Wall clock time and date at job start Tue Mar 31 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00082 * 2 1 4 4 H 1.48501 * 109.46708 * 240.00067 * 3 2 1 5 5 H 1.48502 * 109.46908 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46952 * 120.00225 * 3 2 1 7 7 C 1.37872 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00413 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00217 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46652 * 179.97438 * 10 9 7 12 12 S 1.81405 * 109.46865 * 180.02562 * 11 10 9 13 13 O 1.42105 * 109.47177 * 63.60865 * 12 11 10 14 14 C 1.81392 * 103.00113 * 179.97438 * 12 11 10 15 15 C 1.50706 * 109.47198 * 179.97438 * 14 12 11 16 16 C 1.38261 * 119.99335 * 269.97909 * 15 14 12 17 17 C 1.38215 * 120.02147 * 179.97438 * 16 15 14 18 18 C 1.38244 * 120.00870 * 0.03804 * 17 16 15 19 19 C 1.38303 * 119.98918 * 359.97438 * 18 17 16 20 20 Br 1.89102 * 120.01391 * 180.02562 * 19 18 17 21 21 C 1.38191 * 119.99202 * 90.00223 * 15 14 12 22 22 H 0.97001 * 119.99640 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47358 * 59.99500 * 9 7 2 24 24 H 1.09009 * 109.46773 * 299.99742 * 9 7 2 25 25 H 1.08998 * 109.47440 * 59.99927 * 10 9 7 26 26 H 1.08996 * 109.47127 * 299.99347 * 10 9 7 27 27 H 1.08995 * 109.47436 * 60.00320 * 11 10 9 28 28 H 1.08996 * 109.46939 * 299.99607 * 11 10 9 29 29 H 1.09007 * 109.47262 * 59.99871 * 14 12 11 30 30 H 1.08996 * 109.47425 * 300.00045 * 14 12 11 31 31 H 1.08002 * 119.99455 * 359.97438 * 16 15 14 32 32 H 1.07997 * 119.99879 * 180.02562 * 17 16 15 33 33 H 1.08002 * 120.00771 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.00872 * 0.27007 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 16 2.6590 -6.3659 -0.0009 13 8 3.4185 -6.3389 1.1998 14 6 1.5807 -7.8246 -0.0009 15 6 2.4247 -9.0732 -0.0007 16 6 2.8115 -9.6462 -1.1981 17 6 3.5860 -10.7910 -1.1985 18 6 3.9735 -11.3641 -0.0017 19 6 3.5866 -10.7914 1.1963 20 35 4.1169 -11.5743 2.8339 21 6 2.8114 -9.6454 1.1963 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6241 -2.5575 0.8881 25 1 2.8713 -3.6048 0.8890 26 1 2.8726 -3.6040 -0.8909 27 1 0.8540 -5.0447 -0.8922 28 1 0.8532 -5.0449 0.8877 29 1 0.9519 -7.8117 -0.8913 30 1 0.9511 -7.8111 0.8887 31 1 2.5085 -9.1991 -2.1334 32 1 3.8883 -11.2380 -2.1340 33 1 4.5790 -12.2584 -0.0021 34 1 2.5052 -9.2004 2.1315 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097047730.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:05 Heat of formation + Delta-G solvation = -31.337296 kcal Electronic energy + Delta-G solvation = -16840.650977 eV Core-core repulsion = 13910.653714 eV Total energy + Delta-G solvation = -2929.997263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 330.003 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.61429 -35.51021 -34.45610 -33.47527 -32.23599 -32.04345 -29.60102 -27.78973 -27.19176 -23.50382 -22.79293 -21.70008 -20.26720 -17.49096 -17.00359 -16.33931 -15.90022 -15.46292 -15.32201 -14.79254 -14.45747 -14.22897 -13.82110 -13.52499 -13.31175 -13.19766 -12.40564 -12.17923 -11.97562 -11.68225 -11.47385 -11.39364 -11.14417 -10.86691 -10.80312 -10.71905 -10.54625 -10.27052 -9.81614 -9.53161 -9.19209 -9.06685 -8.77962 -8.37110 -8.00647 -6.02242 -4.05053 0.73183 0.89797 1.35642 1.73344 2.76280 3.32947 3.35180 3.37011 3.40048 3.89060 4.32988 4.44739 4.50081 4.74263 4.87883 4.95296 5.11467 5.33310 5.34755 5.43478 5.48725 5.56739 5.67337 5.88785 5.99152 6.15404 6.16230 6.47999 6.48861 6.66950 7.01680 7.63190 7.75673 7.96890 8.38639 9.01691 9.59304 11.08997 Molecular weight = 330.00amu Principal moments of inertia in cm(-1) A = 0.029695 B = 0.002194 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.692778 B =12758.836248 C =13264.558762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.094 4.094 11 C -0.434 4.434 12 S 1.232 4.768 13 O -0.839 6.839 14 C -0.419 4.419 15 C -0.052 4.052 16 C -0.102 4.102 17 C -0.110 4.110 18 C -0.098 4.098 19 C -0.085 4.085 20 Br -0.054 7.054 21 C -0.084 4.084 22 H 0.261 0.739 23 H 0.019 0.981 24 H 0.014 0.986 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.043 -27.840 -3.637 28.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.572 4.572 12 S 1.433 4.567 13 O -0.835 6.835 14 C -0.552 4.552 15 C -0.054 4.054 16 C -0.121 4.121 17 C -0.129 4.129 18 C -0.118 4.118 19 C -0.164 4.164 20 Br 0.032 6.968 21 C -0.105 4.105 22 H 0.071 0.929 23 H 0.038 0.962 24 H 0.032 0.968 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.147 0.853 30 H 0.115 0.885 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.067 -28.001 -2.980 29.032 hybrid contribution -1.235 1.111 1.579 2.292 sum 5.831 -26.890 -1.401 27.550 Atomic orbital electron populations 1.69956 1.06091 1.26774 1.50776 1.25028 0.94867 0.99312 0.95237 0.86638 0.79582 0.82976 0.78713 1.20100 1.21278 1.20222 1.21238 0.93130 0.91039 1.50785 0.92572 1.19092 0.93787 0.90893 0.97342 1.21319 0.98974 0.91822 1.01136 1.27685 1.11561 1.10783 1.07208 1.70684 0.87993 0.85418 1.12653 1.93130 1.55882 1.83706 1.50736 1.26857 1.09930 1.09924 1.08521 1.19162 0.97907 0.95315 0.93006 1.21259 0.97411 0.95663 0.97787 1.21165 0.98011 0.95993 0.97762 1.21125 0.99662 1.00097 0.90952 1.21755 1.03829 0.98892 0.91954 1.96723 1.90625 1.81956 1.27528 1.21075 0.96652 0.93835 0.98912 0.92916 0.96239 0.96759 0.92803 0.92080 0.86765 0.90034 0.85252 0.88545 0.84333 0.84708 0.85014 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 10 C -0.09 -1.88 5.16 -26.73 -0.14 -2.02 16 11 C -0.43 -6.61 5.92 37.16 0.22 -6.39 16 12 S 1.23 15.25 13.14 -107.50 -1.41 13.84 16 13 O -0.84 -15.86 18.14 -35.23 -0.64 -16.50 16 14 C -0.42 -4.08 6.05 36.01 0.22 -3.86 16 15 C -0.05 -0.53 5.14 -104.63 -0.54 -1.07 16 16 C -0.10 -0.79 9.70 -39.58 -0.38 -1.18 16 17 C -0.11 -0.81 10.05 -39.59 -0.40 -1.21 16 18 C -0.10 -0.86 9.79 -39.56 -0.39 -1.24 16 19 C -0.08 -0.93 6.22 -39.51 -0.25 -1.17 16 20 Br -0.05 -0.56 33.70 -68.01 -2.29 -2.86 16 21 C -0.08 -1.00 9.44 -39.56 -0.37 -1.38 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 25 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 28 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.13 0.83 8.09 -51.92 -0.42 0.41 16 30 H 0.10 1.03 8.09 -51.93 -0.42 0.61 16 31 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 32 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -35.97 329.45 -10.85 -46.82 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -4.61 Total: -4.11 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: -2.58 Total: -32.62 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.22 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.64 Total: -16.50 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 15.25 SS G_CDS: -1.41 Total: 13.84 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.29 Total: -2.86 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.97 -10.85 -46.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097047730.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.481 kcal (2) G-P(sol) polarization free energy of solvation -35.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds