73141 2.40300 2.61652 2.83986 3.11293 3.55939 3.80340 4.05974 4.06596 4.15706 4.21385 4.25642 4.43558 4.58569 4.63256 4.81133 4.86169 4.97688 5.15753 5.16501 5.19112 5.29027 5.44529 5.49534 5.69738 5.77689 5.83139 6.22711 6.83839 7.36378 8.89820 Molecular weight = 330.00amu Principal moments of inertia in cm(-1) A = 0.027417 B = 0.002187 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.033149 B =12799.019765 C =13318.291033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.089 4.089 11 C -0.439 4.439 12 S 1.290 4.710 13 O -0.906 6.906 14 C -0.406 4.406 15 C -0.068 4.068 16 C -0.119 4.119 17 C -0.114 4.114 18 C -0.097 4.097 19 C -0.098 4.098 20 Br -0.043 7.043 21 C -0.088 4.088 22 H 0.264 0.736 23 H -0.020 1.020 24 H 0.009 0.991 25 H 0.084 0.916 26 H 0.030 0.970 27 H 0.146 0.854 28 H 0.064 0.936 29 H 0.169 0.831 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.768 -28.966 7.925 30.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.128 4.128 11 C -0.576 4.576 12 S 1.492 4.508 13 O -0.902 6.902 14 C -0.542 4.542 15 C -0.071 4.071 16 C -0.139 4.139 17 C -0.132 4.132 18 C -0.117 4.117 19 C -0.177 4.177 20 Br 0.043 6.957 21 C -0.109 4.109 22 H 0.073 0.927 23 H -0.002 1.002 24 H 0.028 0.972 25 H 0.103 0.897 26 H 0.049 0.951 27 H 0.164 0.836 28 H 0.083 0.917 29 H 0.187 0.813 30 H 0.111 0.889 31 H 0.135 0.865 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.812 -29.094 8.519 31.306 hybrid contribution -1.508 1.271 -2.734 3.371 sum 6.304 -27.823 5.785 29.109 Atomic orbital electron populations 1.70090 1.07765 1.27823 1.51684 1.25986 0.95810 1.03379 0.94669 0.85462 0.78927 0.78441 0.78338 1.20310 1.20366 1.18354 1.21761 0.93669 0.92562 1.50604 0.92190 1.19024 0.94319 0.92680 0.95097 1.21118 0.98016 0.92483 1.01163 1.27700 1.12040 1.09834 1.08005 1.69990 0.86298 0.84543 1.09920 1.93000 1.59030 1.85053 1.53112 1.26717 1.09439 1.07626 1.10461 1.19228 0.98769 0.95677 0.93380 1.21442 0.98018 0.96304 0.98142 1.21384 0.97306 0.95459 0.99087 1.21393 0.99217 1.00439 0.90666 1.21954 1.04087 0.99250 0.92447 1.96744 1.90566 1.82041 1.26369 1.21329 0.96396 0.94048 0.99083 0.92713 1.00169 0.97235 0.89710 0.95111 0.83580 0.91722 0.81293 0.88861 0.86543 0.83216 0.83178 0.81583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.09 -3.63 5.16 30.59 0.16 -3.47 16 11 C -0.44 -13.12 5.92 71.98 0.43 -12.70 16 12 S 1.29 30.57 13.14 -56.49 -0.74 29.83 16 13 O -0.91 -34.12 18.14 -148.98 -2.70 -36.82 16 14 C -0.41 -7.01 6.05 71.23 0.43 -6.57 16 15 C -0.07 -1.29 5.14 -19.87 -0.10 -1.39 16 16 C -0.12 -2.49 9.70 22.27 0.22 -2.27 16 17 C -0.11 -1.93 10.05 22.26 0.22 -1.71 16 18 C -0.10 -1.50 9.79 22.29 0.22 -1.29 16 19 C -0.10 -1.58 6.22 22.31 0.14 -1.44 16 20 Br -0.04 -0.61 33.70 -20.37 -0.69 -1.29 16 21 C -0.09 -1.37 9.44 22.29 0.21 -1.16 16 22 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 23 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 24 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 26 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.15 3.37 8.14 -2.39 -0.02 3.35 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.17 1.57 8.09 -2.39 -0.02 1.55 16 30 H 0.09 1.79 8.08 -2.39 -0.02 1.77 16 31 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 34 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -78.41 329.45 2.02 -76.39 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: 1.08 Total: 3.46 kcal Atomic # 6 Polarization: -64.15 SS G_CDS: 2.76 Total: -61.38 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.28 Total: -56.74 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -2.70 Total: -36.82 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 30.57 SS G_CDS: -0.74 Total: 29.83 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -0.69 Total: -1.29 kcal Total: -78.41 2.02 -76.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097047729.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.094 kcal (2) G-P(sol) polarization free energy of solvation -78.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds