Wall clock time and date at job start Tue Mar 31 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00082 * 2 1 4 4 H 1.48501 * 109.46708 * 240.00067 * 3 2 1 5 5 H 1.48502 * 109.46908 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46952 * 120.00225 * 3 2 1 7 7 C 1.37872 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00413 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00217 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46652 * 179.97438 * 10 9 7 12 12 S 1.81405 * 109.46865 * 180.02562 * 11 10 9 13 13 O 1.42105 * 109.47177 * 63.60865 * 12 11 10 14 14 C 1.81392 * 103.00113 * 179.97438 * 12 11 10 15 15 C 1.50706 * 109.47198 * 179.97438 * 14 12 11 16 16 C 1.38261 * 119.99335 * 269.97909 * 15 14 12 17 17 C 1.38215 * 120.02147 * 179.97438 * 16 15 14 18 18 C 1.38244 * 120.00870 * 0.03804 * 17 16 15 19 19 C 1.38303 * 119.98918 * 359.97438 * 18 17 16 20 20 Br 1.89102 * 120.01391 * 180.02562 * 19 18 17 21 21 C 1.38191 * 119.99202 * 90.00223 * 15 14 12 22 22 H 0.97001 * 119.99640 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47358 * 59.99500 * 9 7 2 24 24 H 1.09009 * 109.46773 * 299.99742 * 9 7 2 25 25 H 1.08998 * 109.47440 * 59.99927 * 10 9 7 26 26 H 1.08996 * 109.47127 * 299.99347 * 10 9 7 27 27 H 1.08995 * 109.47436 * 60.00320 * 11 10 9 28 28 H 1.08996 * 109.46939 * 299.99607 * 11 10 9 29 29 H 1.09007 * 109.47262 * 59.99871 * 14 12 11 30 30 H 1.08996 * 109.47425 * 300.00045 * 14 12 11 31 31 H 1.08002 * 119.99455 * 359.97438 * 16 15 14 32 32 H 1.07997 * 119.99879 * 180.02562 * 17 16 15 33 33 H 1.08002 * 120.00771 * 180.02562 * 18 17 16 34 34 H 1.08000 * 120.00872 * 0.27007 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 16 2.6590 -6.3659 -0.0009 13 8 3.4185 -6.3389 1.1998 14 6 1.5807 -7.8246 -0.0009 15 6 2.4247 -9.0732 -0.0007 16 6 2.8115 -9.6462 -1.1981 17 6 3.5860 -10.7910 -1.1985 18 6 3.9735 -11.3641 -0.0017 19 6 3.5866 -10.7914 1.1963 20 35 4.1169 -11.5743 2.8339 21 6 2.8114 -9.6454 1.1963 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6241 -2.5575 0.8881 25 1 2.8713 -3.6048 0.8890 26 1 2.8726 -3.6040 -0.8909 27 1 0.8540 -5.0447 -0.8922 28 1 0.8532 -5.0449 0.8877 29 1 0.9519 -7.8117 -0.8913 30 1 0.9511 -7.8111 0.8887 31 1 2.5085 -9.1991 -2.1334 32 1 3.8883 -11.2380 -2.1340 33 1 4.5790 -12.2584 -0.0021 34 1 2.5052 -9.2004 2.1315 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097047730.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:05 Heat of formation + Delta-G solvation = -54.349643 kcal Electronic energy + Delta-G solvation = -16841.648868 eV Core-core repulsion = 13910.653714 eV Total energy + Delta-G solvation = -2930.995153 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 330.003 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.29711 -36.82295 -36.30329 -34.22179 -34.01891 -32.92470 -30.35179 -29.46654 -28.15029 -25.37281 -23.47882 -22.61886 -21.86164 -18.72429 -18.27765 -17.72859 -16.70201 -16.69142 -16.29199 -16.18413 -16.09613 -15.33364 -14.68060 -14.43438 -14.30938 -14.24342 -13.99653 -13.84220 -13.34448 -12.97575 -12.68417 -12.57220 -12.51973 -12.33476 -12.08130 -11.99653 -11.73776 -11.59429 -11.34433 -11.31642 -10.92933 -10.56444 -9.90866 -9.67491 -9.09398 -8.21613 -6.33098 -0.01423 0.15923 0.59782 0.79487 1.39506 1.42671 1.50573 1.74153 2.40334 2.65881 2.85769 3.11300 3.55622 3.83730 4.04377 4.07384 4.18517 4.22418 4.33131 4.46082 4.63244 4.71825 4.76569 4.86344 4.99769 5.15966 5.19092 5.20133 5.38648 5.46784 5.49311 5.69730 5.83050 5.87313 6.22665 6.83635 7.36343 8.89749 Molecular weight = 330.00amu Principal moments of inertia in cm(-1) A = 0.029695 B = 0.002194 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.692778 B =12758.836248 C =13264.558762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.089 4.089 11 C -0.439 4.439 12 S 1.295 4.705 13 O -0.910 6.910 14 C -0.406 4.406 15 C -0.072 4.072 16 C -0.092 4.092 17 C -0.104 4.104 18 C -0.100 4.100 19 C -0.105 4.105 20 Br -0.064 7.064 21 C -0.114 4.114 22 H 0.264 0.736 23 H 0.010 0.990 24 H -0.021 1.021 25 H 0.028 0.972 26 H 0.086 0.914 27 H 0.149 0.851 28 H 0.061 0.939 29 H 0.177 0.823 30 H 0.084 0.916 31 H 0.182 0.818 32 H 0.174 0.826 33 H 0.149 0.851 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.746 -28.953 -6.563 30.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.587 4.587 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.128 4.128 11 C -0.576 4.576 12 S 1.497 4.503 13 O -0.906 6.906 14 C -0.542 4.542 15 C -0.074 4.074 16 C -0.111 4.111 17 C -0.122 4.122 18 C -0.120 4.120 19 C -0.184 4.184 20 Br 0.021 6.979 21 C -0.135 4.135 22 H 0.073 0.927 23 H 0.029 0.971 24 H -0.003 1.003 25 H 0.047 0.953 26 H 0.105 0.895 27 H 0.167 0.833 28 H 0.080 0.920 29 H 0.194 0.806 30 H 0.103 0.897 31 H 0.199 0.801 32 H 0.191 0.809 33 H 0.167 0.833 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.784 -29.076 -5.902 30.673 hybrid contribution -1.503 1.288 2.449 3.149 sum 6.280 -27.788 -3.452 28.697 Atomic orbital electron populations 1.70084 1.07763 1.27895 1.51601 1.25984 0.95808 1.03372 0.94643 0.85518 0.78334 0.78070 0.79266 1.18418 1.20695 1.19841 1.21735 0.93670 0.92579 1.50753 0.92188 1.19023 0.94314 0.92677 0.95077 1.21119 0.98010 0.92494 1.01148 1.27709 1.12061 1.09882 1.07970 1.69789 0.86182 0.84469 1.09822 1.93012 1.59281 1.85079 1.53246 1.26744 1.09426 1.07700 1.10378 1.19309 0.98854 0.95736 0.93513 1.21772 0.95896 0.95249 0.98185 1.21669 0.96576 0.95394 0.98549 1.21484 0.99309 1.00536 0.90711 1.21902 1.04731 0.99206 0.92570 1.96693 1.90664 1.81897 1.28604 1.21087 0.98407 0.95089 0.98934 0.92703 0.97133 1.00309 0.95331 0.89502 0.83337 0.92020 0.80561 0.89727 0.80118 0.80866 0.83285 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.55 -31.71 9.11 25.60 0.23 -31.48 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.09 -3.63 5.16 30.60 0.16 -3.47 16 11 C -0.44 -13.12 5.92 71.98 0.43 -12.70 16 12 S 1.29 30.47 13.14 -56.49 -0.74 29.73 16 13 O -0.91 -35.24 18.14 -148.98 -2.70 -37.95 16 14 C -0.41 -6.93 6.05 71.24 0.43 -6.49 16 15 C -0.07 -1.33 5.14 -19.87 -0.10 -1.43 16 16 C -0.09 -1.02 9.70 22.27 0.22 -0.81 16 17 C -0.10 -1.07 10.05 22.27 0.22 -0.84 16 18 C -0.10 -1.51 9.79 22.29 0.22 -1.29 16 19 C -0.10 -2.24 6.22 22.31 0.14 -2.10 16 20 Br -0.06 -1.37 33.70 -20.37 -0.69 -2.05 16 21 C -0.11 -2.74 9.44 22.29 0.21 -2.53 16 22 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 23 H 0.01 0.55 8.14 -2.39 -0.02 0.54 16 24 H -0.02 -1.27 8.14 -2.38 -0.02 -1.29 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 27 H 0.15 3.34 8.14 -2.39 -0.02 3.32 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.18 1.35 8.09 -2.39 -0.02 1.33 16 30 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 31 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 32 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 33 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 34 H 0.10 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -82.77 329.45 2.02 -80.75 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: 1.08 Total: 0.84 kcal Atomic # 6 Polarization: -63.87 SS G_CDS: 2.76 Total: -61.10 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.28 Total: -56.77 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -2.70 Total: -37.95 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 30.47 SS G_CDS: -0.74 Total: 29.73 kcal Atomic # 35 Polarization: -1.37 SS G_CDS: -0.69 Total: -2.05 kcal Total: -82.77 2.02 -80.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097047730.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.398 kcal (2) G-P(sol) polarization free energy of solvation -82.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds