Wall clock time and date at job start Tue Mar 31 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00287 * 2 1 4 4 N 1.46494 * 109.47107 * 121.49731 * 3 2 1 5 5 C 1.38437 * 123.38455 * 83.33850 * 4 3 2 6 6 N 1.32551 * 126.10673 * 8.12875 * 5 4 3 7 7 C 1.34239 * 119.99830 * 6.43918 * 6 5 4 8 8 O 1.22041 * 119.99698 * 267.48551 * 7 6 5 9 9 C 1.46432 * 120.00540 * 87.49192 * 7 6 5 10 10 H 1.08005 * 119.99349 * 4.37708 * 9 7 6 11 11 C 1.40069 * 120.00386 * 184.38123 * 9 7 6 12 12 N 1.30641 * 119.99934 * 5.63278 * 11 9 7 13 13 Si 1.86798 * 120.00281 * 185.63261 * 11 9 7 14 14 H 1.48510 * 109.47000 * 59.99899 * 13 11 9 15 15 H 1.48498 * 109.47482 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47316 * 300.00376 * 13 11 9 17 17 S 1.78737 * 107.78313 * 188.11401 * 5 4 3 18 18 C 1.82203 * 92.45262 * 20.61798 * 17 5 4 19 19 H 1.08994 * 114.24131 * 82.00958 * 18 17 5 20 20 C 1.53755 * 114.69994 * 215.30439 * 18 17 5 21 21 S 1.84514 * 100.54777 * 152.24164 * 20 18 17 22 22 O 1.42112 * 109.41123 * 87.68472 * 21 20 18 23 23 O 1.42097 * 109.41508 * 220.91393 * 21 20 18 24 24 C 1.85381 * 96.63590 * 334.85139 * 21 20 18 25 25 C 1.43040 * 123.39074 * 263.36076 * 4 3 2 26 26 H 1.09002 * 106.63416 * 252.89497 * 25 4 3 27 27 H 1.07995 * 120.00105 * 354.99241 * 1 2 3 28 28 H 1.08005 * 120.00288 * 174.98998 * 1 2 3 29 29 H 1.08005 * 119.99593 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47034 * 1.50119 * 3 2 1 31 31 H 1.09000 * 109.47149 * 241.50399 * 3 2 1 32 32 H 0.96998 * 120.00420 * 179.97438 * 12 11 9 33 33 H 1.08994 * 111.19727 * 270.06543 * 20 18 17 34 34 H 1.08997 * 111.20081 * 34.42093 * 20 18 17 35 35 H 1.09005 * 110.31473 * 234.49357 * 24 21 20 36 36 H 1.09000 * 111.72691 * 110.73769 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9326 1.3671 1.1777 5 6 4.1894 0.7887 1.2283 6 7 4.8406 0.2450 0.2098 7 6 4.3406 0.3371 -1.0326 8 8 3.6225 -0.5483 -1.4684 9 6 4.6567 1.4996 -1.8649 10 1 5.3481 2.2481 -1.5068 11 6 4.0625 1.6410 -3.1254 12 7 3.1446 0.7962 -3.5132 13 14 4.5824 3.0375 -4.2518 14 1 6.0324 2.9192 -4.5500 15 1 3.8089 2.9668 -5.5174 16 1 4.3190 4.3371 -3.5832 17 16 4.7770 0.9063 2.9122 18 6 3.0914 1.1273 3.5677 19 1 2.5372 0.1982 3.6999 20 6 2.9905 2.0742 4.7749 21 16 1.2648 2.6954 4.5737 22 8 0.3657 1.8138 5.2324 23 8 1.2277 4.0874 4.8570 24 6 1.1492 2.4180 2.7444 25 6 2.5680 2.0310 2.3910 26 1 3.1614 2.9441 2.4376 27 1 -0.5400 0.9317 0.0816 28 1 -0.5401 -0.9318 -0.0817 29 1 1.8500 -0.9354 -0.0004 30 1 1.3556 2.1334 0.0269 31 1 2.6698 1.3745 -0.9032 32 1 2.7327 0.8943 -4.3860 33 1 3.1071 1.5311 5.7126 34 1 3.7131 2.8868 4.6999 35 1 0.8628 3.3404 2.2391 36 1 0.4568 1.6120 2.5015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101224905.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:57 Heat of formation + Delta-G solvation = -18.251603 kcal Electronic energy + Delta-G solvation = -24767.126567 eV Core-core repulsion = 21086.460885 eV Total energy + Delta-G solvation = -3680.665682 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.70283 -37.48610 -37.38260 -36.37341 -34.83116 -33.72486 -32.79985 -31.52890 -29.99420 -27.46892 -26.44118 -24.04326 -23.29778 -21.27837 -19.81310 -19.12558 -19.10352 -17.83327 -17.67464 -16.90246 -16.18965 -16.06891 -15.71408 -15.39886 -15.05441 -14.71854 -14.33223 -14.13756 -13.81051 -13.47599 -13.14938 -13.01181 -12.56974 -12.45583 -12.36750 -12.28281 -11.94863 -11.78896 -11.56006 -11.25681 -11.16241 -11.04195 -10.95719 -10.76995 -10.64508 -10.52085 -10.22590 -9.37699 -9.05553 -8.88467 -8.03131 -7.77363 -7.50004 -6.48849 -4.99983 -0.47083 1.24773 1.75907 2.10447 2.48226 2.71071 2.97259 3.05626 3.08647 3.17081 3.34383 3.60617 3.74229 3.90942 3.96642 4.05905 4.16788 4.45680 4.54046 5.00786 5.10798 5.15910 5.28479 5.35351 5.43994 5.53198 5.84895 6.16678 6.43782 6.57846 6.96219 7.12080 7.14220 7.15665 7.41122 7.84591 8.18635 8.67392 9.04353 10.07764 10.33008 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.004424 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.770728 B = 6326.953867 C = 6567.525313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.120 4.120 3 C 0.122 3.878 4 N -0.612 5.612 5 C 0.409 3.591 6 N -0.535 5.535 7 C 0.508 3.492 8 O -0.542 6.542 9 C -0.531 4.531 10 H 0.073 0.927 11 C 0.084 3.916 12 N -0.752 5.752 13 Si 0.908 3.092 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.266 1.266 17 S -0.048 6.048 18 C -0.121 4.121 19 H 0.141 0.859 20 C -0.549 4.549 21 S 2.379 3.621 22 O -0.923 6.923 23 O -0.923 6.923 24 C -0.568 4.568 25 C 0.143 3.857 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.151 0.849 32 H 0.276 0.724 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 5.719 13.722 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.140 4.140 3 C 0.000 4.000 4 N -0.337 5.337 5 C 0.025 3.975 6 N -0.273 5.273 7 C 0.313 3.687 8 O -0.425 6.425 9 C -0.567 4.567 10 H 0.091 0.909 11 C -0.138 4.138 12 N -0.380 5.380 13 Si 0.732 3.268 14 H -0.188 1.188 15 H -0.202 1.202 16 H -0.190 1.190 17 S 0.182 5.818 18 C -0.253 4.253 19 H 0.159 0.841 20 C -0.679 4.679 21 S 2.560 3.440 22 O -0.920 6.920 23 O -0.920 6.920 24 C -0.698 4.698 25 C 0.033 3.967 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.133 0.867 30 H 0.089 0.911 31 H 0.168 0.832 32 H 0.087 0.913 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.166 0.834 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.707 5.040 14.188 15.507 hybrid contribution -0.830 0.532 -2.053 2.277 sum -4.536 5.573 12.135 14.103 Atomic orbital electron populations 1.23608 0.95701 1.00974 1.05315 1.23388 0.95616 0.99884 0.95104 1.21460 0.93919 0.94590 0.90020 1.47061 1.15546 1.58550 1.12551 1.24586 0.84254 0.92408 0.96260 1.68926 1.33747 1.22354 1.02277 1.18956 0.79259 0.87341 0.83190 1.90752 1.36241 1.40456 1.75068 1.21451 1.27650 1.05758 1.01823 0.90858 1.25826 0.93495 0.96731 0.97742 1.69928 1.17708 1.31436 1.18945 0.86394 0.79965 0.81242 0.79203 1.18846 1.20190 1.19020 1.86885 1.05510 1.92635 0.96776 1.25616 1.00691 1.02739 0.96239 0.84117 1.30442 1.23703 1.09292 1.04510 1.09954 0.79009 0.75940 0.79121 1.93646 1.60191 1.66793 1.71341 1.93645 1.86084 1.29882 1.82429 1.30360 1.02916 1.12331 1.24168 1.21145 0.94170 0.95901 0.85513 0.89530 0.89444 0.88920 0.86656 0.91056 0.83161 0.91296 0.83238 0.82843 0.83351 0.83245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.50 14.32 29.01 0.42 -3.09 16 2 C -0.12 -2.33 8.70 -36.03 -0.31 -2.64 16 3 C 0.12 2.37 5.39 -5.20 -0.03 2.34 16 4 N -0.61 -10.52 2.82 -167.33 -0.47 -10.99 16 5 C 0.41 8.06 8.17 -85.46 -0.70 7.36 16 6 N -0.54 -13.15 10.52 -11.96 -0.13 -13.28 16 7 C 0.51 13.91 4.43 -13.20 -0.06 13.85 16 8 O -0.54 -16.21 13.05 4.88 0.06 -16.14 16 9 C -0.53 -14.24 8.48 -35.60 -0.30 -14.54 16 10 H 0.07 1.90 7.85 -52.48 -0.41 1.49 16 11 C 0.08 2.15 5.22 -17.37 -0.09 2.06 16 12 N -0.75 -20.22 11.79 55.55 0.66 -19.56 16 13 Si 0.91 18.84 29.56 -169.99 -5.03 13.82 16 14 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 15 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 16 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 17 S -0.05 -0.69 22.64 -107.50 -2.43 -3.12 16 18 C -0.12 -1.24 3.90 -23.98 -0.09 -1.33 16 19 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 20 C -0.55 -3.67 6.75 37.55 0.25 -3.42 16 21 S 2.38 19.48 6.14 -107.50 -0.66 18.82 16 22 O -0.92 -10.44 18.15 -57.72 -1.05 -11.49 16 23 O -0.92 -10.23 18.17 -57.72 -1.05 -11.28 16 24 C -0.57 -4.94 6.55 36.27 0.24 -4.70 16 25 C 0.14 1.70 2.52 -68.28 -0.17 1.53 16 26 H 0.09 0.90 7.66 -51.93 -0.40 0.50 16 27 H 0.09 1.21 7.84 -52.49 -0.41 0.79 16 28 H 0.09 1.39 8.06 -52.48 -0.42 0.97 16 29 H 0.12 2.62 7.03 -52.48 -0.37 2.25 16 30 H 0.07 1.17 7.36 -51.93 -0.38 0.78 16 31 H 0.15 3.61 3.41 -51.93 -0.18 3.43 16 32 H 0.28 6.78 8.29 -40.82 -0.34 6.44 16 33 H 0.15 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.15 0.81 8.11 -51.93 -0.42 0.39 16 35 H 0.15 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.15 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 326.77 15.07 4.92 4.92 Total: -1.00 -36.57 326.77 -9.84 -46.41 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -3.82 Total: 4.48 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.85 Total: -2.58 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.06 Total: -43.82 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -2.03 Total: -38.91 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.82 kcal Atomic # 16 Polarization: 18.79 SS G_CDS: -3.09 Total: 15.70 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.57 -9.84 -46.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101224905.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.154 kcal (2) G-P(sol) polarization free energy of solvation -36.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds