Wall clock time and date at job start Tue Mar 31 2020 05:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99799 * 2 1 4 4 N 1.46507 * 109.46943 * 126.42432 * 3 2 1 5 5 C 1.34884 * 120.85283 * 87.61949 * 4 3 2 6 6 N 1.32549 * 125.29757 * 1.60619 * 5 4 3 7 7 C 1.34234 * 120.00002 * 6.70860 * 6 5 4 8 8 O 1.22052 * 119.99964 * 88.62576 * 7 6 5 9 9 C 1.46437 * 120.00426 * 268.62211 * 7 6 5 10 10 H 1.07993 * 119.99588 * 357.21113 * 9 7 6 11 11 C 1.40070 * 119.99859 * 177.20783 * 9 7 6 12 12 N 1.30644 * 120.00799 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99646 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47519 * 89.99880 * 13 11 9 15 15 H 1.48511 * 109.46955 * 209.99958 * 13 11 9 16 16 H 1.48503 * 109.47242 * 329.99603 * 13 11 9 17 17 S 1.76727 * 109.40373 * 181.33756 * 5 4 3 18 18 C 1.81905 * 95.97985 * 0.41337 * 17 5 4 19 19 H 1.08996 * 110.13030 * 116.53355 * 18 17 5 20 20 C 1.54000 * 109.55800 * 237.81418 * 18 17 5 21 21 S 1.83856 * 102.63416 * 142.43983 * 20 18 17 22 22 O 1.42098 * 109.80965 * 77.04670 * 21 20 18 23 23 O 1.42106 * 109.80887 * 211.39487 * 21 20 18 24 24 C 1.83746 * 94.23307 * 324.22166 * 21 20 18 25 25 C 1.44840 * 120.84404 * 267.82687 * 4 3 2 26 26 H 1.09002 * 107.52724 * 59.09137 * 25 4 3 27 27 H 1.07995 * 119.99672 * 180.02562 * 1 2 3 28 28 H 1.07994 * 119.99772 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.00253 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47152 * 6.42118 * 3 2 1 31 31 H 1.08999 * 109.47068 * 246.41899 * 3 2 1 32 32 H 0.96999 * 120.00640 * 180.02562 * 12 11 9 33 33 H 1.08997 * 110.77664 * 260.72786 * 20 18 17 34 34 H 1.09003 * 110.77800 * 23.96441 * 20 18 17 35 35 H 1.08994 * 110.67496 * 153.07695 * 24 21 20 36 36 H 1.09004 * 110.67488 * 276.05526 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0179 1.3180 1.1114 5 6 4.2604 0.8146 0.9622 6 7 4.7502 0.3038 -0.1586 7 6 4.0428 0.3810 -1.2968 8 8 4.1606 1.3543 -2.0237 9 6 3.1297 -0.7026 -1.6663 10 1 3.0590 -1.5840 -1.0464 11 6 2.3481 -0.5957 -2.8237 12 7 2.4340 0.4704 -3.5739 13 14 1.1829 -1.9776 -3.2947 14 1 -0.1453 -1.7381 -2.6752 15 1 1.0392 -2.0221 -4.7722 16 1 1.7284 -3.2715 -2.8114 17 16 5.1360 0.9491 2.4913 18 6 3.7745 1.7160 3.4225 19 1 3.4574 1.0593 4.2325 20 6 4.2368 3.0713 3.9892 21 16 2.7334 4.1149 3.8124 22 8 1.8008 3.7929 4.8350 23 8 3.1093 5.4665 3.5859 24 6 2.2149 3.3389 2.2297 25 6 2.6499 1.8676 2.4000 26 1 1.7894 1.3055 2.7630 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5399 0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3608 2.1304 0.1149 31 1 2.6012 1.4143 -0.9418 32 1 1.8924 0.5446 -4.3752 33 1 4.5202 2.9758 5.0373 34 1 5.0621 3.4746 3.4023 35 1 1.1347 3.4087 2.1026 36 1 2.7308 3.8004 1.3876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101224902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:52 Heat of formation + Delta-G solvation = -12.317969 kcal Electronic energy + Delta-G solvation = -25014.366369 eV Core-core repulsion = 21333.957989 eV Total energy + Delta-G solvation = -3680.408380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -39.95125 -37.65239 -37.24463 -36.30979 -34.76041 -33.86662 -32.57730 -31.64028 -29.80056 -27.47533 -26.63120 -24.87431 -23.16401 -21.34558 -19.81046 -19.17090 -18.87888 -18.10777 -17.39960 -16.67668 -16.27480 -15.98213 -15.86917 -15.58039 -15.22989 -14.67502 -14.25657 -14.05224 -13.69560 -13.45044 -13.30316 -13.11622 -12.50045 -12.37765 -12.31312 -12.16941 -12.06049 -11.87897 -11.65228 -11.30485 -11.21794 -11.09729 -10.88972 -10.68811 -10.49008 -10.41477 -10.22315 -9.28270 -9.13619 -8.57176 -8.05550 -7.77350 -7.46058 -6.47428 -4.94097 -0.33392 1.20193 1.88627 2.10307 2.56164 2.81374 2.94988 3.05752 3.08165 3.19197 3.40576 3.54345 3.71384 3.89416 4.00125 4.09104 4.20532 4.48896 4.61826 4.99739 5.10659 5.20347 5.27454 5.48187 5.48398 5.63360 6.00304 6.16447 6.57198 6.61191 6.86050 7.09544 7.28898 7.30758 7.50654 7.81465 8.19381 8.66024 9.06584 10.06222 10.33277 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.004600 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.171329 B = 6084.854119 C = 6570.717130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.108 4.108 3 C 0.106 3.894 4 N -0.608 5.608 5 C 0.406 3.594 6 N -0.560 5.560 7 C 0.514 3.486 8 O -0.551 6.551 9 C -0.519 4.519 10 H 0.075 0.925 11 C 0.088 3.912 12 N -0.751 5.751 13 Si 0.895 3.105 14 H -0.262 1.262 15 H -0.276 1.276 16 H -0.261 1.261 17 S -0.041 6.041 18 C -0.089 4.089 19 H 0.144 0.856 20 C -0.564 4.564 21 S 2.388 3.612 22 O -0.924 6.924 23 O -0.928 6.928 24 C -0.594 4.594 25 C 0.150 3.850 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.130 0.870 30 H 0.068 0.932 31 H 0.157 0.843 32 H 0.275 0.725 33 H 0.150 0.850 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.987 2.912 15.009 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.128 4.128 3 C -0.016 4.016 4 N -0.332 5.332 5 C 0.022 3.978 6 N -0.301 5.301 7 C 0.321 3.679 8 O -0.437 6.437 9 C -0.554 4.554 10 H 0.093 0.907 11 C -0.134 4.134 12 N -0.380 5.380 13 Si 0.718 3.282 14 H -0.187 1.187 15 H -0.201 1.201 16 H -0.185 1.185 17 S 0.190 5.810 18 C -0.220 4.220 19 H 0.162 0.838 20 C -0.695 4.695 21 S 2.569 3.431 22 O -0.921 6.921 23 O -0.924 6.924 24 C -0.725 4.725 25 C 0.041 3.959 26 H 0.125 0.875 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.147 0.853 30 H 0.086 0.914 31 H 0.173 0.827 32 H 0.086 0.914 33 H 0.168 0.832 34 H 0.173 0.827 35 H 0.165 0.835 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.578 3.549 14.946 15.442 hybrid contribution -2.132 -1.021 -1.432 2.763 sum -3.709 2.528 13.514 14.240 Atomic orbital electron populations 1.23482 0.95786 1.00563 1.07797 1.23564 0.95278 0.99951 0.93962 1.21781 0.92239 0.95299 0.92298 1.47132 1.11700 1.63294 1.11074 1.23586 0.84964 0.92652 0.96605 1.68887 1.36059 1.25552 0.99641 1.18819 0.78188 0.87994 0.82901 1.90765 1.63586 1.34986 1.54333 1.21496 1.19857 1.04922 1.09161 0.90666 1.25741 0.96693 0.95924 0.95033 1.69937 1.31739 1.25423 1.10858 0.86527 0.81057 0.81978 0.78622 1.18697 1.20062 1.18542 1.86444 1.16055 1.76719 1.01749 1.23988 0.97121 0.99773 1.01089 0.83801 1.30712 1.20406 1.07196 1.11148 1.09337 0.78674 0.76674 0.78411 1.93651 1.59238 1.85628 1.53616 1.93644 1.82627 1.30667 1.85502 1.31050 1.12635 1.06524 1.22313 1.20883 0.97280 0.92571 0.85162 0.87478 0.89300 0.89870 0.85268 0.91388 0.82682 0.91376 0.83226 0.82723 0.83541 0.83204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -3.98 14.32 29.01 0.42 -3.56 16 2 C -0.11 -2.05 7.19 -36.03 -0.26 -2.31 16 3 C 0.11 2.07 5.28 -5.19 -0.03 2.04 16 4 N -0.61 -10.32 2.55 -168.86 -0.43 -10.75 16 5 C 0.41 7.94 8.13 -88.78 -0.72 7.21 16 6 N -0.56 -13.76 10.52 -13.39 -0.14 -13.90 16 7 C 0.51 14.10 4.39 -13.20 -0.06 14.04 16 8 O -0.55 -17.04 14.67 4.87 0.07 -16.97 16 9 C -0.52 -13.47 5.52 -35.60 -0.20 -13.67 16 10 H 0.08 1.88 6.64 -52.49 -0.35 1.54 16 11 C 0.09 2.23 4.91 -17.37 -0.09 2.15 16 12 N -0.75 -20.38 11.83 55.55 0.66 -19.72 16 13 Si 0.89 18.71 29.56 -169.99 -5.02 13.69 16 14 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 15 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 16 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 17 S -0.04 -0.57 22.42 -107.50 -2.41 -2.98 16 18 C -0.09 -0.84 3.66 -26.34 -0.10 -0.94 16 19 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 20 C -0.56 -4.01 6.93 37.68 0.26 -3.75 16 21 S 2.39 21.07 6.07 -107.50 -0.65 20.42 16 22 O -0.92 -10.27 18.16 -57.66 -1.05 -11.32 16 23 O -0.93 -11.52 18.17 -57.66 -1.05 -12.56 16 24 C -0.59 -5.77 5.93 37.87 0.22 -5.55 16 25 C 0.15 1.74 3.22 -68.23 -0.22 1.52 16 26 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.09 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.08 1.26 7.85 -52.49 -0.41 0.85 16 29 H 0.13 2.67 5.40 -52.48 -0.28 2.39 16 30 H 0.07 1.14 6.89 -51.93 -0.36 0.79 16 31 H 0.16 3.83 3.28 -52.04 -0.17 3.66 16 32 H 0.28 6.81 8.29 -40.82 -0.34 6.48 16 33 H 0.15 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.15 1.09 7.80 -51.93 -0.40 0.68 16 35 H 0.15 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.15 1.61 8.09 -51.93 -0.42 1.19 16 LS Contribution 319.60 15.07 4.82 4.82 Total: -1.00 -37.04 319.60 -9.62 -46.66 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -3.64 Total: 5.44 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.76 Total: -2.81 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.09 Total: -44.37 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -2.02 Total: -40.85 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Atomic # 16 Polarization: 20.50 SS G_CDS: -3.06 Total: 17.44 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -37.04 -9.62 -46.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101224902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.340 kcal (2) G-P(sol) polarization free energy of solvation -37.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds