Wall clock time and date at job start Tue Mar 31 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48499 * 109.47287 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46896 * 300.00269 * 3 2 1 6 6 H 1.48501 * 109.46845 * 59.99898 * 3 2 1 7 7 C 1.39895 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99548 * 197.79672 * 7 2 1 9 9 C 1.41217 * 119.99935 * 17.78648 * 7 2 1 10 10 C 1.40831 * 120.17754 * 24.71470 * 9 7 2 11 11 C 1.36444 * 119.80941 * 180.22537 * 10 9 7 12 12 C 1.39311 * 120.18284 * 359.50037 * 11 10 9 13 13 O 1.35672 * 119.81787 * 180.27547 * 12 11 10 14 14 C 1.42899 * 117.00494 * 179.97438 * 13 12 11 15 15 F 1.39903 * 109.47050 * 300.00241 * 14 13 12 16 16 F 1.39901 * 109.46586 * 59.99736 * 14 13 12 17 17 C 1.52993 * 109.47626 * 180.02562 * 14 13 12 18 18 H 1.09006 * 109.47174 * 59.99732 * 17 14 13 19 19 F 1.39903 * 109.47070 * 300.00189 * 17 14 13 20 20 O 1.42890 * 109.47437 * 179.97438 * 17 14 13 21 21 C 1.42899 * 114.00331 * 179.97438 * 20 17 14 22 22 F 1.39901 * 109.46849 * 60.00439 * 21 20 17 23 23 F 1.39904 * 109.47524 * 180.02562 * 21 20 17 24 24 F 1.39905 * 109.47461 * 300.00437 * 21 20 17 25 25 C 1.39318 * 120.36502 * 0.24918 * 12 11 10 26 26 C 1.36435 * 120.18514 * 0.02562 * 25 12 11 27 27 H 0.97001 * 120.00430 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.09733 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.90369 * 179.76915 * 11 10 9 30 30 H 1.07993 * 119.90212 * 180.02562 * 25 12 11 31 31 H 1.07999 * 120.09330 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8839 2.3964 -1.2125 6 1 1.8840 2.3964 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0496 -1.2339 0.2853 9 6 1.3529 -2.4051 -0.3747 10 6 0.2240 -2.3592 -1.2155 11 6 -0.4062 -3.5167 -1.5685 12 6 0.0701 -4.7422 -1.1081 13 8 -0.5590 -5.8890 -1.4682 14 6 -0.0193 -7.1116 -0.9622 15 9 1.3019 -7.2544 -1.3993 16 9 -0.0481 -7.0903 0.4364 17 6 -0.8546 -8.2876 -1.4722 18 1 -0.8318 -8.3039 -2.5619 19 9 -2.1761 -8.1451 -1.0355 20 8 -0.3146 -9.5101 -0.9666 21 6 -1.0257 -10.6768 -1.3853 22 9 -1.0018 -10.7613 -2.7816 23 9 -0.4202 -11.8133 -0.8386 24 9 -2.3514 -10.5979 -0.9455 25 6 1.1893 -4.7966 -0.2802 26 6 1.8278 -3.6480 0.0867 27 1 -0.4851 0.8400 -0.0004 28 1 -0.1436 -1.4104 -1.5773 29 1 -1.2742 -3.4831 -2.2103 30 1 1.5525 -5.7507 0.0721 31 1 2.6955 -3.6920 0.7282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098210919.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:15 Heat of formation + Delta-G solvation = -387.251391 kcal Electronic energy + Delta-G solvation = -28618.083110 eV Core-core repulsion = 23227.213343 eV Total energy + Delta-G solvation = -5390.869767 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.048 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.48908 -50.72812 -49.71692 -49.16581 -49.08714 -48.58427 -40.56159 -39.61894 -38.39823 -35.38292 -32.01407 -31.49582 -30.52885 -27.21906 -26.39411 -24.83827 -23.04948 -22.84111 -21.25860 -20.53216 -20.41685 -19.80903 -19.66911 -19.49658 -18.76302 -17.82904 -17.60149 -17.12708 -17.04583 -16.14500 -15.93134 -15.87895 -15.62930 -15.55982 -15.50754 -15.42367 -15.29226 -15.26445 -15.06989 -14.89095 -14.87458 -14.68122 -14.45437 -14.18188 -14.12759 -13.72608 -13.65793 -13.06122 -12.82545 -12.75304 -12.44943 -12.24433 -11.70708 -11.38723 -11.02327 -9.68190 -9.19464 -8.69739 -6.35536 -0.15812 0.76786 0.93432 1.13944 1.41231 1.48125 1.56485 1.57828 2.00971 2.20952 2.37213 2.56926 2.64052 2.74197 2.80586 2.91566 3.56804 3.68410 4.03949 4.12343 4.16455 4.57705 4.94047 5.06533 5.14401 5.32077 5.51723 5.70084 5.94300 6.07930 6.23701 6.56062 6.84905 6.89356 8.27748 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.042072 B = 0.002682 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.363392 B =10438.683616 C =10675.909498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.036 3.964 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.267 1.267 7 C -0.488 4.488 8 H 0.080 0.920 9 C 0.072 3.928 10 C -0.160 4.160 11 C -0.096 4.096 12 C -0.050 4.050 13 O -0.306 6.306 14 C 0.428 3.572 15 F -0.175 7.175 16 F -0.188 7.188 17 C 0.263 3.737 18 H 0.190 0.810 19 F -0.170 7.170 20 O -0.382 6.382 21 C 0.611 3.389 22 F -0.157 7.157 23 F -0.127 7.127 24 F -0.161 7.161 25 C -0.145 4.145 26 C -0.215 4.215 27 H 0.292 0.708 28 H 0.120 0.880 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.960 -15.994 -5.086 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.191 1.191 7 C -0.517 4.517 8 H 0.098 0.902 9 C 0.070 3.930 10 C -0.180 4.180 11 C -0.115 4.115 12 C -0.092 4.092 13 O -0.226 6.226 14 C 0.353 3.647 15 F -0.157 7.157 16 F -0.170 7.170 17 C 0.189 3.811 18 H 0.206 0.794 19 F -0.151 7.151 20 O -0.308 6.308 21 C 0.521 3.479 22 F -0.139 7.139 23 F -0.109 7.109 24 F -0.143 7.143 25 C -0.163 4.163 26 C -0.234 4.234 27 H 0.103 0.897 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.133 0.867 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.198 -15.902 -5.041 16.986 hybrid contribution 0.322 0.453 0.510 0.755 sum -2.875 -15.449 -4.531 16.354 Atomic orbital electron populations 1.69862 1.08992 1.30984 1.34560 1.26789 0.95522 1.04606 0.91045 0.85105 0.79381 0.75919 0.79014 1.18180 1.18660 1.19149 1.19851 0.98522 0.92213 1.41124 0.90174 1.18020 0.92212 0.93023 0.89756 1.20946 0.99429 0.96602 1.00973 1.19985 1.00636 0.89127 1.01764 1.18447 0.98607 0.83667 1.08474 1.86201 1.54380 1.11780 1.70208 1.21798 0.78907 0.88171 0.75801 1.93152 1.37808 1.95741 1.88980 1.93143 1.96066 1.96630 1.31129 1.23177 0.75884 0.80447 1.01620 0.79383 1.93096 1.35023 1.95164 1.91777 1.88466 1.53859 1.14041 1.74430 1.19107 0.75083 0.78751 0.75003 1.93328 1.96038 1.95918 1.28593 1.93332 1.83767 1.47806 1.85962 1.93368 1.35622 1.95898 1.89403 1.20831 0.96435 0.98954 1.00111 1.20765 1.04021 0.92345 1.06303 0.89701 0.86181 0.85631 0.86713 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.87 10.96 21.82 0.24 -40.63 16 2 C 0.04 1.75 5.14 85.24 0.44 2.19 16 3 Si 0.99 36.41 29.59 68.60 2.03 38.44 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 5 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 6 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.49 -25.41 9.04 23.40 0.21 -25.20 16 8 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 9 C 0.07 3.82 5.57 -21.28 -0.12 3.71 16 10 C -0.16 -8.13 8.64 22.49 0.19 -7.94 16 11 C -0.10 -4.43 9.92 22.11 0.22 -4.21 16 12 C -0.05 -2.25 6.51 22.79 0.15 -2.10 16 13 O -0.31 -11.49 10.00 -89.89 -0.90 -12.39 16 14 C 0.43 13.72 1.70 71.98 0.12 13.84 16 15 F -0.18 -5.65 15.23 44.97 0.68 -4.96 16 16 F -0.19 -6.77 15.21 44.97 0.68 -6.09 16 17 C 0.26 6.09 3.64 71.98 0.26 6.35 16 18 H 0.19 2.78 7.73 -2.38 -0.02 2.77 16 19 F -0.17 -4.30 15.48 44.97 0.70 -3.61 16 20 O -0.38 -8.44 10.44 -148.98 -1.56 -10.00 16 21 C 0.61 10.99 3.75 113.37 0.43 11.41 16 22 F -0.16 -2.41 16.86 44.97 0.76 -1.65 16 23 F -0.13 -2.24 17.53 44.97 0.79 -1.45 16 24 F -0.16 -3.09 15.79 44.97 0.71 -2.38 16 25 C -0.14 -6.62 8.18 22.11 0.18 -6.44 16 26 C -0.21 -10.60 9.74 22.48 0.22 -10.38 16 27 H 0.29 13.04 8.30 -92.71 -0.77 12.27 16 28 H 0.12 6.23 6.17 -2.91 -0.02 6.21 16 29 H 0.13 5.04 8.06 -2.91 -0.02 5.02 16 30 H 0.12 4.84 5.06 -2.91 -0.01 4.82 16 31 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -57.12 301.53 7.67 -49.45 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.23 Total: 14.02 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 2.30 Total: -18.76 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.24 Total: -40.63 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -2.45 Total: -22.38 kcal Atomic # 9 Polarization: -24.45 SS G_CDS: 4.32 Total: -20.13 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Total: -57.12 7.67 -49.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098210919.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -337.805 kcal (2) G-P(sol) polarization free energy of solvation -57.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -394.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -387.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds