Wall clock time and date at job start Tue Mar 31 2020 05:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 119.99912 * 2 1 4 4 N 1.46488 * 109.47244 * 233.32029 * 3 2 1 5 5 C 1.34888 * 120.85276 * 265.86470 * 4 3 2 6 6 N 1.32553 * 125.29213 * 358.42366 * 5 4 3 7 7 C 1.34239 * 120.00126 * 8.60065 * 6 5 4 8 8 O 1.22039 * 119.99840 * 260.87076 * 7 6 5 9 9 C 1.46440 * 119.99754 * 80.87432 * 7 6 5 10 10 H 1.07995 * 120.00291 * 4.41323 * 9 7 6 11 11 C 1.40076 * 119.99389 * 184.41549 * 9 7 6 12 12 N 1.30643 * 120.00457 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99656 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46911 * 90.00573 * 13 11 9 15 15 H 1.48498 * 109.47201 * 210.00428 * 13 11 9 16 16 H 1.48500 * 109.47475 * 330.00406 * 13 11 9 17 17 S 1.76743 * 109.40398 * 178.32274 * 5 4 3 18 18 C 1.81911 * 95.97704 * 0.13709 * 17 5 4 19 19 H 1.08993 * 110.13144 * 243.19384 * 18 17 5 20 20 C 1.54001 * 109.46410 * 121.96733 * 18 17 5 21 21 S 1.83857 * 102.63210 * 217.61269 * 20 18 17 22 22 O 1.42102 * 109.80966 * 148.61332 * 21 20 18 23 23 O 1.42102 * 109.81132 * 282.95539 * 21 20 18 24 24 C 1.83630 * 94.27348 * 35.71084 * 21 20 18 25 25 C 1.44853 * 120.86016 * 86.14655 * 4 3 2 26 26 H 1.09011 * 107.79985 * 301.30170 * 25 4 3 27 27 H 1.08004 * 119.99566 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00577 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00083 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46526 * 353.32041 * 3 2 1 31 31 H 1.08993 * 109.47025 * 113.31262 * 3 2 1 32 32 H 0.97000 * 120.00353 * 179.97438 * 12 11 9 33 33 H 1.09002 * 110.78018 * 335.89482 * 20 18 17 34 34 H 1.08998 * 110.77639 * 99.32290 * 20 18 17 35 35 H 1.08997 * 110.78219 * 206.97188 * 24 21 20 36 36 H 1.09005 * 110.52224 * 83.85073 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0221 1.3156 -1.1076 5 6 4.3019 0.9339 -0.9184 6 7 4.8245 0.5534 0.2388 7 6 4.0297 0.3611 1.3034 8 8 3.9256 1.2316 2.1523 9 6 3.2876 -0.8933 1.4459 10 1 3.4339 -1.6913 0.7331 11 6 2.3879 -1.0579 2.5068 12 7 2.2104 -0.0923 3.3688 13 14 1.4407 -2.6577 2.6883 14 1 2.2198 -3.6015 3.5294 15 1 0.1302 -2.3868 3.3322 16 1 1.2190 -3.2566 1.3476 17 16 5.1727 1.0172 -2.4542 18 6 3.7611 1.6031 -3.4408 19 1 3.5026 0.8656 -4.2005 20 6 4.1211 2.9449 -4.1052 21 16 2.5406 3.8792 -4.0068 22 8 2.8097 5.2687 -3.8801 23 8 1.6421 3.4119 -5.0036 24 6 2.0716 3.1829 -2.3736 25 6 2.6217 1.7418 -2.4328 26 1 1.8063 1.0957 -2.7585 27 1 -0.5399 -0.9354 -0.0004 28 1 -0.5401 0.9352 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3611 2.1301 -0.1195 31 1 2.5973 1.4165 0.9437 32 1 1.5871 -0.2062 4.1032 33 1 4.9067 3.4544 -3.5471 34 1 4.4178 2.7951 -5.1433 35 1 0.9884 3.1767 -2.2525 36 1 2.5468 3.7434 -1.5685 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101224909.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:04 Heat of formation + Delta-G solvation = -10.706208 kcal Electronic energy + Delta-G solvation = -25042.243062 eV Core-core repulsion = 21361.904573 eV Total energy + Delta-G solvation = -3680.338489 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -39.93720 -37.65485 -37.24829 -36.31534 -34.73270 -33.89548 -32.61695 -31.61033 -29.81624 -27.37226 -26.67403 -24.90777 -23.14855 -21.33898 -19.72295 -19.16303 -18.84509 -18.11867 -17.44058 -16.69336 -16.26792 -15.99182 -15.86037 -15.61284 -15.24341 -14.64047 -14.28460 -14.04122 -13.70818 -13.43915 -13.27427 -13.18609 -12.50351 -12.39656 -12.33085 -12.14947 -12.00117 -11.89400 -11.60927 -11.30212 -11.21579 -11.12809 -10.90321 -10.62115 -10.46177 -10.41289 -10.31713 -9.28869 -9.22173 -8.46560 -8.05092 -7.76576 -7.45238 -6.49451 -4.95516 -0.33851 1.20074 1.89062 2.10012 2.55363 2.82231 2.93393 3.03810 3.04647 3.18910 3.42868 3.53903 3.71978 3.87961 3.98313 4.09059 4.21043 4.49275 4.61851 5.00240 5.07642 5.21026 5.26728 5.47276 5.53875 5.64646 6.05742 6.18848 6.60583 6.63382 6.88463 7.09017 7.30696 7.37201 7.54084 7.79097 8.14197 8.63096 9.12679 10.04448 10.31308 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.019997 B = 0.004637 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.853074 B = 6036.868157 C = 6546.225657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.114 4.114 3 C 0.099 3.901 4 N -0.606 5.606 5 C 0.407 3.593 6 N -0.563 5.563 7 C 0.515 3.485 8 O -0.552 6.552 9 C -0.520 4.520 10 H 0.075 0.925 11 C 0.090 3.910 12 N -0.746 5.746 13 Si 0.897 3.103 14 H -0.268 1.268 15 H -0.273 1.273 16 H -0.260 1.260 17 S -0.040 6.040 18 C -0.089 4.089 19 H 0.145 0.855 20 C -0.564 4.564 21 S 2.388 3.612 22 O -0.928 6.928 23 O -0.924 6.924 24 C -0.595 4.595 25 C 0.150 3.850 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.065 0.935 31 H 0.160 0.840 32 H 0.276 0.724 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.399 3.012 -15.115 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.133 4.133 3 C -0.023 4.023 4 N -0.330 5.330 5 C 0.023 3.977 6 N -0.304 5.304 7 C 0.323 3.677 8 O -0.438 6.438 9 C -0.555 4.555 10 H 0.093 0.907 11 C -0.133 4.133 12 N -0.374 5.374 13 Si 0.720 3.280 14 H -0.193 1.193 15 H -0.198 1.198 16 H -0.184 1.184 17 S 0.191 5.809 18 C -0.220 4.220 19 H 0.163 0.837 20 C -0.695 4.695 21 S 2.569 3.431 22 O -0.925 6.925 23 O -0.921 6.921 24 C -0.726 4.726 25 C 0.041 3.959 26 H 0.125 0.875 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.156 0.844 30 H 0.084 0.916 31 H 0.176 0.824 32 H 0.087 0.913 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.165 0.835 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.121 3.759 -14.961 15.467 hybrid contribution -2.038 -1.203 1.253 2.678 sum -3.158 2.556 -13.708 14.297 Atomic orbital electron populations 1.23501 0.95894 1.00436 1.07890 1.23850 0.95377 1.00467 0.93634 1.21874 0.92363 0.95249 0.92818 1.47083 1.08684 1.68724 1.08470 1.23558 0.83248 0.94821 0.96065 1.68847 1.35518 1.26423 0.99649 1.18853 0.76477 0.89216 0.83185 1.90717 1.61696 1.46887 1.44509 1.21449 1.21050 1.01268 1.11724 0.90713 1.25761 0.96121 0.97126 0.94299 1.69922 1.27018 1.30840 1.09585 0.86512 0.79348 0.82329 0.79800 1.19292 1.19833 1.18393 1.86439 1.12973 1.83780 0.97716 1.23992 0.97077 1.00489 1.00418 0.83722 1.30718 1.21802 1.06577 1.10361 1.09330 0.78867 0.76386 0.78488 1.93641 1.84440 1.28102 1.86327 1.93651 1.60792 1.82739 1.54943 1.31041 1.11914 1.06565 1.23035 1.20856 0.96346 0.94044 0.84678 0.87536 0.89393 0.89972 0.84360 0.91634 0.82357 0.91322 0.82765 0.83202 0.83500 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.07 14.32 29.02 0.42 -3.66 16 2 C -0.11 -2.21 7.03 -36.02 -0.25 -2.46 16 3 C 0.10 1.95 5.29 -5.20 -0.03 1.92 16 4 N -0.61 -10.32 2.55 -168.85 -0.43 -10.75 16 5 C 0.41 7.94 8.14 -88.78 -0.72 7.22 16 6 N -0.56 -13.83 10.52 -13.34 -0.14 -13.97 16 7 C 0.52 14.11 4.35 -13.20 -0.06 14.05 16 8 O -0.55 -17.00 14.31 4.88 0.07 -16.93 16 9 C -0.52 -13.46 5.74 -35.59 -0.20 -13.67 16 10 H 0.07 1.87 7.37 -52.49 -0.39 1.49 16 11 C 0.09 2.25 4.30 -17.37 -0.07 2.18 16 12 N -0.75 -20.04 11.83 55.55 0.66 -19.38 16 13 Si 0.90 18.64 29.29 -169.99 -4.98 13.66 16 14 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 15 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 16 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 17 S -0.04 -0.56 22.41 -107.50 -2.41 -2.97 16 18 C -0.09 -0.84 3.67 -26.33 -0.10 -0.94 16 19 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.56 -3.93 6.93 37.68 0.26 -3.67 16 21 S 2.39 20.79 6.07 -107.50 -0.65 20.13 16 22 O -0.93 -11.33 18.17 -57.67 -1.05 -12.38 16 23 O -0.92 -10.27 18.16 -57.67 -1.05 -11.32 16 24 C -0.59 -5.69 5.94 37.87 0.23 -5.47 16 25 C 0.15 1.75 3.22 -68.22 -0.22 1.53 16 26 H 0.11 1.09 8.14 -51.92 -0.42 0.66 16 27 H 0.09 1.41 8.06 -52.48 -0.42 0.98 16 28 H 0.08 1.27 7.85 -52.49 -0.41 0.86 16 29 H 0.14 2.94 4.98 -52.49 -0.26 2.68 16 30 H 0.07 1.12 6.91 -51.93 -0.36 0.76 16 31 H 0.16 3.95 3.29 -51.98 -0.17 3.78 16 32 H 0.28 6.77 8.29 -40.82 -0.34 6.43 16 33 H 0.15 1.04 7.80 -51.93 -0.40 0.64 16 34 H 0.15 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.15 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.15 1.52 8.09 -51.93 -0.42 1.10 16 LS Contribution 318.76 15.07 4.80 4.80 Total: -1.00 -36.74 318.76 -9.59 -46.33 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.66 Total: 5.74 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -0.75 Total: -2.96 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.09 Total: -44.10 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -2.03 Total: -40.63 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.98 Total: 13.66 kcal Atomic # 16 Polarization: 20.23 SS G_CDS: -3.06 Total: 17.16 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.74 -9.59 -46.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101224909.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.623 kcal (2) G-P(sol) polarization free energy of solvation -36.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds