Wall clock time and date at job start Tue Mar 31 2020 05:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99799 * 2 1 4 4 N 1.46507 * 109.46943 * 126.42432 * 3 2 1 5 5 C 1.34884 * 120.85283 * 87.61949 * 4 3 2 6 6 N 1.32549 * 125.29757 * 1.60619 * 5 4 3 7 7 C 1.34234 * 120.00002 * 6.70860 * 6 5 4 8 8 O 1.22052 * 119.99964 * 88.62576 * 7 6 5 9 9 C 1.46437 * 120.00426 * 268.62211 * 7 6 5 10 10 H 1.07993 * 119.99588 * 357.21113 * 9 7 6 11 11 C 1.40070 * 119.99859 * 177.20783 * 9 7 6 12 12 N 1.30644 * 120.00799 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99646 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47519 * 89.99880 * 13 11 9 15 15 H 1.48511 * 109.46955 * 209.99958 * 13 11 9 16 16 H 1.48503 * 109.47242 * 329.99603 * 13 11 9 17 17 S 1.76727 * 109.40373 * 181.33756 * 5 4 3 18 18 C 1.81905 * 95.97985 * 0.41337 * 17 5 4 19 19 H 1.08996 * 110.13030 * 116.53355 * 18 17 5 20 20 C 1.54000 * 109.55800 * 237.81418 * 18 17 5 21 21 S 1.83856 * 102.63416 * 142.43983 * 20 18 17 22 22 O 1.42098 * 109.80965 * 77.04670 * 21 20 18 23 23 O 1.42106 * 109.80887 * 211.39487 * 21 20 18 24 24 C 1.83746 * 94.23307 * 324.22166 * 21 20 18 25 25 C 1.44840 * 120.84404 * 267.82687 * 4 3 2 26 26 H 1.09002 * 107.52724 * 59.09137 * 25 4 3 27 27 H 1.07995 * 119.99672 * 180.02562 * 1 2 3 28 28 H 1.07994 * 119.99772 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.00253 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47152 * 6.42118 * 3 2 1 31 31 H 1.08999 * 109.47068 * 246.41899 * 3 2 1 32 32 H 0.96999 * 120.00640 * 180.02562 * 12 11 9 33 33 H 1.08997 * 110.77664 * 260.72786 * 20 18 17 34 34 H 1.09003 * 110.77800 * 23.96441 * 20 18 17 35 35 H 1.08994 * 110.67496 * 153.07695 * 24 21 20 36 36 H 1.09004 * 110.67488 * 276.05526 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0179 1.3180 1.1114 5 6 4.2604 0.8146 0.9622 6 7 4.7502 0.3038 -0.1586 7 6 4.0428 0.3810 -1.2968 8 8 4.1606 1.3543 -2.0237 9 6 3.1297 -0.7026 -1.6663 10 1 3.0590 -1.5840 -1.0464 11 6 2.3481 -0.5957 -2.8237 12 7 2.4340 0.4704 -3.5739 13 14 1.1829 -1.9776 -3.2947 14 1 -0.1453 -1.7381 -2.6752 15 1 1.0392 -2.0221 -4.7722 16 1 1.7284 -3.2715 -2.8114 17 16 5.1360 0.9491 2.4913 18 6 3.7745 1.7160 3.4225 19 1 3.4574 1.0593 4.2325 20 6 4.2368 3.0713 3.9892 21 16 2.7334 4.1149 3.8124 22 8 1.8008 3.7929 4.8350 23 8 3.1093 5.4665 3.5859 24 6 2.2149 3.3389 2.2297 25 6 2.6499 1.8676 2.4000 26 1 1.7894 1.3055 2.7630 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5399 0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3608 2.1304 0.1149 31 1 2.6012 1.4143 -0.9418 32 1 1.8924 0.5446 -4.3752 33 1 4.5202 2.9758 5.0373 34 1 5.0621 3.4746 3.4023 35 1 1.1347 3.4087 2.1026 36 1 2.7308 3.8004 1.3876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101224902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:52 Heat of formation + Delta-G solvation = -43.120609 kcal Electronic energy + Delta-G solvation = -25015.702072 eV Core-core repulsion = 21333.957989 eV Total energy + Delta-G solvation = -3681.744083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.35012 -39.10170 -38.19085 -37.16665 -36.10251 -35.48390 -34.42441 -32.95758 -30.75847 -29.08780 -28.11350 -26.06861 -24.46166 -22.66699 -21.24866 -20.37359 -19.98993 -19.29577 -18.85885 -17.81331 -17.34663 -17.11798 -16.93075 -16.80707 -16.56325 -16.13027 -15.56644 -15.52982 -15.17928 -14.66740 -14.42946 -14.11398 -13.75419 -13.47999 -13.38781 -13.31287 -13.21766 -13.15787 -12.92583 -12.82581 -12.68194 -12.33764 -12.24847 -12.09883 -11.91139 -11.66622 -11.36890 -11.07529 -10.98087 -10.06272 -9.71286 -9.26448 -8.95215 -8.35012 -6.92426 -1.09530 0.03431 0.75260 1.06532 1.28028 1.32978 1.34898 1.45079 1.49276 2.00867 2.13867 2.25251 2.42817 2.81186 2.82510 3.24637 3.32553 3.36897 3.77971 3.92314 4.03977 4.18267 4.35522 4.45866 4.48675 4.65342 4.71041 4.76095 5.04730 5.13921 5.21804 5.36981 5.81719 5.91270 5.91648 6.13883 6.39646 6.72304 7.35048 8.14537 8.47268 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.004600 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.171329 B = 6084.854119 C = 6570.717130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.128 4.128 3 C 0.106 3.894 4 N -0.605 5.605 5 C 0.402 3.598 6 N -0.628 5.628 7 C 0.516 3.484 8 O -0.611 6.611 9 C -0.527 4.527 10 H 0.074 0.926 11 C 0.051 3.949 12 N -0.796 5.796 13 Si 0.959 3.041 14 H -0.241 1.241 15 H -0.273 1.273 16 H -0.258 1.258 17 S -0.017 6.017 18 C -0.082 4.082 19 H 0.190 0.810 20 C -0.550 4.550 21 S 2.424 3.576 22 O -0.939 6.939 23 O -0.964 6.964 24 C -0.601 4.601 25 C 0.134 3.866 26 H 0.136 0.864 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.279 0.721 33 H 0.194 0.806 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 2.388 18.367 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.148 4.148 3 C -0.018 4.018 4 N -0.326 5.326 5 C 0.020 3.980 6 N -0.373 5.373 7 C 0.325 3.675 8 O -0.501 6.501 9 C -0.562 4.562 10 H 0.092 0.908 11 C -0.168 4.168 12 N -0.425 5.425 13 Si 0.779 3.221 14 H -0.164 1.164 15 H -0.198 1.198 16 H -0.182 1.182 17 S 0.214 5.786 18 C -0.213 4.213 19 H 0.207 0.793 20 C -0.682 4.682 21 S 2.606 3.394 22 O -0.936 6.936 23 O -0.961 6.961 24 C -0.730 4.730 25 C 0.027 3.973 26 H 0.154 0.846 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.212 0.788 34 H 0.177 0.823 35 H 0.184 0.816 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.404 3.050 18.380 18.939 hybrid contribution -1.581 -0.776 -2.241 2.851 sum -4.986 2.274 16.138 17.043 Atomic orbital electron populations 1.23722 0.94877 1.02145 1.04346 1.23289 0.95970 0.98599 0.96901 1.21477 0.92363 0.96574 0.91388 1.47285 1.10550 1.62249 1.12559 1.24417 0.86147 0.89972 0.97473 1.68668 1.37025 1.30958 1.00611 1.19035 0.77612 0.87260 0.83634 1.90679 1.66003 1.36890 1.56558 1.21629 1.20232 1.04605 1.09703 0.90786 1.26613 0.97812 0.97979 0.94357 1.70081 1.33106 1.27768 1.11544 0.85561 0.79532 0.78618 0.78392 1.16449 1.19755 1.18192 1.86345 1.17313 1.76614 0.98346 1.24428 0.94407 1.01547 1.00883 0.79271 1.30738 1.18961 1.04558 1.13923 1.08284 0.78487 0.75625 0.76973 1.93629 1.60474 1.85745 1.53800 1.93602 1.83292 1.33368 1.85806 1.31101 1.13989 1.05134 1.22796 1.21374 0.99086 0.93761 0.83087 0.84650 0.87815 0.87975 0.87573 0.89307 0.87546 0.91032 0.78830 0.82266 0.81612 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.59 14.32 67.78 0.97 -5.61 16 2 C -0.13 -4.79 7.19 25.64 0.18 -4.60 16 3 C 0.11 4.17 5.28 85.63 0.45 4.62 16 4 N -0.61 -20.22 2.55 -688.15 -1.75 -21.98 16 5 C 0.40 15.92 8.13 179.71 1.46 17.38 16 6 N -0.63 -32.50 10.52 -314.63 -3.31 -35.81 16 7 C 0.52 30.09 4.39 86.46 0.38 30.47 16 8 O -0.61 -40.63 14.67 -5.48 -0.08 -40.71 16 9 C -0.53 -28.61 5.52 24.85 0.14 -28.47 16 10 H 0.07 3.88 6.64 -2.91 -0.02 3.86 16 11 C 0.05 2.65 4.91 85.31 0.42 3.07 16 12 N -0.80 -45.21 11.83 21.84 0.26 -44.96 16 13 Si 0.96 38.56 29.56 68.60 2.03 40.59 16 14 H -0.24 -8.77 7.11 99.48 0.71 -8.06 16 15 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 16 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 17 S -0.02 -0.45 22.42 -56.49 -1.27 -1.71 16 18 C -0.08 -1.20 3.66 30.85 0.11 -1.08 16 19 H 0.19 1.24 8.14 -2.39 -0.02 1.22 16 20 C -0.55 -5.25 6.93 72.32 0.50 -4.75 16 21 S 2.42 35.01 6.07 -56.49 -0.34 34.67 16 22 O -0.94 -17.23 18.16 -127.53 -2.32 -19.55 16 23 O -0.96 -22.07 18.17 -127.53 -2.32 -24.38 16 24 C -0.60 -10.31 5.93 72.45 0.43 -9.88 16 25 C 0.13 2.71 3.22 45.68 0.15 2.86 16 26 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.10 2.91 8.06 -2.91 -0.02 2.88 16 28 H 0.10 2.77 7.85 -2.91 -0.02 2.74 16 29 H 0.11 4.46 5.40 -2.91 -0.02 4.44 16 30 H 0.09 2.97 6.89 -2.39 -0.02 2.95 16 31 H 0.11 5.55 3.28 -2.49 -0.01 5.54 16 32 H 0.28 14.42 8.29 -92.71 -0.77 13.65 16 33 H 0.19 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.16 1.61 7.80 -2.39 -0.02 1.60 16 35 H 0.17 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.13 2.83 8.09 -2.38 -0.02 2.81 16 Total: -1.00 -88.45 319.60 -2.78 -91.22 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 1.13 Total: 18.63 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 5.19 Total: 4.00 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -4.81 Total: -102.75 kcal Atomic # 8 Polarization: -79.93 SS G_CDS: -4.71 Total: -84.64 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Atomic # 16 Polarization: 34.56 SS G_CDS: -1.61 Total: 32.95 kcal Total: -88.45 -2.78 -91.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101224902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.104 kcal (2) G-P(sol) polarization free energy of solvation -88.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds