Wall clock time and date at job start Tue Mar 31 2020 05:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33127 * 120.00086 * 2 1 4 4 C 1.46958 * 119.99902 * 175.11918 * 3 2 1 5 5 O 1.21651 * 119.99959 * 50.54914 * 4 3 2 6 6 N 1.34777 * 119.99290 * 230.54920 * 4 3 2 7 7 C 1.36821 * 119.99277 * 179.97438 * 6 4 3 8 8 H 1.08001 * 119.99444 * 172.09285 * 7 6 4 9 9 C 1.39071 * 120.00255 * 352.09742 * 7 6 4 10 10 N 1.31354 * 120.00189 * 62.01314 * 9 7 6 11 11 Si 1.86798 * 120.00087 * 242.01191 * 9 7 6 12 12 H 1.48501 * 109.47576 * 180.02562 * 11 9 7 13 13 H 1.48498 * 109.47024 * 300.00285 * 11 9 7 14 14 H 1.48498 * 109.47005 * 59.99843 * 11 9 7 15 15 C 1.46494 * 120.00496 * 359.97438 * 6 4 3 16 16 C 1.52992 * 117.49943 * 193.94207 * 15 6 4 17 17 C 1.52992 * 60.00325 * 252.51094 * 16 15 6 18 18 C 1.50699 * 119.99984 * 179.97438 * 2 1 3 19 19 C 1.52999 * 109.47032 * 105.56367 * 18 2 1 20 20 C 1.53000 * 109.47324 * 179.97438 * 19 18 2 21 21 C 1.53003 * 109.46873 * 59.99878 * 20 19 18 22 22 C 1.52999 * 109.47244 * 300.00171 * 21 20 19 23 23 C 1.52996 * 109.46999 * 299.99903 * 22 21 20 24 24 C 1.53004 * 109.47407 * 60.00061 * 23 22 21 25 25 C 1.52996 * 109.47248 * 300.00051 * 20 19 18 26 26 C 1.52996 * 109.47326 * 225.56287 * 18 2 1 27 27 C 1.52993 * 109.47171 * 345.56345 * 18 2 1 28 28 H 1.08996 * 109.46865 * 90.00268 * 1 2 3 29 29 H 1.08995 * 109.46987 * 210.00317 * 1 2 3 30 30 H 1.09004 * 109.47009 * 330.00521 * 1 2 3 31 31 H 1.07997 * 119.99772 * 355.11225 * 3 2 1 32 32 H 0.97000 * 119.99980 * 7.83447 * 10 9 7 33 33 H 1.09004 * 115.54852 * 339.65369 * 15 6 4 34 34 H 1.09009 * 117.50310 * 0.02562 * 16 15 6 35 35 H 1.09007 * 117.50257 * 145.01960 * 16 15 6 36 36 H 1.08996 * 117.50115 * 252.51069 * 17 16 15 37 37 H 1.08998 * 117.51878 * 107.47883 * 17 16 15 38 38 H 1.09003 * 109.47173 * 300.00058 * 19 18 2 39 39 H 1.08999 * 109.47257 * 60.00153 * 19 18 2 40 40 H 1.08993 * 109.47393 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.46899 * 179.97438 * 21 20 19 42 42 H 1.09003 * 109.47007 * 60.00237 * 21 20 19 43 43 H 1.08999 * 109.47257 * 179.97438 * 22 21 20 44 44 H 1.09005 * 109.47596 * 300.00105 * 23 22 21 45 45 H 1.08999 * 109.47503 * 179.97438 * 23 22 21 46 46 H 1.08994 * 109.47512 * 179.97438 * 24 23 22 47 47 H 1.08999 * 109.47143 * 299.99647 * 25 20 19 48 48 H 1.09006 * 109.47396 * 179.97438 * 25 20 19 49 49 H 1.08999 * 109.47143 * 299.99957 * 26 18 2 50 50 H 1.08999 * 109.47503 * 59.99984 * 26 18 2 51 51 H 1.08998 * 109.47435 * 299.99998 * 27 18 2 52 52 H 1.09003 * 109.47007 * 59.99959 * 27 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1529 0.0000 4 6 3.6382 1.1552 0.1083 5 8 4.3037 0.4527 -0.6290 6 7 4.2449 1.9356 1.0245 7 6 5.6094 1.9373 1.1256 8 1 6.1023 2.6525 1.7675 9 6 6.3615 1.0182 0.4020 10 7 6.3246 1.0280 -0.9110 11 14 7.4243 -0.2302 1.2971 12 1 8.1208 -1.0889 0.3058 13 1 8.4289 0.4804 2.1283 14 1 6.5684 -1.0743 2.1690 15 6 3.4435 2.7819 1.9119 16 6 4.1736 3.8747 2.6951 17 6 3.6591 2.6288 3.4188 18 6 2.2605 -1.3051 0.0006 19 6 2.8507 -1.5539 -1.3889 20 6 3.6162 -2.8786 -1.3882 21 6 2.6619 -4.0189 -1.0278 22 6 2.0717 -3.7701 0.3617 23 6 3.2013 -3.7058 1.3915 24 6 4.1557 -2.5655 1.0312 25 6 4.7459 -2.8142 -0.3584 26 6 3.3901 -1.2414 1.0305 27 6 1.3057 -2.4450 0.3607 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.6356 2.0865 -0.0797 32 1 5.8657 1.7437 -1.3780 33 1 2.4323 2.9991 1.5676 34 1 5.2503 3.9643 2.5499 35 1 3.6429 4.8114 2.8663 36 1 2.7900 2.7456 4.0660 37 1 4.3970 1.8980 3.7500 38 1 2.0459 -1.5993 -2.1227 39 1 3.5309 -0.7417 -1.6455 40 1 4.0363 -3.0560 -2.3782 41 1 3.2072 -4.9627 -1.0278 42 1 1.8571 -4.0647 -1.7615 43 1 1.3915 -4.5822 0.6183 44 1 3.7468 -4.6496 1.3921 45 1 2.7810 -3.5281 2.3814 46 1 4.9603 -2.5194 1.7651 47 1 5.4258 -2.0019 -0.6152 48 1 5.2910 -3.7582 -0.3576 49 1 4.0703 -0.4293 0.7739 50 1 2.9697 -1.0642 2.0204 51 1 0.8853 -2.2679 1.3506 52 1 0.5010 -2.4904 -0.3731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107347020.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:34 Heat of formation + Delta-G solvation = 55.463565 kcal Electronic energy + Delta-G solvation = -32381.122338 eV Core-core repulsion = 28734.214653 eV Total energy + Delta-G solvation = -3646.907685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.210 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.17761 -38.83536 -36.49974 -35.01476 -32.74212 -31.91226 -31.83718 -31.29404 -30.14238 -27.65052 -25.24275 -25.12594 -24.33708 -22.00002 -21.76719 -21.26562 -20.73152 -20.71591 -19.82504 -17.79314 -17.10312 -16.56928 -16.10465 -15.00543 -14.40191 -14.25429 -13.93811 -13.75548 -13.74048 -13.62000 -13.47057 -13.26641 -13.05228 -12.83291 -12.42737 -12.35003 -12.16527 -12.00086 -11.86470 -11.74240 -11.54130 -11.24838 -10.88411 -10.75919 -10.63284 -10.44341 -10.33977 -10.26258 -10.22493 -10.19697 -10.07199 -9.92621 -9.86500 -9.51693 -9.08636 -8.95972 -8.77789 -8.55001 -8.07214 -7.63845 -7.07902 -6.27581 -3.47175 2.53842 3.43626 3.56225 3.69192 4.10642 4.38995 4.70205 4.82202 5.01465 5.09078 5.10391 5.16131 5.45599 5.46733 5.51791 5.67937 5.71327 5.75848 5.79846 5.81707 5.83366 5.87503 5.89871 5.95421 6.00947 6.05823 6.06547 6.08402 6.14133 6.17612 6.23928 6.25234 6.38121 6.43953 6.48767 6.51524 6.53425 6.61070 6.65882 6.71498 6.73132 6.77146 6.79865 6.95631 7.17906 7.24363 7.27939 7.30526 7.42916 7.63864 7.79977 7.95669 8.27400 8.86544 9.27351 9.65780 10.33235 10.60453 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.012402 B = 0.007237 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.214489 B = 3867.890438 C = 4965.085118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.091 4.091 3 C -0.178 4.178 4 C 0.415 3.585 5 O -0.534 6.534 6 N -0.381 5.381 7 C -0.509 4.509 8 H 0.088 0.912 9 C 0.073 3.927 10 N -0.697 5.697 11 Si 1.012 2.988 12 H -0.284 1.284 13 H -0.294 1.294 14 H -0.280 1.280 15 C 0.078 3.922 16 C -0.187 4.187 17 C -0.194 4.194 18 C 0.004 3.996 19 C -0.120 4.120 20 C -0.076 4.076 21 C -0.106 4.106 22 C -0.082 4.082 23 C -0.108 4.108 24 C -0.079 4.079 25 C -0.103 4.103 26 C -0.153 4.153 27 C -0.101 4.101 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.290 0.710 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.031 0.969 39 H 0.133 0.867 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.082 0.918 48 H 0.040 0.960 49 H 0.155 0.845 50 H 0.030 0.970 51 H 0.052 0.948 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.739 -3.694 2.857 9.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.093 4.093 3 C -0.199 4.199 4 C 0.212 3.788 5 O -0.423 6.423 6 N -0.094 5.094 7 C -0.630 4.630 8 H 0.105 0.895 9 C -0.156 4.156 10 N -0.321 5.321 11 Si 0.839 3.161 12 H -0.209 1.209 13 H -0.221 1.221 14 H -0.206 1.206 15 C -0.029 4.029 16 C -0.225 4.225 17 C -0.232 4.232 18 C 0.004 3.996 19 C -0.157 4.157 20 C -0.094 4.094 21 C -0.144 4.144 22 C -0.100 4.100 23 C -0.145 4.145 24 C -0.097 4.097 25 C -0.141 4.141 26 C -0.189 4.189 27 C -0.139 4.139 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.049 0.951 39 H 0.150 0.850 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.101 0.899 48 H 0.059 0.941 49 H 0.172 0.828 50 H 0.049 0.951 51 H 0.071 0.929 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.491 -5.276 2.220 9.428 hybrid contribution -1.421 1.266 0.632 2.005 sum -8.912 -4.010 2.851 10.180 Atomic orbital electron populations 1.20887 0.93059 1.01910 1.01445 1.22042 0.94122 0.94827 0.98289 1.22562 0.96066 0.96670 1.04637 1.17419 0.86987 0.88993 0.85376 1.90611 1.63638 1.43026 1.45000 1.42946 1.05483 1.33726 1.27290 1.19603 0.80469 1.25002 1.37912 0.89451 1.25378 0.98466 0.98033 0.93706 1.70349 1.21877 1.29438 1.10485 0.84448 0.76293 0.78107 0.77228 1.20932 1.22069 1.20618 1.21524 0.95372 0.97191 0.88837 1.23203 1.01950 0.92387 1.04954 1.23227 1.03122 1.01001 0.95894 1.19153 0.93688 0.89754 0.96965 1.22235 0.99801 0.99748 0.93896 1.20925 0.95533 0.94996 0.97955 1.21567 0.98540 0.98211 0.96084 1.21008 0.96506 0.96913 0.95584 1.21584 0.96732 0.98522 0.97680 1.20960 0.96866 0.94976 0.96892 1.21467 0.97430 1.00817 0.94355 1.22807 0.99141 1.01202 0.95775 1.21688 0.97358 0.94787 1.00048 0.92081 0.91562 0.92548 0.88271 0.89835 0.87173 0.87696 0.89741 0.89753 0.88320 0.95056 0.85023 0.92437 0.93067 0.93008 0.92616 0.93115 0.92999 0.92285 0.89940 0.94077 0.82849 0.95103 0.92938 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 9.39 36.01 0.34 -1.31 16 2 C -0.09 -1.64 4.98 -101.13 -0.50 -2.14 16 3 C -0.18 -3.52 8.00 -37.83 -0.30 -3.82 16 4 C 0.42 9.63 4.44 -12.73 -0.06 9.58 16 5 O -0.53 -13.45 6.02 5.23 0.03 -13.42 16 6 N -0.38 -8.83 2.96 -110.95 -0.33 -9.16 16 7 C -0.51 -12.96 8.82 -15.02 -0.13 -13.09 16 8 H 0.09 2.24 5.94 -52.49 -0.31 1.93 16 9 C 0.07 1.90 3.55 -17.45 -0.06 1.84 16 10 N -0.70 -18.93 11.12 55.50 0.62 -18.31 16 11 Si 1.01 23.88 29.98 -169.99 -5.10 18.78 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.56 6.35 56.52 0.36 -6.20 16 15 C 0.08 1.49 6.11 -67.94 -0.41 1.08 16 16 C -0.19 -3.21 9.83 -26.74 -0.26 -3.47 16 17 C -0.19 -3.33 10.17 -26.74 -0.27 -3.61 16 18 C 0.00 0.08 0.49 -155.67 -0.08 0.01 16 19 C -0.12 -2.37 4.20 -26.73 -0.11 -2.48 16 20 C -0.08 -1.39 3.19 -90.62 -0.29 -1.68 16 21 C -0.11 -1.66 5.19 -26.73 -0.14 -1.80 16 22 C -0.08 -1.26 3.20 -90.60 -0.29 -1.55 16 23 C -0.11 -1.78 5.19 -26.73 -0.14 -1.92 16 24 C -0.08 -1.55 3.20 -90.64 -0.29 -1.84 16 25 C -0.10 -2.06 5.19 -26.73 -0.14 -2.20 16 26 C -0.15 -3.22 3.68 -26.76 -0.10 -3.32 16 27 C -0.10 -1.63 3.16 -26.71 -0.08 -1.71 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.87 5.88 -51.93 -0.31 0.57 16 30 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 31 H 0.10 1.77 7.36 -52.49 -0.39 1.38 16 32 H 0.29 8.10 8.02 -40.82 -0.33 7.77 16 33 H 0.11 1.90 6.60 -51.93 -0.34 1.56 16 34 H 0.10 2.00 6.15 -51.92 -0.32 1.68 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.13 3.10 4.56 -49.63 -0.23 2.87 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 1.24 7.39 -51.93 -0.38 0.86 16 47 H 0.08 1.94 7.98 -51.93 -0.41 1.52 16 48 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.15 3.68 2.64 -55.07 -0.15 3.54 16 50 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.05 0.82 7.66 -51.93 -0.40 0.42 16 52 H 0.05 0.80 7.32 -51.93 -0.38 0.42 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -26.27 364.04 -11.31 -37.58 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -8.69 Total: 12.50 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: -3.33 Total: -33.46 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.29 Total: -27.47 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.03 Total: -13.42 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -5.10 Total: 18.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -26.27 -11.31 -37.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107347020.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.047 kcal (2) G-P(sol) polarization free energy of solvation -26.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds