Wall clock time and date at job start Tue Mar 31 2020 05:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 110.99903 * 2 1 4 4 C 1.53000 * 109.47096 * 66.04403 * 3 2 1 5 5 H 1.09002 * 109.47198 * 304.99809 * 4 3 2 6 6 C 1.47203 * 109.47077 * 65.00177 * 4 3 2 7 7 N 3.66506 * 112.02448 * 75.45553 * 2 1 3 8 8 C 1.53002 * 109.46998 * 184.99840 * 4 3 2 9 9 C 1.50703 * 109.47060 * 174.99625 * 8 4 3 10 10 H 1.07996 * 120.00174 * 0.02562 * 9 8 4 11 11 C 1.37875 * 119.99997 * 179.97438 * 9 8 4 12 12 N 1.31513 * 120.00399 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99889 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47369 * 89.99835 * 13 11 9 15 15 H 1.48499 * 109.47032 * 329.99394 * 13 11 9 16 16 H 1.48498 * 109.47181 * 209.99982 * 13 11 9 17 17 C 1.46901 * 111.00103 * 236.04385 * 2 1 3 18 18 C 1.53000 * 109.47149 * 287.49947 * 17 2 1 19 19 H 1.09002 * 109.87888 * 52.91893 * 18 17 2 20 20 C 1.54320 * 109.88848 * 291.89432 * 18 17 2 21 21 C 1.55395 * 102.89668 * 218.40737 * 20 18 17 22 22 C 1.54909 * 101.74420 * 35.47590 * 21 20 18 23 23 N 1.47442 * 109.88794 * 173.95265 * 18 17 2 24 24 C 1.39045 * 110.99873 * 356.15225 * 23 18 17 25 25 C 1.39485 * 120.15144 * 248.81407 * 24 23 18 26 26 C 1.38569 * 117.90127 * 180.02562 * 25 24 23 27 27 C 1.38817 * 118.03455 * 0.02562 * 26 25 24 28 28 N 1.31789 * 120.02141 * 0.02562 * 27 26 25 29 29 N 1.28351 * 122.28110 * 359.66371 * 28 27 26 30 30 H 1.09004 * 109.47545 * 55.38372 * 1 2 3 31 31 H 1.08999 * 109.47593 * 175.38272 * 1 2 3 32 32 H 1.09004 * 109.47840 * 295.38111 * 1 2 3 33 33 H 1.08995 * 109.47095 * 306.04506 * 3 2 1 34 34 H 1.08997 * 109.46939 * 186.04002 * 3 2 1 35 35 H 1.09005 * 109.46818 * 55.00325 * 8 4 3 36 36 H 1.08998 * 109.47208 * 295.00060 * 8 4 3 37 37 H 0.97002 * 120.00382 * 179.97438 * 12 11 9 38 38 H 1.08998 * 109.47208 * 47.49973 * 17 2 1 39 39 H 1.08996 * 109.46832 * 167.50278 * 17 2 1 40 40 H 1.08997 * 110.70950 * 336.68912 * 20 18 17 41 41 H 1.08995 * 110.70901 * 99.93065 * 20 18 17 42 42 H 1.09001 * 110.87409 * 277.38979 * 21 20 18 43 43 H 1.09001 * 111.06365 * 153.64990 * 21 20 18 44 44 H 1.08998 * 110.37628 * 204.18964 * 22 21 20 45 45 H 1.09006 * 110.37171 * 81.85050 * 22 21 20 46 46 H 1.07993 * 121.05120 * 0.02699 * 25 24 23 47 47 H 1.07990 * 120.97918 * 180.02562 * 26 25 24 48 48 H 1.08004 * 119.98793 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6313 2.0575 1.3182 5 1 0.5530 2.0058 1.4690 6 6 2.3155 1.3778 2.4304 7 7 2.8434 0.8532 3.2887 8 6 2.0698 3.5225 1.2689 9 6 1.6028 4.2289 2.5155 10 1 1.0491 3.6871 3.2679 11 6 1.8835 5.5667 2.6959 12 7 1.4764 6.1831 3.7839 13 14 2.8419 6.5037 1.3947 14 1 1.8973 7.0897 0.4101 15 1 3.7696 5.5758 0.6992 16 1 3.6210 7.5904 2.0406 17 6 1.9954 -0.7660 -1.1376 18 6 1.7733 -2.2599 -0.8930 19 1 0.7246 -2.4455 -0.6604 20 6 2.6624 -2.7388 0.2738 21 6 3.1207 -4.1477 -0.1949 22 6 3.2706 -3.9385 -1.7225 23 7 2.1653 -3.0277 -2.0891 24 6 2.5412 -2.1794 -3.1247 25 6 1.7461 -2.0714 -4.2656 26 6 2.1652 -1.2126 -5.2691 27 6 3.3493 -0.5139 -5.0776 28 7 4.0393 -0.6777 -3.9668 29 7 3.6543 -1.4670 -3.0307 30 1 -0.3634 0.5838 -0.8457 31 1 -0.3634 -1.0243 -0.0827 32 1 -0.3635 0.4405 0.9285 33 1 1.5611 1.9273 -0.8309 34 1 3.0796 1.3444 -0.1081 35 1 1.6329 4.0032 0.3936 36 1 3.1568 3.5745 1.2073 37 1 1.6742 7.1242 3.9110 38 1 1.4775 -0.4660 -2.0485 39 1 3.0623 -0.5702 -1.2448 40 1 3.5197 -2.0779 0.4015 41 1 2.0852 -2.8056 1.1960 42 1 2.3594 -4.8965 0.0237 43 1 4.0744 -4.4200 0.2573 44 1 3.1696 -4.8884 -2.2474 45 1 4.2324 -3.4787 -1.9499 46 1 0.8328 -2.6392 -4.3638 47 1 1.5877 -1.0906 -6.1734 48 1 3.7056 0.1636 -5.8395 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106844063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:51 Heat of formation + Delta-G solvation = 114.905551 kcal Electronic energy + Delta-G solvation = -28522.151965 eV Core-core repulsion = 24806.574285 eV Total energy + Delta-G solvation = -3715.577680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.191 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.81929 -39.46698 -37.85762 -35.62757 -33.72863 -33.59976 -33.35571 -31.98069 -30.16869 -29.86767 -27.67076 -26.57976 -25.02767 -24.42300 -23.98763 -21.78148 -21.44857 -21.35871 -20.24854 -17.98335 -17.39865 -16.95794 -16.90089 -16.63768 -16.42946 -15.44843 -15.16509 -14.89706 -14.59223 -14.28658 -14.07177 -13.82217 -13.55053 -13.51221 -13.31983 -12.96673 -12.85427 -12.41590 -12.24674 -12.16885 -11.93881 -11.79938 -11.59918 -11.36363 -11.35661 -11.27677 -11.20568 -10.99595 -10.80250 -10.69371 -10.52713 -10.36256 -10.19464 -9.96227 -9.90715 -9.74239 -9.31350 -8.87548 -8.60979 -8.29219 -6.09940 -4.10457 0.46435 0.54098 3.12225 3.20217 3.26260 3.35523 3.37465 3.70714 3.80130 3.83375 3.99255 4.19954 4.38128 4.39262 4.41240 4.52783 4.59929 4.65221 4.77812 4.83622 4.99204 5.12618 5.21485 5.24939 5.27910 5.31575 5.38919 5.45739 5.51193 5.52550 5.57542 5.67884 5.71154 5.74702 5.77729 5.86575 5.89057 5.99250 6.02992 6.16349 6.24592 6.31945 6.41014 6.74297 6.92749 7.03788 7.07168 7.15661 7.64535 8.38733 8.41519 8.57785 8.93595 9.50112 11.03139 Molecular weight = 329.19amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.003268 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.395968 B = 8566.684038 C = 9777.226548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.536 5.536 3 C 0.062 3.938 4 C 0.022 3.978 5 H 0.105 0.895 6 C 0.254 3.746 7 N -0.470 5.470 8 C -0.005 4.005 9 C -0.527 4.527 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.876 3.124 14 H -0.275 1.275 15 H -0.264 1.264 16 H -0.287 1.287 17 C 0.039 3.961 18 C 0.085 3.915 19 H 0.096 0.904 20 C -0.118 4.118 21 C -0.130 4.130 22 C 0.043 3.957 23 N -0.474 5.474 24 C 0.241 3.759 25 C -0.097 4.097 26 C -0.115 4.115 27 C 0.031 3.969 28 N -0.232 5.232 29 N -0.266 5.266 30 H 0.027 0.973 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.025 0.975 37 H 0.264 0.736 38 H 0.025 0.975 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.153 0.847 47 H 0.152 0.848 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.536 -19.921 -21.216 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.260 5.260 3 C -0.066 4.066 4 C 0.000 4.000 5 H 0.123 0.877 6 C -0.064 4.064 7 N -0.146 5.146 8 C -0.044 4.044 9 C -0.564 4.564 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.535 5.535 13 Si 0.703 3.297 14 H -0.201 1.201 15 H -0.188 1.188 16 H -0.212 1.212 17 C -0.090 4.090 18 C -0.022 4.022 19 H 0.114 0.886 20 C -0.157 4.157 21 C -0.168 4.168 22 C -0.083 4.083 23 N -0.199 5.199 24 C 0.006 3.994 25 C -0.127 4.127 26 C -0.145 4.145 27 C -0.133 4.133 28 N -0.074 5.074 29 N -0.112 5.112 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.171 0.829 47 H 0.169 0.831 48 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.337 -20.659 -18.670 27.847 hybrid contribution -0.792 1.443 -2.359 2.876 sum -0.455 -19.217 -21.029 28.490 Atomic orbital electron populations 1.22532 0.87319 1.01528 1.01688 1.61907 1.08013 1.14140 1.41960 1.22278 1.00785 0.87076 0.96507 1.18957 0.99631 0.95306 0.86133 0.87702 1.28646 0.92915 0.91290 0.93504 1.80990 1.10359 1.12111 1.11184 1.19643 0.97445 0.88522 0.98830 1.21015 1.36615 0.95072 1.03743 0.90758 1.24978 0.95152 0.97561 0.95346 1.69903 1.46211 1.10954 1.26441 0.86838 0.80774 0.79983 0.82122 1.20085 1.18821 1.21246 1.22966 1.01588 0.93185 0.91245 1.22464 1.00742 0.91289 0.87708 0.88626 1.22715 0.99818 0.95377 0.97774 1.22781 1.02072 0.97971 0.93988 1.23156 0.92601 0.96003 0.96558 1.61996 1.35802 1.15568 1.06499 1.21546 0.91630 0.92723 0.93483 1.22187 1.00657 0.97626 0.92213 1.22445 0.96942 0.95036 1.00029 1.24345 0.92985 0.98541 0.97469 1.72909 1.25745 1.10407 0.98344 1.73304 1.14024 1.03078 1.20784 0.95447 0.91580 0.90404 0.93186 0.90270 0.95100 0.95639 0.92569 0.95669 0.88580 0.90529 0.90020 0.90638 0.90375 0.89969 0.91554 0.82879 0.83074 0.81053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.11 60.06 0.55 0.75 16 2 N -0.54 -7.18 4.24 -242.92 -1.03 -8.21 16 3 C 0.06 0.94 4.31 -3.82 -0.02 0.92 16 4 C 0.02 0.40 2.13 -93.40 -0.20 0.20 16 5 H 0.11 1.82 6.43 -51.93 -0.33 1.49 16 6 C 0.25 5.35 13.67 -20.76 -0.28 5.07 16 7 N -0.47 -10.79 18.54 42.15 0.78 -10.00 16 8 C -0.01 -0.12 3.49 -27.88 -0.10 -0.22 16 9 C -0.53 -14.37 9.15 -34.44 -0.32 -14.68 16 10 H 0.07 2.22 7.84 -52.49 -0.41 1.81 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 13 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 17 C 0.04 0.48 2.89 -3.82 -0.01 0.47 16 18 C 0.08 0.91 3.46 -66.72 -0.23 0.68 16 19 H 0.10 0.99 6.47 -51.93 -0.34 0.66 16 20 C -0.12 -1.31 6.33 -24.77 -0.16 -1.47 16 21 C -0.13 -1.15 7.08 -24.45 -0.17 -1.32 16 22 C 0.04 0.40 6.62 -2.30 -0.02 0.39 16 23 N -0.47 -4.71 5.16 -162.36 -0.84 -5.55 16 24 C 0.24 2.49 3.68 -154.77 -0.57 1.92 16 25 C -0.10 -0.75 10.05 -38.99 -0.39 -1.14 16 26 C -0.12 -0.72 10.20 -39.25 -0.40 -1.12 16 27 C 0.03 0.25 11.31 -17.36 -0.20 0.05 16 28 N -0.23 -2.75 11.49 30.57 0.35 -2.40 16 29 N -0.27 -3.28 7.93 31.23 0.25 -3.03 16 30 H 0.03 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.07 0.66 6.38 -51.93 -0.33 0.33 16 32 H 0.08 0.95 6.59 -51.93 -0.34 0.61 16 33 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.08 1.25 7.85 -51.93 -0.41 0.84 16 35 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 36 H 0.03 0.58 7.20 -51.93 -0.37 0.20 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.03 0.32 6.87 -51.93 -0.36 -0.04 16 39 H 0.10 1.38 5.82 -51.93 -0.30 1.08 16 40 H 0.08 1.01 7.75 -51.93 -0.40 0.61 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.71 7.05 -51.93 -0.37 0.34 16 46 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 47 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 48 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -33.29 383.53 -8.53 -41.82 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.32 Total: -0.65 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.61 Total: -7.56 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.29 Total: -55.69 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.29 -8.53 -41.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106844063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.728 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds