Wall clock time and date at job start Tue Mar 31 2020 05:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 120.00461 * 2 1 4 4 N 1.46500 * 109.47232 * 124.27169 * 3 2 1 5 5 C 1.38506 * 123.07349 * 89.25269 * 4 3 2 6 6 N 1.32553 * 126.09037 * 355.63584 * 5 4 3 7 7 C 1.34241 * 119.99576 * 6.73481 * 6 5 4 8 8 O 1.22043 * 120.00167 * 269.30488 * 7 6 5 9 9 C 1.46440 * 119.99918 * 89.31325 * 7 6 5 10 10 H 1.07995 * 119.99908 * 359.97438 * 9 7 6 11 11 C 1.40077 * 120.00025 * 180.02562 * 9 7 6 12 12 N 1.30641 * 119.99744 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 119.99961 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46883 * 59.99330 * 13 11 9 15 15 H 1.48499 * 109.46739 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46761 * 299.99565 * 13 11 9 17 17 S 1.81071 * 107.88028 * 175.57975 * 5 4 3 18 18 C 1.82383 * 92.24376 * 339.50841 * 17 5 4 19 19 H 1.09002 * 112.79239 * 275.70722 * 18 17 5 20 20 C 1.52905 * 114.10916 * 145.57886 * 18 17 5 21 21 S 1.83848 * 104.28215 * 221.12266 * 20 18 17 22 22 O 1.42101 * 109.37325 * 119.70541 * 21 20 18 23 23 O 1.42097 * 109.37637 * 252.83095 * 21 20 18 24 24 C 1.84574 * 96.88640 * 6.33652 * 21 20 18 25 25 C 1.40960 * 123.07055 * 269.27631 * 4 3 2 26 26 H 1.08997 * 102.73937 * 107.37520 * 25 4 3 27 27 H 1.08001 * 119.99451 * 5.00789 * 1 2 3 28 28 H 1.07993 * 120.00328 * 185.01182 * 1 2 3 29 29 H 1.08008 * 120.00028 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47283 * 4.27257 * 3 2 1 31 31 H 1.09000 * 109.47557 * 244.26814 * 3 2 1 32 32 H 0.97001 * 120.00196 * 179.97438 * 12 11 9 33 33 H 1.09003 * 110.46927 * 339.82150 * 20 18 17 34 34 H 1.09001 * 110.47139 * 102.29375 * 20 18 17 35 35 H 1.09007 * 111.17148 * 140.61414 * 24 21 20 36 36 H 1.08994 * 111.16906 * 264.85433 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9813 1.3390 1.1414 5 6 4.2807 0.8631 1.0809 6 7 4.8413 0.2526 0.0465 7 6 4.1825 0.1671 -1.1200 8 8 3.4652 -0.7938 -1.3468 9 6 4.3248 1.2269 -2.1206 10 1 4.9593 2.0774 -1.9198 11 6 3.6370 1.1380 -3.3376 12 7 2.8690 0.1094 -3.5802 13 14 3.8180 2.4902 -4.6137 14 1 5.2432 2.6050 -5.0144 15 1 2.9943 2.1604 -5.8044 16 1 3.3606 3.7797 -4.0365 17 16 5.0793 1.2243 2.6654 18 6 3.8666 2.5278 3.0611 19 1 4.1216 3.4904 2.6179 20 6 3.5298 2.6368 4.5486 21 16 1.7118 2.9082 4.5834 22 8 1.0910 1.8509 5.3016 23 8 1.4433 4.2579 4.9374 24 6 1.4187 2.6754 2.7760 25 6 2.6225 1.8585 2.4017 26 1 2.5287 0.9614 3.0136 27 1 -0.5399 0.9318 -0.0817 28 1 -0.5400 -0.9316 0.0817 29 1 1.8500 -0.9354 -0.0004 30 1 1.3578 2.1322 0.0766 31 1 2.6316 1.3966 -0.9257 32 1 2.3924 0.0479 -4.4229 33 1 3.7873 1.7128 5.0665 34 1 4.0520 3.4821 4.9968 35 1 0.4964 2.1235 2.5946 36 1 1.4121 3.6312 2.2520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101224906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:00 Heat of formation + Delta-G solvation = -13.714186 kcal Electronic energy + Delta-G solvation = -24753.467776 eV Core-core repulsion = 21072.998852 eV Total energy + Delta-G solvation = -3680.468925 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.87727 -37.58563 -37.38451 -36.39712 -34.89140 -33.68579 -32.81630 -31.58767 -30.15781 -27.56702 -26.45385 -24.12116 -23.32469 -21.30242 -19.86340 -19.14401 -18.97132 -17.89308 -17.65362 -16.97895 -16.26066 -15.95581 -15.73480 -15.43496 -15.08082 -14.80381 -14.37361 -14.11000 -13.72636 -13.58550 -13.27843 -12.86929 -12.59468 -12.56127 -12.39099 -12.22959 -11.88281 -11.73404 -11.52088 -11.32357 -11.17322 -11.10850 -10.99073 -10.71289 -10.62624 -10.46792 -10.29205 -9.39971 -9.07459 -8.76849 -8.08423 -7.76137 -7.49908 -6.48200 -5.01944 -0.47303 1.20770 1.67843 2.08839 2.49807 2.74416 2.95231 3.03927 3.06167 3.15464 3.32468 3.61656 3.75783 3.88933 3.95810 4.05545 4.18781 4.43903 4.54270 5.02120 5.08047 5.10749 5.25591 5.34290 5.45068 5.55996 5.95808 6.16559 6.50967 6.54239 6.97565 7.10489 7.17340 7.29480 7.46867 7.81245 8.17531 8.64269 9.01737 10.07020 10.32369 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.017340 B = 0.004425 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.403176 B = 6326.845289 C = 6649.996868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.119 4.119 3 C 0.113 3.887 4 N -0.601 5.601 5 C 0.418 3.582 6 N -0.534 5.534 7 C 0.506 3.494 8 O -0.538 6.538 9 C -0.528 4.528 10 H 0.074 0.926 11 C 0.082 3.918 12 N -0.746 5.746 13 Si 0.908 3.092 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.265 1.265 17 S -0.070 6.070 18 C -0.101 4.101 19 H 0.137 0.863 20 C -0.562 4.562 21 S 2.394 3.606 22 O -0.919 6.919 23 O -0.925 6.925 24 C -0.563 4.563 25 C 0.140 3.860 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.127 0.873 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.276 0.724 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 8.698 12.849 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.138 4.138 3 C -0.009 4.009 4 N -0.325 5.325 5 C 0.035 3.965 6 N -0.272 5.272 7 C 0.311 3.689 8 O -0.421 6.421 9 C -0.564 4.564 10 H 0.092 0.908 11 C -0.140 4.140 12 N -0.373 5.373 13 Si 0.732 3.268 14 H -0.188 1.188 15 H -0.201 1.201 16 H -0.190 1.190 17 S 0.161 5.839 18 C -0.233 4.233 19 H 0.155 0.845 20 C -0.692 4.692 21 S 2.574 3.426 22 O -0.916 6.916 23 O -0.922 6.922 24 C -0.693 4.693 25 C 0.028 3.972 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.145 0.855 30 H 0.088 0.912 31 H 0.166 0.834 32 H 0.087 0.913 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.251 7.318 13.601 15.608 hybrid contribution -0.825 1.112 -2.232 2.627 sum -3.077 8.430 11.369 14.484 Atomic orbital electron populations 1.23545 0.95731 1.00823 1.05895 1.23485 0.95607 1.00068 0.94654 1.21502 0.92960 0.95124 0.91324 1.46354 1.11143 1.64268 1.10765 1.24934 0.82588 0.93690 0.95326 1.68973 1.36488 1.20388 1.01367 1.19021 0.78525 0.87416 0.83965 1.90719 1.36774 1.33394 1.81176 1.21409 1.28751 1.05323 1.00922 0.90780 1.25842 0.93624 0.96232 0.98333 1.69964 1.18817 1.25772 1.22767 0.86386 0.79551 0.81146 0.79716 1.18829 1.20124 1.18991 1.87317 1.38541 1.41567 1.16512 1.24923 0.98696 1.03862 0.95780 0.84533 1.30349 1.24883 1.13667 1.00261 1.09401 0.79133 0.75589 0.78462 1.93663 1.72887 1.56755 1.68339 1.93638 1.83042 1.34388 1.81085 1.30043 1.05013 1.09759 1.24468 1.19830 0.91020 0.97030 0.89328 0.92470 0.89656 0.89054 0.85525 0.91159 0.83433 0.91315 0.82975 0.82966 0.83014 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.79 14.31 29.02 0.42 -3.38 16 2 C -0.12 -2.41 8.51 -36.03 -0.31 -2.72 16 3 C 0.11 2.19 5.51 -5.20 -0.03 2.17 16 4 N -0.60 -10.48 2.81 -169.40 -0.48 -10.95 16 5 C 0.42 8.33 8.33 -85.39 -0.71 7.62 16 6 N -0.53 -13.15 10.52 -11.30 -0.12 -13.27 16 7 C 0.51 13.80 4.46 -13.20 -0.06 13.74 16 8 O -0.54 -16.04 12.52 4.88 0.06 -15.98 16 9 C -0.53 -13.97 7.90 -35.59 -0.28 -14.25 16 10 H 0.07 1.88 7.85 -52.49 -0.41 1.47 16 11 C 0.08 2.09 5.36 -17.37 -0.09 2.00 16 12 N -0.75 -20.08 11.82 55.55 0.66 -19.42 16 13 Si 0.91 18.58 29.56 -169.99 -5.02 13.55 16 14 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 15 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 16 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 17 S -0.07 -1.01 22.59 -107.50 -2.43 -3.44 16 18 C -0.10 -1.02 3.87 -25.23 -0.10 -1.12 16 19 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 20 C -0.56 -3.84 6.75 37.11 0.25 -3.59 16 21 S 2.39 19.84 5.98 -107.50 -0.64 19.20 16 22 O -0.92 -10.79 18.15 -57.72 -1.05 -11.84 16 23 O -0.92 -9.98 18.15 -57.72 -1.05 -11.02 16 24 C -0.56 -4.87 6.69 35.77 0.24 -4.63 16 25 C 0.14 1.73 2.61 -70.64 -0.18 1.55 16 26 H 0.06 0.70 7.10 -51.93 -0.37 0.33 16 27 H 0.09 1.26 7.85 -52.49 -0.41 0.85 16 28 H 0.09 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.13 3.05 6.30 -52.48 -0.33 2.72 16 30 H 0.07 1.13 7.37 -51.93 -0.38 0.75 16 31 H 0.15 3.47 3.52 -51.93 -0.18 3.29 16 32 H 0.28 6.78 8.29 -40.82 -0.34 6.44 16 33 H 0.15 0.94 7.95 -51.93 -0.41 0.53 16 34 H 0.15 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.15 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.15 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 324.57 15.07 4.89 4.89 Total: -1.00 -36.34 324.57 -9.78 -46.13 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -3.75 Total: 4.78 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -0.86 Total: -2.62 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.06 Total: -43.65 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -2.03 Total: -38.84 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.55 kcal Atomic # 16 Polarization: 18.83 SS G_CDS: -3.07 Total: 15.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -36.34 -9.78 -46.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101224906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.414 kcal (2) G-P(sol) polarization free energy of solvation -36.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds